Analysis of demersal fish assemblages off the Southern Tyrrhenian Sea (central Mediterranean)

Monitoring and management of Mediterranean trawling requires a multispecies and ecosystem-based approach. Over the last 20 years studies on diversity and distribution of fish communities have been carried out by ecologists and applied to different ecosystems. Until now, very little information has been available on the Southern Tyrrhenian Sea. The aim of this work is: to analyse the structure of fish demersal assemblages, on a temporal (10 years) and spatial scale using a multivariate approach; to analyse, across space and time, the pattern of biodiversity by means of univariate indices; to identify areas supporting high values of diversity and evenness by a Geographical Information System (GIS) method. The analysis of 249 hauls from ten trawl surveys carried out between depths of 30 and 750 m in the South Tyrrhenian Sea yielded a total of 164 fish species. Multidimensional scaling ordination showed four groups distributed according to the depth gradient: a coastal group (0–100 m depth), a group in the lower part of the continental shelf (101–200 m), an epibathyal group (201–500 m) and the last one derived from hauls made in the middleslope (501–800 m). There were no differences, between years, protected and unprotected areas and geographical sectors. The whole study area was characterised by diversity values which were quite heterogeneous. The persistence index was generally low. Results could be useful from an ecological point of view and for the management of fishery activities.     

Species assemblages of pelagic fish embryos in the southern North Sea between 1984 and 2000

The occurrence and abundance of the pelagic eggs of southern North Sea spring-spawning fish were analysed between 1984 and 2000. Species number varied between six (1986) and 14 (1999) and was positively correlated with sea surface temperature. With one exception, dab eggs were always the most abundant and usually highly dominant. Ranking of species depended on temperature, but no significant differences in ranking between years was discernible. Although with the increase in temperature in the 1990s a change in species assemblage was evident [species belonging to the boreal-Mediterranean (Lusitanian) group became more apparent in the species assemblage] this did not lead to an increased species diversity (Shannon Index) or a change in other community parameters. It appears that the recent developments regarding spawning stock biomass of commercial North Sea fish is reflected in the declining egg abundance of the respective commercial and larger species (i.e. cod, flounder, plaice) and an increase in abundance of the eggs of small species (i.e. long rough dab, rockling) over the years. Received in revised form: 5 November 2001 Electronic Publication     

Seasonal and interannual variation of subtidal fish assemblages in Wakasa Bay with reference to the warming trend in the Sea of Japan

A bi-monthly underwater visual census was conducted in the subtidal habitat of Nagahama, Wakasa Bay, Sea of Japan, over 5 years from January 2002 to December 2006. A total of 83 fish species and 63,328 individuals were recorded over 120 1-h visual censuses composed of three 2 × 200 m transects. The number of both total individuals (abundance) and species (richness) were strongly correlated with the bottom-water temperature. Species richness was greatest in summer (July–September), with 10–20 species per 400 m², when the sea-bottom temperature was highest (24–28°C), and lowest in winter (January–March), with 1–8 species per 400 m², when the temperature was lowest (10–12°C). Five species, i.e., rockfish, Sebastes inermis, wrasse, Pseudolabrus sieboldi, two species of goby, Acentrogobius pflaumii and Tridentiger trigonocephalus, and pygmy filefish, Rudarius ercodes, were frequently observed and present in more than 200 of the total of 360 total transects. While the presence of most fish species was dependent on water temperature, some species were independent of water temperature, including anchovy, Engraulis japonicus, S. inermis, wasp fish, Hypodytes rubripinnis, A. pflaumii and pufferfish, Takifugu poecilonotus. Jack mackerel, Trachurus japonicus, was the most abundant fish, being most typically seen from spring through autumn, with a total of 21,850 individuals observed over the whole census period. Some species showed strong annual fluctuations in abundance. The interannual stability in fish abundance and species richness was probably because the fish assemblage was composed of a sufficiently large number of species, but with the number of each species fluctuating over time. A comparison of the present survey to one in 1970–72 revealed that over the last 30 years southern fish species have significantly increased whereas those indigenous to northern waters have decreased.

