Habitat type and complexity drive fish assemblages in a tropical seascape

Inshore marine seascapes support a diversity of interconnected habitats and are an important focus for biodiversity conservation. This study examines the importance of habitat attributes to fish assemblages across a mosaic of inshore habitats: coral reefs, rocky reefs, macroalgae beds and sand/rubble beds. Fishes and benthic habitats were surveyed at 34 sites around continental islands of the central Great Barrier Reef using baited remote underwater video stations (BRUVS). Species richness was influenced foremost by habitat type and also by structural complexity within habitat types. The most speciose assemblages occurred in coral and rocky reef habitats with high structural complexity, provided by the presence of coral bommies/overhangs, boulders and rock crevices. Nonetheless, macroalgae and sand/rubble beds also supported unique species, and therefore contributed to the overall richness of fish assemblages in the seascape. Most trophic groups had positive associations with complexity, which was the most important predictor for abundance of piscivorous fishes and mobile planktivores. There was significant differentiation of fish assemblages among habitats, with the notable exception of coral and rocky reefs. Species assemblages overlapped substantially between coral and rocky reefs, which had 60% common species, despite coral cover being lower on rocky reefs. This suggests that, for many species, rocky and coral substrates can provide equivalent habitat structure, emphasizing the importance of complexity in providing habitat refuges, and highlighting the contribution of rocky reefs to habitat provision within tropical seascapes. The results of this study support an emerging recognition of the collective value of habitat mosaics in inshore marine ecosystems.     

Habitat choice and recruitment of tropical fishes on temperate coasts of Japan

Tropical reef corals are expanding on Japanese temperate coasts in response to rising sea surface temperatures, and many tropical fish juveniles have been observed routinely in these coral habitats. The present study explored how offshore tropical fish larvae locate coral habitat on the temperate coasts of Japan. Settlement-stage larvae were sampled between July and October 2009–2011 with light traps anchored on coral-replete and coral-free habitats (rocky habitats) at two-level distance (distance between each habitat type was 6 km and 500 m, respectively). Larval abundance was significantly higher on the coral-dominated habitat than that on the rocky habitat at both short and long distance sites, suggesting that coral habitats attract offshore tropical fish larvae. In underwater visual survey, Chaetodontidae and Pomacentridae juveniles were more abundant in coral habitats than in rocky habitats at both the sites, and a laboratory habitat choice experiment demonstrated that these larvae showed a preference for corals rather than rocks. In contrast, densities of juvenile Mullidae did not differ between the coral and rocky habitats, and the larvae did not show a substrate preference in the habitat choice experiment. These observations suggest that habitat choice at settlement possibly accounts for the differences in settlement patterns of tropical fishes between the two habitats. Taken together, our results showed that most tropical fish larvae colonize their settlement coast at a scale of ~0.5 km, and that they may locate coral habitats after reaching a reef. Moreover, the results suggest that coral habitat expansion on temperate coasts will lead to an increase in coral-associated tropical fishes and will change assemblage structures of fishes on temperate coasts.     

枸杞岛潮下带沙地生境鱼类群落结构和季节变化

为了解岛礁水域沙地生境的鱼类群落结构特征,评估该生境对鱼类资源养护的潜在作用,于2009年采用多网目组合刺网对枸杞岛潮下带沙质区域进行了逐月采样,同步设置岩礁为对照生境.应用α和β多样性指数结合相对重要性指数、相对渔获率、ABC曲线和聚类排序方法对两种生境中的鱼类组成、多样性变化和群落格局与变化进行了全面探讨.全年在沙地和岩礁生境共采集鱼类63种,隶属11目38科56属,2种生境各自出现的鱼类皆为46种.受暖水种频繁出现在沙地生境的影响,潮下带沙质区域鱼类区系比岩礁生境略显丰富,且春夏季的渔获量普遍高于岩礁生境;由于种类组成均匀度较低,沙地生境各季节的α多样性普遍较低,夏季显著低于岩礁生境.日本须鳎是沙地生境的指示种,为早春、夏末和秋冬季沙地底层优势鱼种.5-7月鳀、多数月份鲻和10月份鳗鲇等种类对沙地生境的阶段性利用,使其形成了区别于以趋礁性鱼类为优势类群的岩礁生境的群落格局和季节动态.沙地是多种鱼类幼鱼阶段的庇护所和饵料场,是鲆鲽类的良好栖息地.沙地生境在维持鱼类区系和养护鱼类资源方面具有重要作用.     

