A quantitative cytochemical method for phosphofructokinase in plant tissues

A quantitative cytochemical method for the demonstration of phosphofructokinase has been successfully applied to a range of plant tissues. The findings indicate that this enzyme system may be assayed as an indicator of glycolytic activity in plant cells, and furthermore tha the very high endogenous phosphoenolpyruvate concentrations may not be rate limiting in vivo.     

A model for water uptake by plant roots

We present a model for water uptake by plant roots from unsaturated soil. The model includes the simultaneous flow of water inside the root network and in the soil. It is constructed by considering first the water uptake by a single root, and then using the parameterized results thereby obtained to build a model for water uptake by the developing root network. We focus our model on annual plants, in particular the model will be applicable to commercial monocultures like maize, wheat, etc. The model is solved numerically, and the results are compared with approximate analytic solutions. The model predicts that as a result of water uptake by plant roots, dry and wet zones will develop in the soil. The wet zone is located near the surface of the soil and the depth of it is determined by a balance between rainfall and the rate of water uptake. The dry zone develops directly beneath the wet zone because the influence of the rainfall at the soil surface does not reach this region, due to the nonlinear nature of the water flow in the partially saturated soil. We develop approximate analytic expressions for the depth of the wet zone and discuss briefly its ecological significance for the plant. Using this model we also address the question of where water uptake sites are concentrated in the root system. The model indicates that the regions near the base of the root system (i.e. close to the ground surface) and near the root tips will take up more water than the middle region of the root system, again due to the highly nonlinear nature of water flow in the soil.     

A quantitative and dynamic model for plant stem cell regulation

Plants maintain pools of totipotent stem cells throughout their entire life. These stem cells are embedded within specialized tissues called meristems, which form the growing points of the organism. The shoot apical meristem of the reference plant Arabidopsis thaliana is subdivided into several distinct domains, which execute diverse biological functions, such as tissue organization, cell-proliferation and differentiation. The number of cells required for growth and organ formation changes over the course of a plants life, while the structure of the meristem remains remarkably constant. Thus, regulatory systems must be in place, which allow for an adaptation of cell proliferation within the shoot apical meristem, while maintaining the organization at the tissue level. To advance our understanding of this dynamic tissue behavior, we measured domain sizes as well as cell division rates of the shoot apical meristem under various environmental conditions, which cause adaptations in meristem size. Based on our results we developed a mathematical model to explain the observed changes by a cell pool size dependent regulation of cell proliferation and differentiation, which is able to correctly predict CLV3 and WUS over-expression phenotypes. While the model shows stem cell homeostasis under constant growth conditions, it predicts a variation in stem cell number under changing conditions. Consistent with our experimental data this behavior is correlated with variations in cell proliferation. Therefore, we investigate different signaling mechanisms, which could stabilize stem cell number despite variations in cell proliferation. Our results shed light onto the dynamic constraints of stem cell pool maintenance in the shoot apical meristem of Arabidopsis in different environmental conditions and developmental states.     

A mechanics model for the compression of plant and vegetative tissues

The mechanics analysis of plant or vegetable tissue under a compressive stress has been developed based on large deformation elasticity theory. The tissue was treated as a lattice of regular perfect three-dimensional hexagonal cells. The cell walls were assumed to be impermeable under the time-scale of the loading. The cell walls of plants and vegetables are polymeric composite materials, consisting of a relatively amorphous matrix and a highly structured network of microfibrils embedded in the cell wall matrix. The micromechanical features of the individual cells have been related to the macroscopic properties of the whole tissue. The effects of microfibrillar stiffening factors k(1) and k(2), the cell wall matrix property alpha and the initial cell expansion ratio nu(i) on the compressive behaviour of a plant or vegetable tissue have been investigated. The predicted results have also been related to some experimental evidence.     

