Is evolutionary biology becoming too politically correct? A reflection on the scala naturae,phylogenetically basal clades,anatomically plesiomorphic taxa,and ‘lower’ animals

The notion of scala naturae dates back to thinkers such as Aristotle, who placed plants below animals and ranked the latter along a graded scale of complexity from ‘lower’ to ‘higher’ animals, such as humans. In the last decades, evolutionary biologists have tended to move from one extreme (i.e. the idea of scala naturae or the existence of a general evolutionary trend in complexity from ‘lower’ to “higher” taxa, with Homo sapiens as the end stage) to the other, opposite, extreme (i.e. to avoid using terms such as ‘phylogenetically basal’ and ‘anatomically plesiomorphic’ taxa, which are seen as the undesired vestige of old teleological theories). The latter view tries to avoid any possible connotations with the original anthropocentric idea of a scala naturae crowned by man and, in that sense, it can be regarded as a more politically correct view. In the past years and months there has been renewed interest in these topics, which have been discussed in various papers and monographs that tend to subscribe, in general, to the points defended in the more politically correct view. Importantly, most evolutionary and phylogenetic studies of tetrapods and other vertebrates, and therefore most discussions on the scala naturae and related issues have been based on hard tissue and, more recently, on molecular data. Here we provide the first discussion of these topics based on a comparative myological study of all the major vertebrate clades and of myological cladistic and Bayesian phylogenetic analyses of bony fish and tetrapods, including Primates. We specifically (i) contradict the notions of a scala naturae or evolutionary progressive trends leading to more complexity in ‘higher’ animals and culminating in Homo sapiens, and (ii) stress that the refutation of these old notions does not necessarily mean that one should not keep using the terms ‘phylogenetically basal’ and particularly ‘anatomically plesiomorphic’ to refer to groups such as the urodeles within the Tetrapoda, or the strepsirrhines and lemurs within the Primates, for instance. This review will contribute to improving our understanding of these broad evolutionary issues and of the evolution of the vertebrate Bauplans, and hopefully will stimulate future phylogenetic, evolutionary and developmental studies of these clades.     

Scope,phonology and morphology in an agglutinating language: Choguita Rarámuri (Tarahumara) variable suffix ordering

What is the nature of the interaction between scope, phonological conditions and morphologically specified precedence relations in determining affix combinatorics in morphologically complex languages? In depth studies of affix ordering patterns in typologically diverse languages reveal intricate interactions among multiple factors. Mixed scope/template systems, for instance, have been characterized as either involving scope taking precedence over templates [Athabaskan (Rice 2000)], or templates overriding scope [Chichewa (Hyman 2002, 2003) and Pulaar (Paster 2005)]. This paper makes an empirical contribution by documenting a novel type of affix order system of a previously unstudied language, Choguita Rarámuri, a Uto-Aztecan language spoken in Mexico, which features free affix permutation, and which cannot be characterized as either ‘template-emergent’ or ‘scope-emergent’. In this agglutinating language, scope and morphological constraints are freely ranked, with phonological subcategorization overriding all other constraints. This paper also documents how semantically non-compositional suffix sequences may arise through priming effects and morphophonologically conditioned multiple exponence.     

The broader evolutionary lessons to be learned from a comparative and phylogenetic analysis of primate muscle morphology