Effects of parasites on larval and juvenile stages of the coral reef fish Pomacentrus moluccensis

The ecological role of parasites in the early life-history stages of coral reef fish is far from clear. Parasitism in larval, recently settled and juvenile stages of a coral reef fish damselfish (Pomacentridae) was therefore investigated by quantifying the ontogenetic change in parasite load and comparing the growth rates of parasitized juvenile fish to those of unparasitized ones. Parasite prevalence in two lunar pulses of Pomacentrus moluccensis was 4 and 0% for larval stage fish, 34 and 56% for recently settled fish and 42 and 49% for juveniles. A significant increase in parasite prevalence with age group was found; the most marked increase occurred immediately after larval fish had settled. Standard length did not model prevalence well; as length is a proxy for age, this indicates that the higher prevalence in recently settled and juvenile fish compared with larvae was not a simple result of parasites accumulating with age. In one of three cohorts, there was some evidence that parasitism affected the growth rate of juveniles, as measured by otolith width. The study suggests that settling on the reef exposes young fish to potentially harmful parasites. This supports the idea that the pelagic phase may have the effect of reducing the exposure of young fish to the debilitating effects of parasites.     

Predation creates haloes of bare space among prey on rocky seashores in New South Wales

Field observations on rocky shores in New South Wales suggested a link between pools or wet crevices, predatory whelks foraging from them, and areas around the crevices that were mostly bare of prey (‘haloes’). Whelks were most common in and around crevices but ventured out to feed. Previous work had shown that foraging excursions were cyclical over time. The community of prey also changed with distance from crevices, most types of prey being more abundant further away. A field experiment showed this pattern to be at least partly due to the crevice-bound foraging of the whelks. Experimental removal of whelks over 2 years at several sites caused the gradients in the abundance of prey with distance from crevices to disappear, whilst these patterns persisted and even grew more intense in adjacent control areas. This combination of biotic and physical processes (predation, desiccation, foraging behaviour) is discussed as an important influence on spatial patterning in this and other communities.     

Taxonomic composition and distribution of the echinoderms associations in the littoral ecosystems from the Colombian Pacific

This paper examines published information and gray literature about taxonomy and ecology of echinoderm species of the Colombian Pacific Coast. Unpublished collection data of specimens kept in the Marine Sciences Museum of the University of Valle are also considered. Sixty-six species are found in coastal ecosystems and shallow bottoms of ten geographical, coastal and insular localities of the Pacific coast of Colombia. Main habitats having echinoderms are: rocky cliffs and shores, coral reefs, sand beaches, mud substrates, mangroves, and shallow bottoms of mud, sand, gravel and rocks. Regular Echinoidea and Asteroidea are the most diverse and abundant groups, mainly in subtidal rocky shallow bottoms and coral reefs. Ophiuroidea are abundant below rocky boulders. Irregular Echinoidea are abundant on sand beaches. The relatively high number of species shows that this geographical area presents a high diversity of echinoderms compared with other tropical shallow and littoral zones of the world. Rocky substrates and coral reefs are the ecosystems with the highest numbers of echinoderm species and individuals. A conservation status assessment is difficult because the lack of periodical sampling and few data about deep zones. In general, the species reported in the last 25 years, have not experimented important changes in their populations, although in some specific places, populations may decrease because human activities in coastal areas increase sedimentation rates change some rocky substrates to mud or sand.     

The effect of natural variation in substrate architecture on the survival of juvenile bicolor damselfish

