River organic matter shapes microbial communities in the sediment of the Rh?ne prodelta

Microbial-driven organic matter (OM) degradation is a cornerstone of benthic community functioning, but little is known about the relation between OM and community composition. Here we use Rhône prodelta sediments to test the hypothesis that OM quality and source are fundamental structuring factors for bacterial communities in benthic environments. Sampling was performed on four occasions corresponding to contrasting river-flow regimes, and bacterial communities from seven different depths were analyzed by pyrosequencing of 16S rRNA gene amplicons. The sediment matrix was characterized using over 20 environmental variables including bulk parameters (for example, total nitrogen, carbon, OM, porosity and particle size), as well as parameters describing the OM quality and source (for example, pigments, total lipids and amino acids and δ¹³C), and molecular-level biomarkers like fatty acids. Our results show that the variance of the microbial community was best explained by δ¹³C values, indicative of the OM source, and the proportion of saturated or polyunsaturated fatty acids, describing OM lability. These parameters were traced back to seasonal differences in the river flow, delivering OM of different quality and origin, and were directly associated with several frequent bacterial operational taxonomic units. However, the contextual parameters, which explained at most 17% of the variance, were not always the key for understanding the community assembly. Co-occurrence and phylogenetic diversity analysis indicated that bacteria–bacteria interactions were also significant. In conclusion, the drivers structuring the microbial community changed with time but remain closely linked with the river OM input.     

Resilience and regime change in a southern Rocky Mountain ecosystem during the past 17?000 years

Paleoecological records indicate that subalpine forests in western North America have been resilient in response to multiple influences, including severe droughts, insect outbreaks, and widely varying fire regimes, over many millennia. One hypothesis for explaining this ecosystem resilience centers on the disruption of forest dynamics by frequent disturbance and climatic variability, and the resulting development of non-steady-state regimes dominated by early-successional conifers with broad climatic tolerances, such as lodgepole pine (Pinus contorta var. latifolia Engelm. ex Wats.). To evaluate this hypothesis, we independently reconstructed the vegetation, fire, and effective-moisture histories of a small, forested watershed at 2890 m elevation in southeastern Wyoming, USA, using sedimentary pollen and charcoal counts in conjunction with sedimentary lake-level indicators. The data indicate that prominent vegetation shifts (from sagebrush steppe to spruce–fir parkland at ca. 10.7 ka and spruce–fir parkland to pine-dominated forest at ca. 8.5 ka [ka stands for thousands of years before the present, defined as AD 1950]) coincided with changes in effective moisture. However, after lodgepole pine forests established at ca. 8.5 ka, similar hydroclimatic changes did not produce detectable vegetation responses. Fire history data show that other aspects of the ecosystem were responsive to changes in effective moisture at centennial timescales with prolonged fire-free episodes coinciding with periods of low effective moisture ca. 7.2–5.6 and 3.7–1.6 ka. Throughout our record, the ratio of ecosystem perturbation time (i.e., fire frequency and changes in effective moisture) to recovery time (assuming 200–600-year successional processes) falls within estimates of the ratio for non-steady state ecosystems. Frequent perturbations, therefore, may have prevented this ecosystem from reaching compositional equilibrium with the varied climatic conditions over the past 8.5 ka. Equilibrium states could have included more abundant spruce (Picea spp.) and fir (Abies spp.) than presently observed based on brief increases in pollen abundances of these taxa during prolonged dry, fire-free intervals. Our results show that, although current climate changes favor widespread disturbance in Rocky Mountain forests, the composition of these ecosystems could be highly resilient and recover through successional dynamics over the next few decades to centuries.     

Is the habitation of acidic-water sanctuaries by galaxiid fish facilitated by natural organic matter modification of sodium metabolism?

