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1.
We consider the problem of estimating the number of species (denoted by S) of a biological community located in a region divided into n quadrats. To address this question, different hierarchical parametric approaches have been recently developed. Despite a detailed modeling of the underlying biological processes, they all have some limitations. Indeed, some assume that n is theoretically infinite; as a result, n and the sampling fraction are not a part of such models. Others require some prior information on S to be efficiently implemented. Our approach is more general in that it applies without limitation on the size of n, and it can be used in the presence, as well as in the absence, of prior information on S. Moreover, it can be viewed as an extension of the approach of Dorazio and Royle (2005, Journal of the American Statistical Association 100, 389-398) in that n is a part of the model and a prior distribution is placed on S. Despite serious computational difficulties, we have perfected an efficient Markov chain Monte Carlo algorithm, which allows us to obtain the Bayesian estimate of S. We illustrate our approach by estimating the number of species of a bird community located in a forest. 相似文献
2.
Summary A number of species richness estimators have been developed under the model that individuals (or sampling units) are sampled with replacement. However, if sampling is done without replacement so that no sampled unit can be repeatedly observed, then the traditional estimators for sampling with replacement tend to overestimate richness for relatively high-sampling fractions (ratio of sample size to the total number of sampling units) and do not converge to the true species richness when the sampling fraction approaches one. Based on abundance data or replicated incidence data, we propose a nonparametric lower bound for species richness in a single community and also a lower bound for the number of species shared by multiple communities. Our proposed lower bounds are derived under very general sampling models. They are universally valid for all types of species abundance distributions and species detection probabilities. For abundance data, individuals' detectabilities are allowed to be heterogeneous among species. For replicated incidence data, the selected sampling units (e.g., quadrats) need not be fully censused and species can be spatially aggregated. All bounds converge correctly to the true parameters when the sampling fraction approaches one. Real data sets are used for illustration. We also test the proposed bounds by using subsamples generated from large real surveys or censuses, and their performance is compared with that of some previous estimators. 相似文献
3.
We consider the problem of estimating the number of species of an animal community. It is assumed that it is possible to draw up a list of species liable to be present in this community. Data are collected from quadrat sampling. Models considered in this article separate the assumptions related to the experimental protocol and those related to the spatial distribution of species in the quadrats. Our parameterization enables us to incorporate prior information on the presence, detectability, and spatial density of species. Moreover, we elaborate procedures to build the prior distributions on these parameters from information furnished by external data. A simulation study is carried out to examine the influence of different priors on the performances of our estimator. We illustrate our approach by estimating the number of nesting bird species in a forest. 相似文献
4.
We developed a nested vegetation sampling protocol to sample the plant diversity on south-facing cliffs and cliff bases in
Jefferson County, Colorado. The multi-scale plots included three nested spatial scales, 1 m2, 20 m2, and 40 m2. We compared plant species richness and species diversity among large cliffs, medium cliffs, small cliffs, and non-cliff
sites using Hill's diversity numbers (N
0, N
1, and N
2) for the 1-m2 quadrats. Species richness (N
0) was calculated for the 20-m2 and 40-m2 plots. Our results indicate that plant species diversity on the cliff faces did not increase with increasing cliff area.
This pattern was consistent at all three sampling scales. A model selection was run to determine if plant species diversity
values on the cliff faces were associated with cliff variables. None of the cliff variables measured were good predictors
of diversity at the 1-m2 scale. However, at the 20-m2 scale, canyon differences and a positive relationship with increasing cliff surface roughness explained 70% of the variability
in species richness. Although most plant species sampled on the cliff faces were also found in the base plots, 13 species
were sampled only on the cliff faces. Additionally, dry south facing cliffs support a mix of xeric and mesic plants indicating
that cliffs may provide unique microenvironments for plant establishment.
This revised version was published online in August 2006 with corrections to the Cover Date. 相似文献
5.