Year-to-year variation in larval fish assemblages of the Southern North Sea

In order to test the temporal stability within and the reproducibility of larval fish assemblages between years, the larval fish assemblage at Helgoland Roads, North Sea (NE Atlantic) was quantitatively sampled almost daily from January 2003 to December 2005. The survey resulted in a total of 462 samples containing 50,632 larval fish of at least 42 taxa. In winter the larval fish assemblage was mainly dominated by larvae emerging from demersal eggs. This changed gradually to larvae hatching from pelagic eggs. Larvae from pelagic eggs dominated the ichthyoplankton assemblage in summer. A remarkably stable seasonality in terms of dominance patterns with recurring, season-specific fish assemblages was observed over the 3 years, despite substantial variation in environmental conditions such as a temperature difference of almost 20°C between summer and winter. The lesser sandeel (Ammodytes marinus), was the only species which showed significant fluctuations in abundance between the years. After removal of this species from the analysis, the dominance patterns of the remaining fish species were almost identical between years.     

Annual and non-annual fish assemblages respond differently to environmental and spatiotemporal variations of temporary wetlands from southern Brazil

• The fish community of temporary wetlands is highly dynamic due to the marked seasonal changes in hydrological and limnological conditions. In this study, we evaluated spatiotemporal variation in the fish community and the influence of environmental factors on this variation in temporary wetlands in southern Brazil.
• Two different life cycles—annual and non-annual fishes—were recorded among species. Variation in the fish community appeared to be associated with differences in the life history strategy of species. While species of annual fish were present throughout the hydroperiod, gradually decreasing in density over time, non-annual fish species had an opposite pattern, with higher densities in the final phase of the hydrological cycle.
• Variations in the composition and abundance of fish community in temporary wetlands were related to habitat and landscape attributes (area, number of microhabitats and isolation between temporary wetlands) and climate indicators of water availability (air temperature, average rainfall, and water level of the São Gonçalo channel), but not to water conditions (dissolved oxygen, pH, conductivity and water temperature).
• We concluded that the ichthyofauna of temporary wetlands are composed both of rare species, highly specialised for life within these ephemeral environments, and widespread generalist species that reach the wetlands opportunistically for short periods. Habitat and landscape attributes and changes in climate and hydrological variables over the hydroperiod are the factors that had the greatest influence on spatiotemporal variation of the fish community.
• Maintaining physical characteristics and the hydrological cycle of temporary wetlands is critical for the conservation of fish species inhabiting these vulnerable environments in southern Brazil. Habitat and landscape attributes and climate and hydrology fluctuations affect the annual and non-annual fishes inhabiting temporary wetlands differently.

     

Fungal assemblages associated with sponges of the southern coast of Sakhalin Island

This paper examines the biodiversity of fungi associated with six species of sponges from the southern coast of Sakhalin Island. The species richness of fungal assemblages is represented by 78 species, mainly Anamorphic fungi. The diversity and numbers of fungi depend on the species of sponge, which is due to the rigidity of the skeleton and the morphological characteristics of the sponges.     

Distribution of recent foraminiferal assemblages near the Ombrone River mouth (Northern Tyrrhenian Sea, Italy)