Abstract Acidic waters of New Zealand's West Coast are hypothesized to be a refuge for native galaxiid fish, allowing them to escape predation from acid-sensitive invasive salmonid species. To determine the mechanisms by which galaxiids tolerate low pH, we investigated sodium metabolism in inanga Galaxias maculatus in response to water pH, short-term acclimation to acidic waters, the presence and source of natural organic matter (NOM), and fish life history. Contrary to expectation, inanga were physiologically sensitive to acid exposure, displaying inhibited sodium influx and exacerbated sodium efflux. Short-term (144 h) acclimation to acid did not modify this effect, and NOM did not exert a protective effect on sodium metabolism at low pH. Inanga sourced from naturally acidic West Coast waters did, however, display a sodium influx capacity (J(max)) that was significantly elevated when compared with that of fish collected from neutral waters. All inanga, independent of source, exhibited exceptionally high sodium uptake affinities (18-40 μM) relative to previously studied freshwater teleosts. Although inanga displayed relatively poor physiological tolerance to acidic waters, their high sodium influx affinity coupled with their occupation of near-coastal waters with elevated sodium levels may permit habitation of low-pH freshwaters.     

Diatoms and their preservation in the sediments of Lake Neuchâtel (Switzerland) as evidence of past hydrological changes

Core LNO3 is 1136 cm long and includes uninterrupted sediments from the Oldest Dryas to historic time which have been submitted for geological, geochemical, palynological and diatom analysis. Thirty samples have been investigated for diatoms, focussing especially on their preservation, which changed during major hydrological events. In the lower part of the core (Oldest Dryas to beginning of Atlantic), with low carbonate, but high clastic silicate content, the diatoms are rare but are well preserved. In the upper well carbonated part of the core (Atlantic to historical periods), the diatoms are abundant but show traces of dissolution.Between 1136 and 909 cm (Oldest Dryas) the flora is made up of benthic species principally of the genus Fragilaria. This flora is often the first to develop after the last glaciation. Between 879 and 569 cm (Bølling to beginning of Atlantic), littoral and terrestrial species adapted to eutrophic conditions are dominating. They suggest a strong fluvial impact on sedimentation, which corroborates the hypothesis of past inflows of the River Aar into the lake. Between 529 cm and 1 cm (Atlantic to historical periods) planktonic species of the genera Cyclotella, Aulacoseira or Stephanodiscus are dominating. This suggests that the upper well carbonated sediments were mainly formed by pelagic precipitation, without influence of the River Aar. The trophic level of the lake seems to have decreased, then increased again during prehistoric deforestation and development of agriculture in the watershed.     

High occurrence of Orbulina suturalis and “Praeorbulina-like specimens” in sediments of the northern Arabian Sea during the Last Glacial Maximum

This study focuses on the exceptionally high occurrence of Orbulina suturalis and morphotypes very close to Praeorbulina in Late Glacial sediments from the Northern Arabian Sea. The genus Praeorbulina has been described by Blow (1956) as an ancestor of Orbulina universa. Our study is based on the analysis of three sediment cores retrieved in the Gulf of Oman (KS01, MD04-2849, and MD04-2861), covering the Late Pleistocene (last 30 ka CAL-BP). Planktonic foraminiferal assemblages were investigated and revealed that this remarkable abundance of Orbulina suturalis, and numerous specimens morphologically close to Praeorbulina, occurs during a short time interval roughly representing the Last Glacial Maximum. One AMS ¹⁴C date was obtained on a monospecific sample of Praeorbulina-like specimens, giving an age of 19 CAL-ka BP, which confirms the Late Glacial age and unreworked character of this population. In this paper, we discuss the morphological similarities relating the observed Praeorbulina-like specimens to the genera Orbulina and Praeorbulina. We will also discuss the period of occurrence of these specimens and the potential environmental changes that may have caused their atypical morphology.     

Paleoenvironmental changes in northwest Mongolia during the last 27?kyr inferred from organic components in the Lake Hovsgol sediment core record