Coral reefs offer settling fish larvae a spatial mosaic of microhabitats that differ not only in structural complexity but also in the abundance and diversity of predators. This paper provides evidence that interactions between predators and prey are causally linked to variation in relevant architectural characteristics of natural substrates. Juvenile bicolor damselfish, Stegastes partitus, experienced greater mortality on Montastrea annularis boulder coral than on piles of Porites porites coral rubble. This pattern was consistent on both back and fore reef habitats. Architectural differences, variable encounter rates with predators, and access to different food sources all contributed to higher mortality. Spatial and structural differences among refuges provided by the two substrates were most important in affecting survival. Porites rubble contained almost three times the number of crevices (39.9 vs. 14.3 crevices m^–2AM²), had a much smaller mean crevice size (15.9 vs. 48.5 cm²), and had a more complex internal structure than Montastrea coral. Survival of juvenile fish living on Montastrea coral was positively correlated with crevice density (r² = 0.41) whereas survival of fish living on Porites rubble was negatively correlated with crevice size (r² = 0.43). These patterns were evident on fore reef habitats only, whereas on back reef habitats no clear patterns emerged. The effect of these natural differences in architecture on mortality rates of juvenile S. partitus was experimentally tested in the field using a combination of natural and artificial substrates. As the number of large shelters was increased I found that the density of potential predators increased but the survival rates of juvenile bicolor damselfish declined. These results highlight the importance of structural architecture among common reef substrates in affecting predator-prey relationships and in determining the survivorship and small-scale distribution patterns of juvenile reef fish.     

Cross-taxon congruence in the rarity of subtidal rocky marine assemblages: No taxonomic shortcut for conservation monitoring

The implementation of protection strategies such as the European Marine Strategy Framework Directive (2008/56/EC) is impeded for subtidal rock bottom habitats because of high sampling costs due to a very wide taxonomic diversity, and a lack of suitable evaluation tools to estimate their conservation importance. In this study, we seek to provide an evaluation procedure by (1) investigating the distribution of rarity among subtidal rock bottom phyla; (2) searching for potential surrogate phyla with a cross-taxon congruence approach based on their rarity; (3) proposing an appropriate multi-phyla indicator to evaluate the importance of subtidal rocky habitats for conservation. We analysed the distribution of 548 species belonging to 8 phyla sampled in 137 assemblages in subtidal rocky areas located around Brittany, Western France. We applied the Index of Relative Rarity, a flexible method which fits rarity weights to species depending on their respective phyla. We found only weak congruence in rarity patterns among phyla, which prevented any attempt to identify surrogate phyla. This finding has important implications for the conservation of subtidal rocky habitats as it means that there is no shortcut to monitor their rarity: working on a subset of phyla would imply a biased evaluation of biodiversity. Consequently, we propose a multi-phyla Index of Relative Rarity combining all phyla which allowed us to successfully describe rarity patterns across all sampled sites.     

Size and Performance of Juvenile Marine Invertebrates: Potential Contrasts Between Intertidal and Subtidal Benthic Habitats

Newly settled or hatched juveniles of marine benthic invertebratesgenerally experience very high mortality. Juvenile mortalitycan profoundly affect adult populations, but little is knownabout how individual variation in juvenile quality affects performance.Several recent studies have demonstrated that differences insize, larval nutrient stores, or larval feeding history canstrongly affect the performance (measured as growth and survivorship)of juveniles. Additional research suggests that the strengthof the effect of juvenile size on performance may be mediatedby variation in environmental stress in the intertidal, a habitatcharacterized by strong fluctuations in abiotic factors. Themajor sources of juvenile snail mortality are likely to differin intertidal and subtidal habitats; abiotic stresses relatedto exposure, such as desiccation, are important in the intertidalbut far less severe in subtidal environments. Previously observedtrends in hatching or settlement size between intertidal andsubtidal species from three gastropod taxa may be due to differingselective regimes acting on initial juvenile size.     

Otolith growth of Springer's demoiselle, Chrysiptera springeri (Pomacentridae, Allen & Lubbock), on a protected and non-protected coral reef

The structural complexity of coral reefs is important for their function as shelter and feeding habitats for coral reef fishes, but physical disturbance by human activities often reduce complexity of the reefs by selectively destroying fragile and more complex coral species. The damselfish Springer's demoiselle Chrysiptera springeri primarily utilize complex coral heads for shelter and are hence vulnerable to human disturbance. In order to evaluate the potential effect of habitat degradation on juvenile fish growth, coral reef cover, fish age at settling and otolith growth, juvenile Springer's demoiselle was investigated on a protected and non‐protected coral reef in Darvel Bay, Borneo. The protected reef had higher coverage of complex branching corals and exhibited a more complex 3‐dimensional structure than the non‐protected reef. Springer's demoiselle settled at the same age on non‐protected and protected reefs. The growth rates of the otoliths from Springer's demoiselle were similar during the pre‐settlement period on the two reefs (manova , P > 0.05), but from age 20 to 48 days (post‐settlement period) the otolith growth rate of juveniles on the non‐protected reef was reduced compared to those from the protected reef (manova , P = 0.017). However, the differences in the otolith size, and by inference, fish size, after 48 days were small. The small effect of habitat degradation on growth is likely related to the fact that the Springer's demoiselles collected on the non‐protected reef were associated with the few remaining complex coral heads. Increased foraging‐predation tradeoffs on the non‐protected reef may decrease food intake and growth of juvenile Springer's demoiselle, but the main effect of habitat degradation on their abundance is likely to be related to lack of suitable shelter, and consequently reduced carrying capacity, on disturbed reefs.     