The present publication reviews the broader evolutionary implications of our long‐term study of primate musculature. It summarizes the implications of the study for our understanding of the use of myological characters for phylogenetic reconstruction, for assessing the importance of homoplasy and reversions in evolution, and for our understanding of Dollo's law, the notion of ‘direction’ in evolution, the common myth of human complexity, the tempo and mode of primate and human evolutionary history, adaptive radiations, the notion that ‘common’ equals ‘primitive’ and the influence of morphogenesis on the variability of head, neck, pectoral and upper limb muscles. Among other results our study shows that myological characters are useful for phylogenetic reconstruction. The results also stress the importance of homoplasy and of evolutionary reversions in morphological evolution, and they provide examples of reversions that violate Dollo's law due to the retention of ancestral developmental pathways. They also show that contrary to the idea of a ‘general molecular slow‐down of hominoids’ the rates of muscle evolution at the nodes leading to and within the hominoid clade are higher than those in most other primate clades. However, there is no evidence of a general trend or ‘directionality’ towards an increasing complexity during the evolutionary history of hominoids and of modern humans in particular, at least regarding the number of muscles or of muscle bundles. The rates of muscle evolution at the major euarchontan and primate nodes are different, but within each major primate clade (Strepsirrhini, Platyrrhini, Cercopithecidae and Hominoidea) the rates at the various nodes, and particularly at the nodes leading to the higher groups (i.e. those including more than one genus) are strikingly similar. Our results also support, in general terms, the assumption that ‘common is primitive’ and they lend some support for the ‘vertebrate‐specific model’ in the sense that during the divergent events that resulted in these four major primate clades there was more emphasis on postcranial changes than on cranial changes. Our study of primates does not, however, support suggestions that the distal structures of the upper limb are more prone to variation than the proximal ones, or that the topological origins of the upper limb muscles are more prone to evolutionary change than their insertions.     

A neuropsychological perspective on the link between language and praxis in modern humans

Hypotheses about the emergence of human cognitive abilities postulate strong evolutionary links between language and praxis, including the possibility that language was originally gestural. The present review considers functional and neuroanatomical links between language and praxis in brain-damaged patients with aphasia and/or apraxia. The neural systems supporting these functions are predominantly located in the left hemisphere. There are many parallels between action and language for recognition, imitation and gestural communication suggesting that they rely partially on large, common networks, differentially recruited depending on the nature of the task. However, this relationship is not unequivocal and the production and understanding of gestural communication are dependent on the context in apraxic patients and remains to be clarified in aphasic patients. The phonological, semantic and syntactic levels of language seem to share some common cognitive resources with the praxic system. In conclusion, neuropsychological observations do not allow support or rejection of the hypothesis that gestural communication may have constituted an evolutionary link between tool use and language. Rather they suggest that the complexity of human behaviour is based on large interconnected networks and on the evolution of specific properties within strategic areas of the left cerebral hemisphere.     

Entropy and the conceit of biodiversity management

Many conservation biologists and ecologists consider invasive species to be one of the greatest threats to biodiversity because their spread across biogeographical boundaries may endanger unique and localized expressions of biodiversity (whether species or communities). Consequently, they imagine a future, the ‘Homogocene’, in which a small set of species dominates ecosystems around the world, and they promote policies and practices to lessen the spread of these species. Here, we consider some thermodynamic dimensions of the efforts to maintain current biogeographical boundaries. We wish to explore an important conceptual analogy between thermodynamically‐closed systems and isolated biogeographical regions in ecology. The conceptual tools developed in the context of thermodynamic systems can be shown to have relevance in a wide variety of systems contexts. The ‘Maxwell's demon’ thought experiment suggests that entropy is best thought of as information‐relative rather than a ‘law of nature’. Adopting this Maxwellian thermodynamic approach to managing complexity can shed new light on the challenges of biodiversity management. To prevent the dispersion of invasive species, people must invest energy on a scale to counteract global trade and concomitant dispersal of species. We show that removing barriers to species interaction through globalization is akin to allowing a previously isolated thermal system to interact with its environment; in both cases, the system will tend towards mixing or ‘equilibrium’, and fighting this tendency is costly. Unless social and economic integration declines, the energetic input required to lessen the spread of invasive species will continue to grow.     