We studied organic components in the X106 sediment core (length 130.3 cm, water depth 236 m, 50°53′01″N, 100°21′22″E) from Lake Hovsgol to elucidate the biological production, source of organic components, and paleoenvironmental and paleolimnological changes during the last 27 kyr in northwest Mongolia. Total organic carbon (TOC) contents (0.20–0.70%) in the core of the last glacial period increased dramatically and attained 3.16–5.85% in the postglacial period (Holocene), together with the increase of the contribution of terrestrial organic matter. Biological production (both terrestrial and aquatic production) based on the TOC contents in the Holocene was 14 times higher than that in the last glacial period. The B?lling-Aller?d warm period and Younger Dryas cool period were both observed at depths of 55–50 cm (ca. 15–13 cal kyr BP) and 50–45 cm (ca. 13–11 cal kyr BP), respectively. We propose here a terrestrial/aquatic index (TAI) for organic matter in lake sediments. The TAI values suggest that terrestrial organic matter in the bottom of the core was less than 10%, increased to 48% in the B?lling-Aller?d warm period, decreased abruptly to 20% in the Younger Dryas cool period, and again increased to 30–40% in the Holocene. Normal-C₃₁ alkane (a biomarker of herbaceous land plants) and n-C₁₈ alkanoic acid (marker of plankton) decreased from the last glacial period to the Holocene, whereas n-C₂₃ alkane and n-C₂₂ alkanoic acid (a marker of higher vascular plants) increased from the last glacial period to the Holocene. Scarce herbaceous plant vegetation, such as Artemisia spp. of the lake basin in the last glacial period, changed into an abundance of higher woody plant vegetation (e.g., Pinus spp., Betula spp. and/or Larix spp.) in the Holocene. Stanol/sterol ratios suggest that relatively high oxygen tension of the lake bottom in ca. 27–22 cal kyr BP decreased from this age to the present, though benthic organisms are still abundant.     

High concentrations of viruses in the sediments of Lac Gilbert, Québec

Viruses were found to be very abundant in the top layer of the sediments of Lac Gilbert, Québec. Viruses were extracted from the sediments using pyrophosphate buffer, and viruses from the diluted extracts were pelleted onto grids and enumerated using transmission electron microscopy. Viral abundance in the sediments ranged from 6.5 × 10⁸ to 1.83 × 10¹⁰ ml^–1, which is 10- to 1,000-fold greater than the number observed in the water column. This increase corresponds well with the 100- to 1,000-fold increase in bacterial abundance in the sediments. Viral abundance differed significantly among the surface sediment samples taken at different bottom depths and among samples taken at different depths of the water column. Viral abundance also varied significantly between the oxic and anoxic zones of the water column and the sediments. The virus-to-bacteria ratio varied greatly among the different sediment sites but not among depths in the water column. Viral abundance in the water column was related to bacterial abundance and chlorophyll concentration, whereas viruses in the sediments were most abundant in sediments with high organic matter content. Elevated viral abundance and their erratic distribution in the sediments suggest that viruses might play an important role in sediment microbial dynamics. Correspondence to: Roxane Maranger     

Mercury–organic matter relationships in pre-pollution sediments of thermokarst lakes from the Mackenzie River Delta, Canada: the role of depositional environment

This study investigates the influence of organic matter (OM) on the historical variations of Hg in sediments from two closely-situated Canadian Arctic lakes, prior to the advent of Hg pollution inputs. Because of variable landscape evolution in the Mackenzie River Delta over the past 1–3 millennia, the lakes provide distinctly different histories of OM sources, types, and degree of aquatic productivity (i.e., depositional environments). They also differ significantly in their pre-1900 Hg concentration profiles. When labile, kerogen-like carbon (“S2”) from aquatic sources (diatoms and other unicellular algae) increased between 750 and 1900 A.D. in the more productive lake (Nesbitt), Hg concentrations also increased by ca. 50%. In contrast, S2 carbon concentrations in the nearby organic-poor lake (Big Lake) were several-times lower than in Nesbitt and decreased over the past millennium, while Hg concentrations showed no trend probably reflecting the stable input of clastic material from tundra soils. The contrast between lakes suggests that OM derived from unicellular algae is more effective at scavenging Hg than OM from terrestrial plants or aquatic macrophytes, possibly because of a higher content of labile, sulphur-rich compounds, high particle surface area and its dispersion throughout the water column. The results indicate that, in the absence of anthropogenic Hg inputs, increasing phytoplankton productivity and Hg scavenging alone can lead to significant increases in the Hg content of lake sediments. This finding is consistent with the hypothesis that increasing lake productivity because of climate warming during the twentieth century has confounded the interpretation of recently increasing Hg levels in northern lake sediments as being unequivocally due to anthropogenic Hg deposition. This study also suggests that sedimentary TOC by itself is a poor and sometimes misleading indicator of possible changes in the source and quality of OM in aquatic systems, which can have a major impact on Hg concentrations in sediments.     

Can changes in the distributions of resident birds in China over the past 50?years be attributed to climate change?