Line L. Sørensen 《Biodiversity and Conservation》2004,13(2):437-452
Spiders were sampled using insecticide knockdown in an African montane forest in the Uzungwa Mountains of Tanzania. The results are used to discuss the faunal composition at the site and in comparison to other sites, and the implications of the results for estimating spider diversity in Africa are discussed. A total of 5233 adults comprising 149 species were collected from 11 samples covering a total of 906 m2 of projected area. Three species contributed 45% of the sample. Previous insecticide knockdown studies of tropical lowland forest canopies have shown a dominance of Theridiidae, Salticidae and Araneidae. In the present study Linyphiidae dominated in abundance and were the second most diverse in terms of species richness. Other abundant families were Oonopidae and Pholcidae, while Theridiidae, Salticidae and Araneidae were rich in species. This supports a previous study, which indicated that the importance of linyphiids increases with altitude. Species richness was predicted using a number of estimators, which produced relatively similar results. Using the abundance-based estimator, Chao 1, the predicted richness for the total area sampled is 183 ± 15 species. This indicates that at least 20% of the area's spider community remains unsampled. A high ratio of undescribed species (approximately 80%) and a relatively high species turnover compared to a site 20 km away within the same forest complex suggests that the number of spiders in Africa could well be much higher than the current, published estimate of 20000 species. 相似文献
6.
Few studies exist documenting changes in rotifer communities over long time intervals. Here, we explore seasonal and long-term
variation in rotifer communities in four Polish lakes sampled in 1976 and again in 1997. Rarefied, asymptotic species richness
did not differ significantly across study years, although values in 1997 tended to be higher. Simpson’s and Shannon–Wiener
diversity measures provided inconsistent temporal results, with only the former indicating significantly higher richness in
1997. Sorensen’s coefficient of community similarity was as high among lakes in 1976 (0.81) and in 1997 (0.76) as within lakes
across the 21-year span (0.77). Nonlinear redundancy analysis of species’ abundances revealed large, consistent seasonal changes
across lakes, smaller consistent shifts between sampling periods, and small differences between lakes. Collectively, these
metrics indicate that species composition was relatively stable among lakes within years and within lakes between years, while
species’ abundance patterns were far more variable and most affected by season.
Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.
Handling editor: S. I. Dodson 相似文献
7.
We examined species turnover in stream amphibians in rainforest in two hill ranges (Ashambu and Anamalai Hills) in the Western
Ghats in south India. In each hill range, six stream segments (100 m in length) belonging to three drainage or rivers were
surveyed three to four times in three seasons over 1 year. Species turnover (using 1-Sorenson's index) was estimated between
all possible pairs of sites at three spatial scales – within drainage, between drainage and between hill ranges. Similar matrices
were also developed for altitudinal difference and geographic distance between sites. A total of 30 species in four families
were recorded from 3681 individuals. The hill ranges differed significantly in the composition of the stream community at
both the species and family levels. Within the hill range, species turnover was correlated with altitudinal difference and
not with geographic distance. Anamalai Hills had a greater species turnover than Ashambu Hills, both within and between drainage.
There was also a high turnover between these two hill ranges, with only two shared species. This turnover explains the fact
that only 30–40 species have been reported from different hill ranges, although regional diversity is high with about 130
species. The turnover also predicts that several undetected species should occur in hill ranges and drainage that have not
been surveyed. The conservation model for mammals and birds, consisting of a few large protected areas, may not adequately
address the conservation requirements of amphibians. Protection of rainforest frogs may require many protected areas in different
drainages. 相似文献
8.