Design principles and developmental mechanisms underlying retinal mosaics

Most structures within the central nervous system (CNS) are composed of different types of neuron that vary in both number and morphology, but relatively little is known about the interplay between these two features, i.e. about the population dynamics of a given cell type. How such arrays of neurons are distributed within a structure, and how they differentiate their dendrites relative to each other, are issues that have recently drawn attention in the invertebrate nervous system, where the genetic and molecular underpinnings of these organizing principles are being revealed in exquisite detail. The retina is one of the few locations where these principles have been extensively studied in the vertebrate CNS, indeed, where the design principles of ‘mosaic regularity’ and ‘uniformity of coverage’ were first explicitly defined, quantified, and related to each other. Recent studies have revealed a number of genes that influence the formation of these histotypical features in the retina, including homologues of those invertebrate genes, although close inspection reveals that they do not always mediate comparable developmental processes nor elucidate fundamental design principles. The present review considers just how pervasive these features of ‘mosaic regularity’ and ‘uniform dendritic coverage’ are within the mammalian retina, discussing the means by which such features can be assessed in the mature and developing nervous system and examining the limitations associated with those assessments. We then address the extent to which these two design principles co‐exist within different populations of neurons, and how they are achieved during development. Finally, we consider the neural phenotypes obtained in mutant nervous systems, to address whether a prospective gene of interest underlies those very design principles.     

Measurement and interpretation of fluorescence polarisations in phospholipid dispersions

An instrument that measures the temperature dependence of fluorescence polarisation and intensity directly and continuously is described. The behaviour of four fluorescent probes bound to a number of well characterised model systems was then examined. The motional properties of the probes were determined from the polarisation and intensity data and were found to be sensitive to the crystallineliquid crystalline phase transitions in phospholipid vesicles of dimyristoyl and dipalmitoyl phosphatidylcholine. Binary mixture of dilauroyl and dipalmitoyl phosphatidycholine show lateral phase separation and in this system the probes partition preferentially into the more ‘fluid’ phase. In systems that have been reported to contain ‘short range order’ or ‘liquid clustering’, such as dioleoyl phosphatidylcholine and liquid paraffin, the motion of the probes was found to have anomalous Arrhenius behaviour consistent with the idea that homogeneous phases were not being sampled. The significance of these findings for the interpretation of the behaviour of fluorescent probes bound to natural membranes is discussed.     

Sensitivity of the Welfare Quality® broiler chicken protocol to differences between intensively reared indoor flocks: which factors explain overall classification?

There is a large demand for holistic welfare assessment systems that result in a singular balanced summary of welfare. The Welfare Quality® (WQ) broiler protocol summarizes 18 welfare measures into four principles (‘good feeding’, ‘good housing’, ‘good health’ and ‘appropriate behaviour’), which are then integrated into one overall category (‘excellent’, ‘enhanced’, ‘acceptable’ or ‘not classified’). But the protocol is time consuming which hampers implementation. Furthermore, WQ’s aim to assess animal welfare in a wide range of husbandry systems may decrease its ability to discriminate between flocks from the same system. We applied the protocol in the context of intensive indoor rearing to assess whether it discriminated sufficiently between flocks, could be shortened without losing essential information, and provided a balanced summary of welfare. The vast majority of the flocks (88%) received the same overall classification (acceptable) whilst all other flocks received an adjacent classification (enhanced), suggesting poor discriminative capacity. For 95% of the flocks overall classification was explained by two measures only (‘drinker space’ and ‘stocking density’). A system based on these two measures would reduce assessment time from 3.5 h to a few minutes. However, both measures’ validity can be questioned as they are risk factors for poor welfare rather than animal-based outcome measures and they suffer from methodological weaknesses. Furthermore, the possibility for such an extreme simplification raises doubts on whether the overall classification reflects a balanced summary of different welfare aspects. In line with this, overall classification was not affected by replacing single measures within the ‘good health’ and ‘appropriate behaviour’ principles with realistically attainable minima or maxima for intensively reared flocks. Even replacing either of these two principles entirely with their realistically obtainable minimum or maximum did not affect classification. Such insensitivity to change may discourage attempts to improve the welfare of intensively reared flocks when assessments are made based on the overall classification. This calls for an adjustment of the classification system, which is currently being developed by the Welfare Quality Network.     