Benthic foraminiferal assemblages in 127 samples, collected at water depth, ranging between 15 and 184 m on the Southern Tuscany continental shelf off the Ombrone River were analysed. Statistical analyses (Cluster and Principal Component Analysis) performed on the 48 most abundant species (>5%) and sedimentological data led to the identification of three clusters related to the size of grain sediment (sand, silt or clay). Q-mode cluster analysis singled out six groups, corresponding to six distinct foraminiferal assemblages: a typical infralittoral assemblage (15-39 m) on sandy silt, clayey silt or silty clay, dominated by Ammonia and Elphidium species, with Eggerelloides scabrus, Rectuvigerina phlegeri and Valvulineria bradyana; a second assemblage (24-78.5 m) associated with vegetated environments or sandy bottoms (Elphidium crispum, Rosalina bradyi, Asterigerinata mamilla, Neoconorbina terquemi, and Tretomphalus concinnus); a third assemblage recognised between 30 and 90 m water depth and characterised by the dominance of the opportunistic species V. bradyana (related to silty bottoms), with Bulimina marginata, R. phlegeri, Ammonia inflata and Ammonia beccarii as other common taxa; an upper circalittoral assemblage (70-100 m) on silty clays, containing B. marginata, Cassidulina carinata and V. bradyana; a lower circalittoral assemblage (95-177 m) on clayey bottoms, with B. marginata, Textularia bocki and Uvigerina mediterranea; and finally, a second lower circalittoral assemblage (104-184 m) on clayey sediments, dominated by two Uvigerina species (U. mediterranea and Uvigerina peregrina), with Sphaeroidina bulloides and B. marginata. The typical V. bradyana assemblage, characterised by relatively low diversity and high dominance, marks the most eutrophicated area running parallel to the coast. The spatial distribution of assemblages is closely associated with sea-bottom sedimentary environments and bathymetry but it is also probably influenced by the outflow of the Ombrone River. The composition, structure and distribution of V. bradyana assemblage suggest an environmental model, useful for paleogeographic reconstruction in areas characterised by a river mouth and a closed morphological setting typical of a nutrient-trap.     

Diel variation in fish assemblages in tidal creeks in southern Brazil.

Tidal creeks are strongly influenced by tides and are therefore exposed to large differences in salinity and depth daily. Here we compare fish assemblages in tidal creeks between day and night in two tidal creeks in southern Brazil. Monthly day and night, simultaneous collections were carried out in both creeks using fyke nets. Clupeiformes tended to be caught more during the day. Cathorops spixii, Genidens genidens and Rypticus randalli tended to be caught at night. Sciaenidae also tended to be caught more during the night. In general, pelagic species were diurnal, while deep water species were nocturnal. These trends are probably due to a variety of causes, such as phylogeny, predation and net avoidance.     

Spatiotemporal variability of demersal fish larvae assemblages in the southern region of the California Current

An analysis was conducted of the community structure variability of demersal fish larvae and its relationship with environmental forcing on the west coast of the Baja California Peninsula (25–31°N). The information comes from two data sets of oceanographic cruises in 1997–2000 and 2006–2010. From a total of 190 identified taxa, a high number of species (71) was shared throughout the peninsula. The spatiotemporal contrast in the community structure suggests the separation of two groups (northern and southern) whose boundary is located around Punta Eugenia. The northern group showed an alternate dominance of species with a subarctic-transitional faunistic affinity during the winter and spring and species of a subtropical affinity during summer–autumn. In contrast, the dominant taxa in the southern group have a tropical–subtropical affinity throughout the year, although some taxa of subarctic-transitional affinity also occur during winter–spring. In the spatiotemporal scale, these results suggest that the major cause that modulates the extension and structure of the assemblages is the seasonal oceanic dynamics. Moreover, the intensity of warming or cooling events (El Niño and La Niña) influences the structure of the community on an interannual scale by displacing the zonal boundaries of the groups’ distribution.     