A model for radial water transport across plant roots

Summary A model based on the canal theory (Katou andFurumoto 1986 a, b) is proposed for the absorption of solute and water at the root periphery. The present canal model in the periphery and the model which was previously proposed for the exudation in the stele (Katou et al. 1987), are organized into a model for radial transport across excised plant roots, in the light of anatomical and physiological knowledge of maize roots. The canal equations for both canals are numerically solved to give quite a good explanation for the observed exudation of maize roots. It is found that the regulation of solute transport has a primary importance in the regulation of water transport across excised roots. The internal cell pressure of the symplast adjusts the water absorption at the root periphery to the water secretion into the vessels. There seems no need for this explanation of the radial water transport across roots to assume cell membranes with low reflection coefficient or variable water permeability. It would seem that the apoplast wall layers play a crucial role in metabolic control of water transport in roots as well as in hypocotyls.Abbreviations J _s ^ex* the theoretically estimated rate of solute exudation per unit surface area of model maize roots - J that of volume exudation per unit surface area of model maize roots - the reflection coefficient of the cell membrane against solutes     

An improved method for quantitative analysis of total fructans in plant tissues

Current methods for measuring fructan levels in plant tissues are time-consuming and costly. They often involve multiple or sequential extractions, enzymatic or acid hydrolysis of fructan polymers, and multiple HPLC runs to quantify fructan-derived hexoses. Here we describe a new method that requires a single extraction step, followed by selective precipitation of fructans by acetone, acid hydrolysis of the precipitate, and a short (10 min) HPLC run to complete the procedure. We used perennial ryegrass samples to show that the new method has similar sensitivity, but better reproducibility, than a more complex method that is widely used. We have used the new method to study developmentally related changes in fructan levels in glasshouse-grown perennial ryegrass plants.     

A model for water transport in the stele of plant roots

Summary The mechanism of water movement across roots is, as yet, not well understood. Some workable black box theories have already been proposed. They, however, assumed unrealistic cell membranes with low values of , or were based on a poor anatomical knowledge of roots. The role of root stele in solute and water transport seems to be especially uncertain. An attempted explanation of the nature of root exudation and root pressure by applying the apoplast canal theory (Katou andFurumoto 1986 a, b) to transport in the root stele is given. The canal equations are solved for boundary conditions based on anatomical and physiological knowledge of the root stele. It is found that the symplast cell membrane, cell wall and net solute transport into the wall apoplast are the essential constituents of the canal system. Numerical analysis shows that the canal system enables the coupled transport of solutes and water into a xylem vessel, and the development of root pressure beyond the level predicted by the osmotic potential difference between the ambient medium and the exudate. Observations on root exudation and root pressure previously reported seem to be explained quite well. It is concluded that the movement of water in the root stele although apparently active is essentially osmotic.Abbreviations J _v ^ex volume exudation per root surface - J₀ non-osmotic exudation - L^r overall radial hydraulic conductivity of an excised root - reflection coefficient - C_s difference in the osmotic concentration between the bathing medium and the exudate - R gas constant - T absolute temperature - C_K molar concentration of K⁺ - C_Cl molar concentration of Cl^– - C_j molar concentration of ion species j - P_j membrane permeability of ion j - z_j valence of ion j - F Faraday constant - V_ix intracellular electric potential with reference to the canal     

A qualitative model for the mechanism of sugar accumulation in cold-stressed plant tissues

Summary Low temperatures induce the accumulation of soluble sugars in plant cells. An attempt is made to identify the primary site of action of low temperatures and the sequence of physiological and biochemical events leading to sugar accumulation. The integration of all the available information points to a central role of increased intracellular calcium ion concentration generated by the inhibition of ATPases concerned with its homeostasis. A positive role of a cold-induced dysfunction of mitochondrial and chloroplast electron flow is also proposed. The biological significance of an explanation of this physiological response to a stress factor relies on its categorization into the major family of those employing alternative energy-producing pathways under stress conditions. More specifically, a connection of sugar mobilization to the needs of the cold-stressed cell to employ fermentative energy-producing mechanisms is made. From this ankle of view, new ways of genetically modifying the ability of plant cells to accumulate sugars become obvious.     

A preliminary empirical model for studying plant productivity based on measurement of CO2 assimilation

Abstract

A preliminary model for estimating plant production on the basis of CO₂ absorption has been developed according to empirical equations defined by fitting data obtained by a portable IRGA. The model has been tested for four forage species in a grassland for which the productivity was estimated by a rotation-mowing method.     