The insect orders Megaloptera and Neuroptera are closely related members of the superorder Neuropterida, a relict lineage of holometabolous insects that also includes the Raphidoptera. Megaloptera, composed of the families Sialidae and Corydalidae (including subfamilies Chauliodinae and Corydalinae), has fully aquatic larvae that occur in a wide variety of lotic and lentic habitats, including temporary streams. In total, 2 of 17 families of Neuroptera have aquatic larvae: Nevrorthidae live in the benthos of fast-flowing streams and Sisyridae reside on freshwater sponges. A third family of Neuroptera, Osmylidae, contains some water-dependent species that reside under leaves and rocks along the margins of waterbodies. We recognize 328 extant, described species of Megaloptera (composed of 116 species of Chauliodinae, 131 species of Corydalinae, and 81 species of Sialidae) and 73 species of aquatic Neuroptera (composed of 12 species of Nevrorthidae and 61 species of Sisyridae). Additionally, we estimate that 45 species of Osmylidae are water-dependent, although the ecology of this group is poorly understood. Chauliodinae and Corydalidae are both found in the New World, the Oriental region, and South Africa, but are absent from Europe, the Middle East, Central Asia, tropical Africa, and boreal regions. Chauliodinae is quite speciose in Australia, whereas Corydalinae is absent. Sialidae is most speciose in temperate regions, and is absent from tropical Africa and portions of the Oriental region. Sisyridae and Osmylidae are nearly cosmopolitan, but the relict family Nevrorthidae is limited to Japan, the Mediterranean, and Australia. The discovery of many new species in recent years, particularly among Corydalidae in the Neotropics and China, suggests that our knowledge of aquatic neuropterid diversity is far from complete. Guest editors: E. V. Balian, C. Lévêque, H. Segers and K. Martens Freshwater Animal Diversity Assessment 相似文献
9.
Woody species diversity influences productivity and soil nutrient availability in tropical plantations 总被引:2,自引:0,他引:2
We investigated the relationship between plant diversity and ecological function (production and nutrient cycling) in tropical
tree plantations. Old plantations (65–72 years) of four different species, namely Araucaria cunninghamii, Agathis robusta, Toona ciliata and Flindersia brayleyana, as well as natural secondary forest were examined at Wongabel State Forest, in the wet tropics region of Queensland, Australia.
Two young plantations (23 years) of Araucaria cunninghamii and Pinus caribaea were also examined. The close proximity of the older plantations and natural forests meant they had similar edaphic and climatic
conditions. All plantations had been established as monocultures, but had been colonised by a range of native woody plants
from the nearby rainforest. The extent to which this had occurred varied with the identity of the plantation species (from
2 to 17 species in 0.1 ha blocks). In many cases these additional species had grown up and joined the forest canopy. This
study is one of the few to find a negative relationship between overstorey plant diversity and productivity. The conversion
of natural forest with highly productive, low-diversity gymnosperm-dominated plantations (young and old Araucaria cunninghamii and Pinus caribaea) was found to be associated with lower soil nutrient availability (approximately five times less phosphorus and 2.5 times
less nitrogen) and lower soil pH (mean = 6.28) compared to the other, less productive plantations. The dominant effects of
two species, Araucaria cunninghamii and Hodgkinsonia frutescens, indicate that ecosystem functions such as production and nutrient availability are not determined solely by the number of
species, but are more likely to be determined by the characteristics of the species present. This suggests that monoculture
plantations can be used to successfully restore some functions (e.g. nutrient cycling and production), but that the level
to which such functions can be restored will depend upon the species chosen and site conditions.
Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users. 相似文献
10.
In order to tackle the current biodiversity crisis, a plethora of tempting shortcuts, such as the surrogate species approach, have recently been used to pinpoint important areas for protection. At the same time, species-specific conservation programmes are implemented in order to ameliorate the status of target threatened species. In the cases where species-specific programmes are evaluated and found to provide no apparent benefit to the target species, it is important to evaluate whether such conservation efforts may benefit other taxa sharing the same landscape with the target species. Here we assess the surrogacy potential of white-tailed sea eagle (WTSE) nesting habitat as indicator of biodiversity richness (using vascular plants and fungi as surrogated taxa) on islands of the Archipelago Sea in South-western Finland. We compared species richness on islands with and without a WTSE nest. We found weak evidence that islands with a WTSE nest support higher richness of vascular plants than islands without a nest. Conversely, we found no evidence that WTSE nests could be valid surrogates for fungi species inhabiting old-growth forests. Within the spatio-temporal and ecological limits of the present study, we suggest that the nesting habitat of WTSE may hold some surrogate potential for taxa, such as vascular plants, that may indicate high habitat diversity. This finding however remains to be confirmed. At the same time, it appears evident that the WTSE nesting habitat has poor surrogate potential with regards to old-growth forests. Overall, our findings line up with a growing body of other studies calling for caution and careful evaluation of the surrogacy efficiency of single species. 相似文献
11.