Analysis of the blennioid assemblages associated with different rocky shore habitats in the Ligurian Sea

The differences among blennioid assemblages (families Blenniidae and Tripterygiidae) on different habitats were assessed at two localities of the Ligurian Sea, namely Arenzano and Riva Trigoso. The assemblage composition and species relative density were evaluated visually on four different habitats of diverse wave exposure and substratum orientation (macro‐habitat characteristics): two vertical intertidal and subtidal habitats (exposed and sheltered rockwalls) and two horizontal subtidal habitats (semi‐exposed flat rock and boulders and pebbles). Each habitat was also characterized in relation to micro‐habitat features, such as substratum complexity, heterogeneity and amount of algae cover. Patterns of differences among habitats in assemblage variables and fish density, and the influences of macro‐ and micro‐habitat features on these patterns were studied at small (within localities) and large (across localities) spatial scales. Higher values of species richness (S), diversity and evenness (J) were generally associated with vertical habitats, as a result of a positive correlation with substratum orientation. The presence of an intertidal zone in the rockwall habitats may partially explain the observed differences in assemblage variables between vertical and horizontal habitats. The strength of relationships between S, and J and the other investigated habitat variables (exposure, complexity, heterogeneity and algae cover) varied greatly depending on spatial scale. All these relationships were positive, except for complexity. Significant variation in the assemblage total density among habitats was recorded only at Arenzano, where a larger number of fishes were counted on rockwalls rather than on the horizontal habitats. The positive effect of orientation on fish total density was strictly dependent on spatial scale. Fish total density showed a negative correlation with complexity and a positive correlation with heterogeneity, both relationships being unaffected by spatial scale. The unexpected relationship with complexity was probably due to the fact that, in the most complex habitat (i.e. boulder and pebbles), the potential positive effect of high complexity on fish density might be overcome by the negative influence of other environmental features, such as horizontal orientation and low wave exposure. Complexity and heterogeneity thus seemed good predictors of fish total density, but their role needs to be carefully interpreted. The most marked differences in species composition and relative density were found between rockwalls and the other habitats, mostly due to an unbalanced distribution of some stenoecious species. Variations in species relative density were related to different combinations of both macro‐ and micro‐habitat features, and these relationships usually changed depending on spatial scale.     

Annual dynamics of bacterioplankton assemblages in the Gulf of Trieste (Northern Adriatic Sea)

Bacterioplankton community diversity was investigated monthly in coastal waters of the Gulf of Trieste (NE Adriatic Sea) throughout 2003. Superficial bacterial assemblages of two differently freshwater influenced stations were studied using PCR-DGGE fingerprinting techniques. Bacterial genetic diversity of the sampled area, as estimates of the number of DGGE bands was high (36-64) compared to that reported in other studies employing this fingerprint technique. The similarity index (Sorensen Index) between assemblages showed a defined operational taxonomic units (OTUs) succession pattern in the more typically marine station with stable winter communities and quickly changing summer ones. On the contrary in the station affected by riverine inputs no clear pattern was detected. In both sites, according to cluster analyses performed on the DGGE banding pattern, three seasonal assemblages were identified: winter-spring, summer and fall. Sequence analysis of fifty-six among the brightest gel bands led to the observation of bacteria affiliated to Gram positive, Cyanobacteria, Cytophaga-Flavobacteria-Bacteroides (CFB) lineages and the alpha-, gamma- and delta- subdivisions of the Proteobacteria. Gamma-Proteobacteria constituted the main fraction (60%) of sequences in the more typically marine station, whereas the river-influenced station was characterised by more heterogeneous assemblages (39% alpha-Proteobacteria, 32% Flavobacteria).     

Seasonal variation in reef fish assemblages in the environmentally extreme southern Persian/Arabian Gulf

The southern Persian/Arabian Gulf experiences extreme seasonal temperature variation (> 20 °C) making it among the most hostile reef environments on Earth. Previous anecdotal evidence has suggested that seasonal temperature changes may influence regional reef fish assemblages, but to date research has been limited. To examine the influence of temperature on reef fish abundance and composition, we performed visual surveys in summer and in winter over three years at three reefs in the southern Gulf (Dhabiya, Saadiyat and Ras Ghanada). Overall abundance of fishes was 40% higher in summer than in winter, and multivariate analyses showed strong and significant differences in overall seasonal community structure, consistent at all sites and across all years. Seasonal differences were largely driven by nine of the 30 observed species, which together accounted for 70% of the divergence in community structure between summer and winter. Of these nine species, Lutjanus ehrenbergii, Lutjanus fulviflamma, Plectorhinchus sordidus and Abudefduf vaigiensis were significantly more abundant in summer, Parupeneus margaritatus and Acanthopagrus bifasciatus, were significantly more common on reefs in winter. We discuss these changes in terms of seasonal physiological and ecological constraints, and explore the implications of these changes on the functional ecology of reef fishes in this thermally variable and extreme environment.