The distributions of bird species have changed over the past 50 years in China. To evaluate whether the changes can be attributed to the changing climate, we analyzed the distributions of 20 subspecies of resident birds in relation to climate change. Long‐term records of bird distributions, gray relational analysis, fuzzy‐set classification techniques, and attribution methods were used. Among the 20 subspecies of resident birds, the northern limits of over half of the subspecies have shifted northward since the 1960s, and most changes have been related to the thermal index. Driven by climate change over the past 50 years, the suitable range and latitude or longitude of the distribution centers of certain birds have exhibited increased fluctuations. The northern boundaries of over half of the subspecies have shifted northward compared with those in the 1960s. The consistency between the observed and predicted changes in the range limits was quite high for some subspecies. The changes in the northern boundaries or the latitudes of the centers of distribution of nearly half of the subspecies can be attributed to climate change. The results suggest that climate change has affected the distributions of particular birds. The method used to attribute changes in bird distributions to climate change may also be effective for other animals.     

Eutrophication of moderately deep Dutch lakes during the past century: flaws in the expectations of water management?

We studied the trophic development of the past 30–100 years in eight moderately deep Dutch lakes based on their sedimentary fossil diatom assemblages. The dominant diatoms indicating meso- to eutrophic conditions were Aulacoseira subarctica, Cyclotella ocellata, C. cyclopuncta, C. meneghiniana, Puncticulata bodanica, Aulacoseira granulata, Cyclostephanos dubius, C. invisitatus, Stephanodiscus hantzschii, S. medius, and S. parvus. Ordination of diatom data separated the lakes into four groups according to their total phosphorus concentrations (TP), water supply, water management, and origin. The first group consists of dike-breach lakes, which were in stable eutrophic to hypertrophic conditions throughout the past century with diatom-inferred TP (DI-TP) concentrations of between 70 and 300 μg l⁻¹. The main factors influencing these dike-breach lakes are river management, ground water supply of riverine origin, and local land use. The second group are artificial lakes of fluctuating oligo- to mesotrophic conditions and DI-TP concentrations of 10–30 μg l⁻¹. Only one of the artificial lakes showed a DI-TP increase due to changes in catchment agricultural practice. A third group includes an artificial moat and an inland dike-breach lake with DI-TP concentrations of 50–100 μg l⁻¹. The fourth group contains an individual dike-breach lake with stable mesotrophic conditions of 50 μg l⁻¹ throughout the past century. Rather than showing a regional pattern, the studied lakes behave very individualistically with regard to their trophic history, reflecting changes in the local hydrology and in their nutrient sources.     

The role of laccase in stabilization of soil organic matter by iron in various plant-dominated peatlands: degradation or sequestration?

Plant and Soil - The association of organic matter with iron (Fe-OM associations) is recognized as an important stabilization mechanism for soil organic matter. Our objective was to assess the...     

Stimulation of soil nitrification and denitrification by grazing in grasslands: do changes in plant species composition matter?

Stimulation of nitrification and denitrification by long term (from years to decades) grazing has commonly been reported in different grassland ecosystems. However, grazing generally induces important changes in plant species composition, and whether changes in nitrification and denitrification are primarily due to changes in vegetation composition has never been tested. We compared soil nitrification- and denitrification-enzyme activities (NEA and DEA, respectively) between semi-natural grassland sites experiencing intensive (IG) and light (LG) grazing/mowing regimes for 13 years. Mean NEA and DEA (i.e. observed from random soil sampling) were higher in IG than LG sites. The NEA/DEA ratio was higher in IG than LG sites, indicating a higher stimulation of nitrification. Marked changes in plant species composition were observed in response to the grazing/mowing regime. In particular, the specific phytomass volume of Elymus repens was lower in IG than LG sites, whereas the specific volume of Lolium perenne was higher in IG than LG sites. In contrast, the specific volume of Holcus lanatus, Poa trivialis and Arrhenatherum elatius were not significantly different between treatments. Soils sampled beneath grass tussocks of the last three species exhibited higher DEA, NEA and NEA/DEA ratio in IG than LG sites. For a given grazing regime, plant species did not affect significantly soil DEA, NEA and NEA/DEA ratio. The modification of plant species composition is thus not the primary factor driving changes in nitrification and denitrification in semi-natural grassland ecosystems experiencing long term intensive grazing. Factors such as trampling, N returned in animal excreta, and/or modification of N uptake and C exudation by frequently defoliated plants could be responsible for the enhanced microbial activities.     