Habitat associations of juvenile fish at Ningaloo Reef, Western Australia: the importance of coral and algae

Habitat specificity plays a pivotal role in forming community patterns in coral reef fishes, yet considerable uncertainty remains as to the extent of this selectivity, particularly among newly settled recruits. Here we quantified habitat specificity of juvenile coral reef fish at three ecological levels; algal meadows vs. coral reefs, live vs. dead coral and among different coral morphologies. In total, 6979 individuals from 11 families and 56 species were censused along Ningaloo Reef, Western Australia. Juvenile fishes exhibited divergence in habitat use and specialization among species and at all study scales. Despite the close proximity of coral reef and algal meadows (10's of metres) 25 species were unique to coral reef habitats, and seven to algal meadows. Of the seven unique to algal meadows, several species are known to occupy coral reef habitat as adults, suggesting possible ontogenetic shifts in habitat use. Selectivity between live and dead coral was found to be species-specific. In particular, juvenile scarids were found predominantly on the skeletons of dead coral whereas many damsel and butterfly fishes were closely associated with live coral habitat. Among the coral dependent species, coral morphology played a key role in juvenile distribution. Corymbose corals supported a disproportionate number of coral species and individuals relative to their availability, whereas less complex shapes (i.e. massive & encrusting) were rarely used by juvenile fish. Habitat specialisation by juvenile species of ecological and fisheries importance, for a variety of habitat types, argues strongly for the careful conservation and management of multiple habitat types within marine parks, and indicates that the current emphasis on planning conservation using representative habitat areas is warranted. Furthermore, the close association of many juvenile fish with corals susceptible to climate change related disturbances suggests that identifying and protecting reefs resilient to this should be a conservation priority.     

Post-larval French grunts (Haemulon flavolineatum) distinguish between seagrass, mangrove and coral reef water: Implications for recognition of potential nursery habitats

Environmental cues like sound, magnetic field, oceanic currents, water chemistry or habitat structure are believed to play an important role in the orientation of reef fish towards their settlement habitat. Some species of coral reef fish are known to use seagrass beds and mangroves as juvenile habitats. Once oceanic larvae of these fish have located a coral reef from the open ocean, they still have to find embayments or lagoons harbouring these juvenile habitats. The sensory mechanisms that are used for this are still unknown. In the present study, experiments were conducted to investigate if recruits of the French grunt (Haemulon flavolineatum) respond to habitat differences in water type, as mangrove/seagrass water may differ in biotic and abiotic compounds from coral reef water. Our results show that post-larvae of a reef fish that is highly associated with mangroves and seagrass beds during its juvenile life stage, choose significantly more often for water from mangroves and seagrass beds than for water from the coral reef. These results provide a more detailed insight in the mechanisms that play a role in the detection of these juvenile habitats.     

The vegetation of the Farasān Islands,Red Sea,Saudi Arabia

Abstract. Classification of the vegetation of the Farasān Islands using TWINSPAN technique resulted in the recognition of seven community types associated with seven different habitat types: silty runnels, palm orchards, rocky plains, rocky plateau crevices, coastal sand dunes, sand plains, and mangroves. These communities were dominated or co-dominated by 13 perennial species; 87 associate species were recorded in the study area with chamaephytes dominating the life-form spectrum. Canonical Correspondence Analysis (CCA) indicated that organic carbon, soil moisture, silt, electrical conductivity and calcium carbonate were the major edaphic gradients controlling the distribution of the plant communities on the Farasān Islands. Higher species richness was recorded in the plant communities inhabiting the palm orchards, the crevices of the rocky plateau, silty runnels, rocky plains and rocky plateau, while those of the mangrove and sand formations (dunes and plains) showed a lower species richness. Soil texture and organic matter are the main factors promoting species diversity in the more diversified habitats, while high salinity and calcium carbonate are the main factors associated with lower species diversity in the less diversified habitats of the study area.     