     

Diversity, structure and function of fish assemblages associated with Posidonia oceanica beds in an area of the eastern Mediterranean Sea and the role of non-indigenous species

Temporal and spatial variation in density, biomass and body size of littoral fish species associated with nearshore Posidonia oceanica meadows was studied over an annual cycle in an area of the eastern Mediterranean Sea. A total of 109,350 littoral fishes were collected, belonging to 34 families and 88 species. Density of fishes peaked during the summer due to high numbers of juveniles. Season was a significant factor determining density, although number of species and biomass did not show any obvious seasonal pattern. Throughout the study, schooling planktivorous fish species such as the picarel Spicara smaris, the bogue Boops boops and the damselfish Chromis chromis were dominant, both in terms of density (80%) and biomass (70%). Temporal variation in density and body size of fishes was used to assess the seasonal and ontogenetic habitat use of each species, with their affinity to seagrass assessed by comparing their respective distribution on sand. Four functional guilds were created (juvenile migrants, seagrass residents, seasonal migrants and occasional visitors) to describe the habitat use of P. oceanica meadows by each species. Several species associated with P. oceanica meadows used this habitat mainly as juveniles during summer, although many others were present concurrently as adults and as juveniles. Among the species encountered, 11 were non-indigenous of Indo-Pacific origin, of which three used seagrasses mainly as juveniles and four as residents. The non-indigenous silverstripe blaasop Lagocephalus sceleratus ranked among the 10 most dominant species in terms of biomass (2%) and was classified as a seagrass resident.     

Demersal fish assemblages and spatial diversity patterns in the Arctic-Atlantic transition zone in the Barents Sea

Direct and indirect effects of global warming are expected to be pronounced and fast in the Arctic, impacting terrestrial, freshwater and marine ecosystems. The Barents Sea is a high latitude shelf Sea and a boundary area between arctic and boreal faunas. These faunas are likely to respond differently to changes in climate. In addition, the Barents Sea is highly impacted by fisheries and other human activities. This strong human presence places great demands on scientific investigation and advisory capacity. In order to identify basic community structures against which future climate related or other human induced changes could be evaluated, we analyzed species composition and diversity of demersal fish in the Barents Sea. We found six main assemblages that were separated along depth and temperature gradients. There are indications that climate driven changes have already taken place, since boreal species were found in large parts of the Barents Sea shelf, including also the northern Arctic area. When modelling diversity as a function of depth and temperature, we found that two of the assemblages in the eastern Barents Sea showed lower diversity than expected from their depth and temperature. This is probably caused by low habitat complexity and the distance to the pool of boreal species in the western Barents Sea. In contrast coastal assemblages in south western Barents Sea and along Novaya Zemlya archipelago in the Eastern Barents Sea can be described as diversity "hotspots"; the South-western area had high density of species, abundance and biomass, and here some species have their northern distribution limit, whereas the Novaya Zemlya area has unique fauna of Arctic, coastal demersal fish. (see Information S1 for abstract in Russian).     