Foliar pathogenesis and plant water relations: a review

As the world population grows, there is a pressing need to improve productivity from water use in irrigated and rain-fed agriculture. Foliar diseases have been reported to decrease crop water-use efficiency (WUE) substantially, yet the effects of plant pathogens are seldom considered when methods to improve WUE are debated. We review the effects of foliar pathogens on plant water relations and the consequences for WUE. The effects reported vary between host and pathogen species and between host genotypes. Some general patterns emerge however. Higher fungi and oomycetes cause physical disruption to the cuticle and stomata, and also cause impairment of stomatal closing in the dark. Higher fungi and viruses are associated with impairment of stomatal opening in the light. A number of toxins produced by bacteria and higher fungi have been identified that impair stomatal function. Deleterious effects are not limited to compatible plant-pathogen interactions. Resistant and non-host interactions have been shown to result in stomatal impairment in light and dark conditions. Mitigation of these effects through selection of favourable resistance responses could be an important breeding target in the future. The challenges for researchers are to understand how the effects reported from work under controlled conditions translate to crops in the field, and to elucidate underlying mechanisms.     

Problems of terminology in the teaching of plant water relations

The considerable variation and confusion in terminology used in the teaching of plant water relations is discussed. The concept of water potential is described briefly and compared with the older concepts of diffusion pressure deficit and suction pressure. The advantages of using water potential terminology are considered. Reference is made to some well-known student texts to illustrate the conflicting meanings of osmotic terms and symbols, and attention is drawn to the problems which arise when authors mix old and new terms. It is recommended that the new terminology should be incorporated into school examination syllabuses and textbooks as soon as possible.     

A mathematical model for water and nutrient uptake by plant root systems

This article deals with modelling the simultaneous uptake of water and highly buffered nutrient, such as phosphate, by root branching structures from partially saturated soil. We use the simultaneous water and nutrient uptake model to investigate the effect that water movement has on nutrient uptake. With the aid of this model we are also able to show that the previous models by Barber and Tinker and Nye systematically underestimated the phosphate uptake, due to the oversimplified approach in dealing with root branching structure. In this article we show how this discrepancy can be remedied and the root branching structure included in the models of plant nutrient uptake. We will also discuss the differences in the results for continuous and spot fertilization combined with variable rainfall.     

A flexible Bayesian model for studying gene-environment interaction

An important follow-up step after genetic markers are found to be associated with a disease outcome is a more detailed analysis investigating how the implicated gene or chromosomal region and an established environment risk factor interact to influence the disease risk. The standard approach to this study of gene–environment interaction considers one genetic marker at a time and therefore could misrepresent and underestimate the genetic contribution to the joint effect when one or more functional loci, some of which might not be genotyped, exist in the region and interact with the environment risk factor in a complex way. We develop a more global approach based on a Bayesian model that uses a latent genetic profile variable to capture all of the genetic variation in the entire targeted region and allows the environment effect to vary across different genetic profile categories. We also propose a resampling-based test derived from the developed Bayesian model for the detection of gene–environment interaction. Using data collected in the Environment and Genetics in Lung Cancer Etiology (EAGLE) study, we apply the Bayesian model to evaluate the joint effect of smoking intensity and genetic variants in the 15q25.1 region, which contains a cluster of nicotinic acetylcholine receptor genes and has been shown to be associated with both lung cancer and smoking behavior. We find evidence for gene–environment interaction (P-value = 0.016), with the smoking effect appearing to be stronger in subjects with a genetic profile associated with a higher lung cancer risk; the conventional test of gene–environment interaction based on the single-marker approach is far from significant.     

A novel model for studying Baculovirus infection process

In this paper, a new Ansatz for modelling the Baculovirus infection cycle is presented. The base of this model is the cell cycle distribution at the time of infection. It is possible to calculate the growth of the culture and the initiation of virus processing by considering cell cycle distribution. By taking into account the length of the viral genome and the polymerase activity, it is possible to calculate the virus production rate, which underlies a logistic growth. In the present work, a new hypothesis explaining the accelerated death rates of infected cells has been introduced. This assumption provides the possibilities of performing calculation without any fixed time intervals. The simulation was tested by comparing experimental data with the model prediction. Therefore, cell cycle distributions over the culture time and the growth behaviour of infected and non-infected insect cells were measured. A model, Baculovirus coding for GFP was employed for the present investigation, as it allows tracking the infection and determining the effectiveness of the infection, which is highly dependent on the cell density at the time of infection (TOI). Furthermore, the new model is is taken to simulate data gained from literature about virus release and adsorption. The new assumptions make the model more independent to fit into different cultivation systems.