Trophic structure of macrobenthic communities on the Portuguese coast. A review of lagoonal,estuarine and rocky littoral habitats

This work is based on a compilation and treatment of data obtained on several studies regarding the macrobenthos trophic structure, carried out in different habitats of the Portuguese coast: a lagoon, rocky subtidal shores and estuarine eelgrass beds. Macrobenthic organisms were assigned to four distinct trophic groups (filter feeders, detritivores, herbivores and carnivores). Detritivores were the dominant trophic group in soft-bottom communities. Filter feeders dominated in subtidal rocky shores while eelgrass communities were equally represented by detritivores and herbivores. Current intensity and sediment deposition are discussed as factors affecting the observed distribution. Nevertheless, different sampling methods used in these studies and the lack of information on feeding habits of some species can also influence the results obtained.     

Validation of daily otolith increments in larval and juvenile Chinese sucker, <Emphasis Type="Italic">Myxocyprinus asiaticus</Emphasis>

Otolith development was observed and the formation of daily growth increments in otoliths of Chinese sucker, Myxocyprinus asiaticus, was validated by monitoring known-age larvae and juveniles in the laboratory from 2003 to 2005. Otolith shape changed with larval and juvenile development, and there was an exponential relationship until a body length of 16 mm or so, and a linear relationship after a body length of 16 mm between otolith size and fish size. The first increment was identified in larvae 1 day after hatching. The regressed equations between daily age (D) and increment number in otoliths (N) were N = −0.64 + 0.96D in lapillus, and N = −0.31 + 0.98D in sagitta. The slopes were not significantly different than 1.0. This demonstrated that otolith increments in this species were formed daily and can be used for daily age determination.     

Observations on the sexual system and the natural history of the semi-terrestrial shrimp Merguia rhizophorae (Rathbun, 1900)

Abstract. The sexual system of the semi-terrestrial shrimp Merguia rhizophorae is described, along with natural history observations on this unusual caridean. Individuals of M. rhizophorae in the Bocas del Toro Archipelago, Panama, were found occupying fossilized coral terraces in the upper and mid-intertidal zones, inhabiting caves and crevices, in and out of water. These fossilized coral terraces represent a new habitat for this species, which was previously reported only from mangrove swamps. Males, which made up 65% of the studied population, were smaller than females on average. No small juvenile females were observed, but transitional individuals having the characteristics of both males (gonopores) and females (ovaries) were observed in the population. These data suggest that individuals of M. rhizophorae are protandric hermaphrodites. Logistic regression indicated that the carapace length at which 50% of the individuals change sex is 4.89 mm. The abundance of shrimps at the study site was low. Shrimps were usually solitary, but occasionally observed in groups of ≤5 individuals. Shrimps were commonly observed walking while out of water, and in some cases, emerged shrimps jumped vigorously, presumably to avoid capture by the researcher or by predatory crabs. Additional studies on the reproductive biology and the behavioral ecology of members of this genus and of members of the closely related families Barbouridae and Lysmatidae will aid in understanding the evolutionary origin and the adaptive value of gender expression patterns in shrimps.     

Fatty acid profiles of Mytilus galloprovincialis (Lmk) mussel of subtidal and rocky shore origin

Fatty acid profiles of seeds of the mussel Mytilus galloprovincialis originating from two habitats (rocky shore and subtidal) were compared after transfer to the same habitat (subtidal). The objective was to study the initial levels of different fatty acids of metabolic importance and, furthermore, the variability of these fatty acids over the experimental period. The results show that of all fatty acids identified in both seed groups, the polyunsaturated fatty acids (PUFA) is the group with highest percentage. Within this group, the C20:5n-3 and C22:6n-3 fatty acids show the highest levels. Additionally, the mussels of subtidal origin presented higher initial levels than the rocky shore mussels with regard to fatty acids characterised by energetic-type functions, such as the C14:0, C16:0, and the C20:5n-3 fatty acids, among others. Fatty acids characterised by structural-type functions, e.g. C18:0, C22:6n-3 and non-methylene interrupted dienoic (NMID) with 20 and 22 carbons in rocky shore mussels presented higher levels than those of the subtidal mussels. However, it has not been ruled out that aside from influences relating to the functional aspects of the different fatty acids, the initial differences were also associated with the quantitative and qualitative differences of the available food in both habitats. Nevertheless, 22 days into the experiment (in the majority of cases) the initial differences disappear in the different fatty acids with metabolic importance. On the basis of these results, the influence that mussel origin could exercise on the variability of the fatty acid profiles of recognised metabolic importance is discussed.     