The relationship between productivity and multiple aspects of biodiversity in six grassland communities 总被引:2,自引:0,他引:2
David R. Chalcraft Brian J. Wilsey Christy Bowles Michael R. Willig 《Biodiversity and Conservation》2009,18(1):91-104
Biodiversity is a multifaceted concept but most studies examining the association between the biodiversity of a community
and its productivity focus only on species richness. Consequently, studies are needed to examine how other facets of biodiversity
vary with productivity if we want to have a better understanding of the distribution of biodiversity across our planet. We
evaluated how a number of biodiversity measures (species richness, evenness, dominance, rarity, Simpson’s diversity, and Shannon–Weiner
diversity) varied across natural productivity gradients at 6 grassland sites in the continental US. Variation in productivity
did not account for a substantial amount of variation in any measure of biodiversity at small spatial scales (≈1 m2) at most sites. When productivity accounted for substantial variation in biodiversity, different measures of biodiversity
responded to productivity in different ways. For example, dominance changed in a U-shaped fashion along a productivity gradient
whereas richness increased in an asymptotic fashion. Consequently, diversity indices, which account for both species richness
and evenness, varied in a hump-shaped fashion along the productivity gradient. Our results highlight that an exclusive focus
on the association between species richness and productivity provides an incomplete picture of how a community’s biodiversity
is related to its functioning. 相似文献
12.
14.
云南大理人工松林中小兽群落与生态因子的关系 总被引:1,自引:0,他引:1
本文比较了云南大理不同年龄的人工松林(5-8年、10-15年、16-20年)中小兽群落的物种多度、多样性和主要小兽的丰富度,研究了小兽与森林栖境因子(乔木的密度、覆盖度和森林底层灌木和草本植物的覆盖度、密度、物种多度)的关系,探讨了小兽群落在中国西南人工森林的演替,以及地表植物和森林覆盖度对小兽群落的影响。研究结果显示,地表植物的物种多度和丰富度随着森林的年龄增长而增大,但是小兽群落的物种多度和多样性随着森林年龄的增长而变小。小兽与森林栖境因子的回归关系显示小兽群落的物种多度和多样性与地表植物(PC1)成负相关关系。小兽群落的优势物种随着森林的年龄有明显的演替。在年龄最小的森林(5-8年)中,大绒鼠(E.miletu)和齐氏姬鼠(A.chevrieri)是优势物种;在10-15年森林齐氏姬鼠(A.chevrieri)和锡金小鼠(M.pahari)是优势物种;在年龄最大的森林(16-20年)中,贝氏树(T.belangeri)和珀氏长吻松鼠(D.pernyi)成为优势物种 相似文献
15.
16.
Fisher's alpha is a satisfactory scale-independent indicator of biodiversity. However, alpha may be underestimated in communities in which the spatial arrangement of individuals is strongly clustered, or in which the total number of species does not tend to infinity. We have extended Fisher's curve to allow for an accurate calibration of Fisher's alpha in such communities. In spite of its good performance, the use of this extended curve is complicated by its optimization procedure. Therefore, we have simulated the extended Fisher curve by modifying the smooth expolinear curve, using three ecologically meaningful parameters only, i.e. Fisher's alpha, a coefficient describing the effects of clustering and the maximum number of species. The resulting equations successfully describe species-individual relationships from both spatial and temporal observations on both plant and animal communities. This family of equations combines three advantages: Fisher's alpha can be quantified more accurately, the number of estimated parameters is flexible and can be kept to a minimum, while all parameters can legitimately be compared across sites. 相似文献
17.