Culture and the Trajectories of Developmental Pathology: Insights from Control and Information Theories

Cognition in living entities—and their social groupings or institutional artifacts—is necessarily as complicated as their embedding environments, which, for humans, includes a particularly rich cultural milieu. The asymptotic limit theorems of information and control theories permit construction of a new class of empirical ‘regression-like’ statistical models for cognitive developmental processes, their dynamics, and modes of dysfunction. Such models may, as have their simpler analogs, prove useful in the study and re-mediation of cognitive failure at and across the scales and levels of organization that constitute and drive the phenomena of life. These new models particularly focus on the roles of sociocultural environment and stress, in a large sense, as both trigger for the failure of the regulation of bio-cognition and as ‘riverbanks’ determining the channels of pathology, with implications across life-course developmental trajectories. We examine the effects of an embedding cultural milieu and its socioeconomic implementations using the ‘lenses’ of metabolic optimization, control system theory, and an extension of symmetry-breaking appropriate to information systems. A central implication is that most, if not all, human developmental disorders are fundamentally culture-bound syndromes. This has deep implications for both individual treatment and public health policy.     

Do human ‘life history strategies’ exist?

Interest in incorporating life history research from evolutionary biology into the human sciences has grown rapidly in recent years. Two core features of this research have the potential to prove valuable in strengthening theoretical frameworks in the health and social sciences: the idea that there is a fundamental trade-off between reproduction and health; and that environmental influences are important in determining how life histories develop. However, the literature on human life histories has increasingly travelled away from its origins in biology, and become conceptually diverse. For example, there are differences of opinion between evolutionary researchers about the extent to which behavioural traits associate with life history traits to form ‘life history strategies’. Here, I review the different approaches to human life histories from evolutionary anthropologists, developmental psychologists and personality psychologists, in order to assess the evidence for human ‘life history strategies’. While there is precedent in biology for the argument that some behavioural traits, notably risk-taking behaviour, may be linked in predictable ways with life history traits, there is little theoretical or empirical justification for including a very wide range of behavioural traits in a ‘life history strategy’. Given the potential of life history approaches to provide a powerful theoretical framework for understanding human health and behaviour, I then recommend productive ways forward for the field: 1) greater focus on the life history trade-offs which underlie proposed strategies; 2) greater precision when using the language of life history theory and life history strategies; 3) collecting more empirical data, from a diverse range of populations, on linkages between life history traits, behavioural traits and the environment, including the underlying mechanisms which generate these linkages; and 4) greater integration with the social and health sciences.     

Anthropology at Home in Australia

This introductory essay takes ‘anthropology at home’ to refer to the conduct of fieldwork and other kinds of anthropological research in or about communities which Australian anthropologists regard as culturally familiar. In that sense, anthropology at home raises two interrelated questions: 1) ‘What is an appropriate anthropological object?’ and 2) ‘What are the appropriate methods for studying that object?’ I argue that anthropology remains overdetermined by its colonial heritage and that it is still overly concerned with the study of ‘the other’ through long-term fieldwork. My feeling is that we should displace the idea of ‘the other’ in favour of an anthropological object construed in terms of self-other relationships. This not only implies that anthropology at home should cease to appear as an oxymoron, but also suggests that a more comprehensive employment of various study methods should displace long-term fieldwork as metonymic of the discipline.     

Digital ‘faces’ of synthetic biology

In silicio design plays a fundamental role in the endeavour to synthesise biological systems. In particular, computer-aided design software enables users to manage the complexity of biological entities that is connected to their construction and reconfiguration. The software’s graphical user interface bridges the gap between the machine-readable data on the algorithmic subface of the computer and its human-amenable surface represented by standardised diagrammatic elements. Notations like the Systems Biology Graphical Notation (SBGN), together with interactive operations such as drag & drop, allow the user to visually design and simulate synthetic systems as ‘bio-algorithmic signs’. Finally, the digital programming process should be extended to the wet lab to manufacture the designed synthetic biological systems. By exploring the different ‘faces’ of synthetic biology, I argue that in particular computer-aided design (CAD) is pushing the idea to automatically produce de novo objects. Multifaceted software processes serve mutually aesthetic, epistemic and performative purposes by simultaneously black-boxing and bridging different data sources, experimental operations and community-wide standards. So far, synthetic biology is mainly a product of digital media technologies that structurally mimic the epistemological challenge to take both qualitative as well as quantitative aspects of biological systems into account in order to understand and produce new and functional entities.     