Patterns of scleractinian coral recruitment at Lord Howe Island,an isolated subtropical reef off eastern Australia

Changing oceanic conditions, particularly ocean warming and altered currents, can affect the reproductive success of corals. Improving the knowledge of coral reproductive processes at the marginal range limits of coral reefs is important for understanding the ecology of subtropical coral communities and the potential for coral species to expand their ranges in higher latitudes in the future. The extent of live coral cover around subtropical Lord Howe Island (LHI; 31°33′S, 159°05′E) approximately 600 km off the east coast of Australia, has been relatively stable over the last several decades; however, shifts in dominant species in the adult coral community have been reported. To examine the potential influences of recent altered currents and shifts in dominant scleractinian taxa within this community, this study examined spatial and seasonal variation of coral larval settlement at different habitats within the LHI reef lagoon. The study also assessed whether the assemblage of scleractinian corals settling at LHI has changed between 1990–1991 and 2011–2012. Mean densities of coral settlement in 2011–2012 (230 spat m^?2 yr^?1) were consistent with those reported in 1990–1991 and in other regions. However, changes in taxonomic composition were apparent with increases in the proportion of Acroporidae spat at some sites. Settlement of all taxa was highest over summer months, whereas during winter only one coral spat (Pocilloporidae) was detected. Coral settlement was highest and most taxonomically diverse at sites closest to the reef crest, where mortality of settled spat was also greatest. Rates of settlement were high compared with juvenile densities; hence, post-settlement mortality is also likely to be high. Post-settlement processes, influenced by local environmental conditions, are likely to be very important in structuring the adult coral communities within the LHI reef lagoon.     

Habitat associations of juvenile versus adult butterflyfishes

Many coral reef fishes exhibit distinct ontogenetic shifts in habitat use while some species settle directly in adult habitats, but there is not any general explanation to account for these differences in settlement strategies among coral reef fishes. This study compared distribution patterns and habitat associations of juvenile (young of the year) butterflyfishes to those of adult conspecifics. Three species, Chaetodon auriga, Chaetodon melannotus, and Chaetodon vagabundus, all of which have limited reliance on coral for food, exhibited marked differences in habitat association of juvenile versus adult individuals. Juveniles of these species were consistently found in shallow-water habitats, whereas adult conspecifics were widely distributed throughout a range of habitats. Juveniles of seven other species (Chaetodon aureofasciatus, Chaetodon baronessa, Chaetodon citrinellus, Chaetodon lunulatus, Chaetodon plebeius, Chaetodon rainfordi, and Chaetodon trifascialis), all of which feed predominantly on live corals, settled directly into habitat occupied by adult conspecifics. Butterflyfishes with strong reliance on corals appear to be constrained to settle in habitats that provide access to essential prey resources, precluding their use of distinct juvenile habitats. More generalist butterflyfishes, however, appear to utilize distinct juvenile habitats and exhibit marked differences in the distribution of juveniles versus adults.     

The influence of shelter availability on recruitment and early juvenile survivorship of Lythrypnus dalli Gilbert (Pisces: Gobiidae)

The bluebanded goby, Lythrypnus dalli Gilbert, is a common inhabitant of rocky subtidal reefs along the coast of southern California. Experiments utilizing artificial habitats indicate that recruitment and early juvenile survivorship are limited by the presence of adult conspecifics and predators. However, the level of effect is strongly influenced by shelter availability. Both adult and predator effects on limiting juvenile density are significantly reduced as the availability of shelters is increased. Susceptibility to predation is greatest among smaller size classes of fish and is likely to result from displacement from shelters by larger fish. Existing population structures probably reflect the availability of adequate shelter sizes and relative competitive abilities among fish.