祁连山区不同海拔草地群落的物种多样性 总被引:16,自引:2,他引:16
依据植物在各海拔带出现的频率和不同海拔带植物种的生活型,对祁连山区草地群落海拔2500~3000m的物种α多样性变化特征进行了研究.结果表明,随海拔升高,Shahnon-Wiener指数从1.432上升到1.832,Simpson指数的变化较为复杂.海拔2701~2800m带是物种多样性的一个重要转折点,是物种多样性较丰富的地带.在祁连山草地群落中,有毒的与食性较差的物种在各海拔带所占比例均超过50%,生物量占到整个样地生物量的60%以上,物种多样性已呈现衰退. 相似文献
18.
F. William H. Beamish Phannee Sa-ardrit Sumpun Tongnunui 《Environmental Biology of Fishes》2006,76(2-4):237-253
Cyprinids were sampled, by electrofishing, from 159 sites on small rivers in four major watersheds across central Thailand. Total abundance, estimated by the depletion method, varied directly with water velocity and, inversely with discharge while species richness varied inversely with habitat width and, directly with ambient oxygen and alkalinity. Numerical abundance of cyprinids was well above that for any of the other 27 families of fishes represented in the catches. Incidence of occurrence was high only for a few cyprinid species in each watershed with most species present in ≤10% of the sites. Across all sites, cyprinids represented approximately 35% of all species captured and were absent from only two sites. Species richness was highest in the Maeklong watershed. Canonical correspondence analysis identified five significant habitat variables, temperature, habitat width, discharge, ambient oxygen and alkalinity, and the extent to which each influenced the distribution of the 41 cyprinid species. The results are discussed in relation to environmental factors and ecological adaptations. 相似文献
19.
以物种组成较为复杂的青藏高原东部地区典革高寒草甸植物群落为背景,从不同的时间和空间尺度水平研究了植物群落中物种丰富度与生产力(地上部生物量)关系的基本模式。结果表明:1)总体而言,高寒草甸植物群落中物种丰富度与生产力的关系呈对数线性增加关系,这实际上是空间和时间尺度放大时在时间和空间尺度的相互作用下高寒草甸植物群落中物种丰富度与生产力关系的一种总体模式;2)随着研究的时间和空间尺度的改变,物种丰富度与生产力的关系会发生一些相应的变化,但空间尺度比时间尺度对物种丰富度与生产力的关系造成的影响更为显著,这可能 相似文献
20.
《农业工程》2014,34(2):85-91
Functional diversity, which is the value, variation and distribution of traits in a community assembly, is an important component of biodiversity. Functional diversity is generally viewed as a key to understand ecosystem and community functioning. There are three components of functional diversity, i.e. functional richness, evenness and divergence. Functional diversity and species diversity can be either positively or negatively correlated, or uncorrelated, depending on the environmental conditions and disturbance intensity. Ecosystem functioning includes ecosystem processes, ecosystem properties and ecosystem stability. The diversity hypothesis and the mass ratio hypothesis are the two major hypotheses of explaining the effect of functional diversity on ecosystem functioning, diversity hypothesis reflects that organisms and their functional traits in a assemblage effect on ecosystem functioning by the complementarity of using resources, and mass ratio hypothesis emphasises the identify of the dominant species in a assemblage. These two hypotheses do not contradict each other and instead they reflect the two different sides of functional diversity and functional composition. The effect of functional diversity on ecosystem functioning also depends on abiotic factors, perturbation, management actions, etc. Function diversity potentially influences ecosystem service and management by effecting on ecosystem functioning. Ecosystem management groups should include functional diversity in their scheme and not just species richness. 相似文献