Interactions of ecosystem properties,ecosystem integrity and ecosystem service indicators—A theoretical matrix exercise

The ecosystem service concept is becoming more and more acknowledged in science and decision-making, resulting in several applications in different case studies and in environmental management, but still it is developing in terms of definitions, typologies and understanding its complexity. By examining the interrelations between ecosystem properties, ecosystem integrity, biodiversity, ecosystem services and human well-being qualitatively, the mutual influences on each constituent of the ‘ecosystem service cascade’ are illuminated, giving an impulse for further discussions and improvements for a better understanding of the complexity of human–environmental systems. Results of the theoretical interactions are among others the assumption that provisioning services exclude or compete with each other, while the role of biodiversity was found to be supporting for regulating services and cultural services. Ecosystem services meet the criteria of being adequate human–environmental system indicators and therefore, they are an appropriate instrument for decision-making and management.     

Shifting Places,Contested Spaces: Land and Identity Politics in the Pacific1

This paper considers the contemporary problematics surrounding the identification of persons with land which is one of the central features of Pacific societies. The movements of people and conflicts of control over land and other resources in the context of emergent capitalism have produced these problematics. A local contrast is drawn between the Western and Southern Highlands Provinces in Papua New Guinea in terms of two historical moments: transformations of land into exchange and transformations of exchange into land. These represent different historical responses to capitalist expansion in the ‘coffee-tea belt’ of the Western Highlands and the ‘oil-gas belt’ of the Southern Highlands. The response of the Western Highlanders to their predicaments, couched in terms of Christian ideas, is depicted, and a general suggestion is made that we need a stream of problem-oriented studies focusing on the contradictions between ‘practice’ and ‘custom’ in issues over land in the Pacific, as argued recently also by Anthony Hooper and Gerard Ward; on the changing meanings attributed to money and wealth; and on attempts by people to reassert their local senses of identity, while accommodating themselves to and using the frameworks or the language of outside forces, whether national or global. A new wave of ethnographic writing is needed to encompass the analysis of contemporary complexities of life in Papua New Guinea and elsewhere in the Pacific and of the prevalent symbolism of the millennium or ‘end times’.     

The language of everyday racism and microaggression in the workplace: Palestinian professionals in Israel

Based on interviews with Palestinian professionals in Jewish organizations in Israel, this article discloses a distinctive practice of ‘everyday racism’ and microaggression – a language of everyday racism. This ‘language of everyday racism’ refers to Hebrew words and expressions that are routinely used by Jews in their mundane conversations and that include the word ‘Arab’ when describing a deficiency or defect, some sort of unsightliness, filth, or general negativity (as in the expression ‘You're dressed like an Arab woman’). This article not only describes the language of everyday racism as a specific form of everyday racism and microaggression (national microaggression), it also illustrates how this language activates the Palestinian professionals in a reflexive manner. The discussion section describes how the internal dialectic between structure and agency is critical to understanding the language of everyday racism, which in turn acts as a mechanism of the inequality that underlies face-to-face interactions.     

Exergy‐Based Population Dynamics

This article discusses whether “sustainability” has a physical meaning in applied thermodynamics. If it has, then it should be possible to derive general principles and rules for devising “sustainable systems.” If not, then other sides of the issue retain their relevance, but thermodynamic laws are not appropriate by themselves to decide whether a system or a scenario is sustainable. Here, we make use of a single axiom: that final consumption (material or immaterial) can be quantified solely in terms of equivalent primary exergy flows. On this basis, we develop a system theory that shows that if “simple” systems are based solely on the exploitation of fossil resources, they cannot be thermodynamically “sustainable.” But as renewable resources are brought into the picture and the system complexity grows, there are thresholds below or beyond which the system exhibits an ability to maintain itself (perhaps through fluctuations), in a self‐preserving (i.e., a sustainable) state. It appears that both complexity and the degree of nonlinearity of the transfer functions of the systems play a major role and—even for some of the simplest cases—lead to nontrivial solutions in phase space. Therefore, even if the examples presented in the article can be considered rather crude approximations to real, complex systems at best, the results show a trend that is worth further consideration.