Lake–peat bog transformation recorded in the sediments of the Stare Biele mire (Northeastern Poland)

The history of Stare Biele paleolake (northeast Poland) has been reconstructed using subfossil Cladocera remains and pollen and spores of aquatic and mire plants from a sediment core. Sediment accumulation began approximately 12,000 years ago during the Older Dryas chronozone. Throughout the entire Late Glacial period, the basin was a small, low-trophic state lake with a developed open-water zone. A well-recorded increase in the trophic state started at the beginning of Holocene. The lake reached its highest trophic level during the early and middle Atlantic chronozone. The first human activity in the lake catchment area occurred at this time, as recorded by fern spores and numerous charcoal grains. Repeated rises in lake water level are documented at the beginning and throughout the early part of the Younger Dryas. Two clear events of decreasing lake water levels are recorded, first during the middle part of the Younger Dryas and second in the Preboreal. Terrestrialization processes first intensified at the end of Atlantic period, which appears to correspond to a decrease in pH. Guest editors: K. Buczkó, J. Korponai, J. Padisák & S. W. Starratt Palaeolimnological Proxies as Tools of Environmental Reconstruction in Fresh Water     

Uptake of organic matter by the roots of sweet potato: Analysis of the δ14C value of plants

Summary To determine whether sweet potato (Ipomoea batatas (L.) Poir.) takes up organic matter through the roots from the medium, the concentrations of natural¹⁴C (¹⁴C) in plant organic matter, atmospheric CO₂ and compost applied to media were examined under soil and sand culture conditions. In these experiments, three kinds of composts of different ¹⁴C were used. CO₂ derived from the mineralization of compost was continuously pumped out from the pots and its direct uptake by the leaves was prevented.¹⁴C of plant parts harvested after the 43 days experimental period were affected by the ¹⁴C of the compost in the treatments where the compost of rice straw was applied, and which suggested that a significant amount of plant carbon was derived from the compost.     

Augmentation of CO2 elimination during high frequency oscillation by removing the bias tube — an in vitro study

In clinical applications of high frequency oscillation (HFO), sufficient CO₂ elimination (V̇_CO2) may represent a problem mainly at higher oscillation frequencies. With the intention of examining how to increase V̇_CO2 a modified bias flow system was investigated in vitro with wash-out experiments. In bias flow systems, long tubes have been used in order to minimize the loss of oscillatory volume; however, a distinct increase of V̇_CO2 was achieved in the present study by removing the bias tube. This impovement occurred over the whole frequency range of 2–60 Hz, although the oscillatory volume, effectively delivered to the lungs was smaller with the HFO circuit without bias tube (HFO_−BT) as compared to the arrangement with bias tube (HFO_+BT). A long bias tube flattens the CO₂ concentration gradient from the alveoli to the atmosphere. Removing the bias tube results in a sleeper CO₂ concentration gradient and in a correspondingly enhanced V̇_CO2. Furthermore, the large oscillatory volume at the exit of the bias flow system in HFO_−BT supports V̇_CO2 as an additional wash-out mechanism. Based upon longitudinal tracer gas concentration measurements between the alveoli and the atmosphere during HFO^16,17, an increase of gas transport up to 20% can be expected for in vivo applications by removing the bias tube.     

An increased frequency of structural chromosome aberrations in persons present in the vicinity of Chernobyl during and after the reactor accident. Is this effect caused by radiation exposure?

About a week after the reactor accident in Chernobyl, a number of German citizens returned to the Federal Republic of Germany from different places of residence in the U.S.S.R. Chromosome analyses of these individuals show a surprisingly significant increase in dicentric chromosomes in comparison to the laboratory control. Acentrics are nearly twice as frequent as dicentrics. Centric rings are also in evidence. Chromatid breaks do not significantly differ from the control with the exception of 1 place of residence. The frequency of aberrations is too high to be induced by absorbed doses calculated physically or by modelling techniques. So far, no explanation is available for the discrepancy-a factor of about 100-between calculated absorbed doses and the measured biological effect.