Meiofauna as food source for small-sized demersal fish in the southern North Sea

Meiofauna play an essential role in the diet of small and juvenile fish. However, it is less well documented which meiofaunal prey groups in the sediment are eaten by fish. Trophic relationships between five demersal fish species (solenette, goby, scaldfish, dab <20 cm and plaice <20 cm) and meiofaunal prey were investigated by means of comparing sediment samples and fish stomach contents collected seasonally between January 2009 and January 2010 in the German Bight. In all seasons, meiofauna in the sediment was numerically dominated by nematodes, whereas harpacticoids dominated in terms of occurrence and biomass. Between autumn and spring, the harpacticoid community was characterized by Pseudobradya minor and Halectinosoma canaliculatum, and in summer by Longipedia coronata. Meiofaunal prey dominated the diets of solenette and gobies in all seasons, occurred only seasonally in the diet of scaldfish and dab, and was completely absent in the diet of plaice. For all fish species (excluding plaice) and in each season, harpacticoids were the most important meiofauna prey group in terms of occurrence, abundance and biomass. High values of Ivlev’s index of selectivity for Pseudobradya spp. in winter and Longipedia spp. in summer provided evidence that predation on harpacticoids was species-selective, even though both harpacticoids co-occurred in high densities in the sediments. Most surficial feeding strategies of the studied fish species and emergent behaviours of Pseudobradya spp. and Longipedia spp. might have caused this prey selection. With increasing fish sizes, harpacticoid prey densities decreased in the fish stomachs, indicating a diet change towards larger benthic prey during the ontogeny of all fish species investigated.     

An index of biotic integrity based on fish assemblages for subtropical streams in southern Brazil

Several methods for calculating indices of biological integrity (IBIs) have been developed for different ecogeographic regions of the world. All of them calculate IBI scores by comparing against reference sites or historical data on fish assemblage composition. Because of intensive agriculture and urbanization in our study area, we located no reference sites, and historical information about fish assemblage composition did not exist. Instead, we developed hypothetical reference scores based on seasonal electrofishing surveys at six study sites in adjacent but geomorphologically different watersheds. Our IBI included 10 metrics that varied with degree of degradation. We found that Shannon–Wiener indices varied significantly between seasons, indicating significant changes in species composition. Therefore, we calculated seasonal IBI scores also, but these did not significantly differ from each streams general IBI score, which was calculated on the basis of four samples per site. General stream IBI scores reflected differing levels of anthropogenic disturbance.     

The influence of coral reef benthic condition on associated fish assemblages

Accumulative disturbances can erode a coral reef's resilience, often leading to replacement of scleractinian corals by macroalgae or other non-coral organisms. These degraded reef systems have been mostly described based on changes in the composition of the reef benthos, and there is little understanding of how such changes are influenced by, and in turn influence, other components of the reef ecosystem. This study investigated the spatial variation in benthic communities on fringing reefs around the inner Seychelles islands. Specifically, relationships between benthic composition and the underlying substrata, as well as the associated fish assemblages were assessed. High variability in benthic composition was found among reefs, with a gradient from high coral cover (up to 58%) and high structural complexity to high macroalgae cover (up to 95%) and low structural complexity at the extremes. This gradient was associated with declining species richness of fishes, reduced diversity of fish functional groups, and lower abundance of corallivorous fishes. There were no reciprocal increases in herbivorous fish abundances, and relationships with other fish functional groups and total fish abundance were weak. Reefs grouping at the extremes of complex coral habitats or low-complexity macroalgal habitats displayed markedly different fish communities, with only two species of benthic invertebrate feeding fishes in greater abundance in the macroalgal habitat. These results have negative implications for the continuation of many coral reef ecosystem processes and services if more reefs shift to extreme degraded conditions dominated by macroalgae.     

Diet of young-of-the-year bluefin tuna, Thunnus thynnus (Linnaeus, 1758), in the southern Tyrrhenian (Mediterranean) Sea

The diet of juvenile bluefin tuna (Thunnus thynnus) caught 2 to 8 miles off NE Sicily was investigated in order to improve knowledge of the species’ early life history. From 1998 to 2000, 107 specimens ranging from 63 to 495 mm (total length) were fished between July and November. Fishes were caught by trolling line or purse seine in a Fish Aggregating Devices (FADs) area 2 to 8 miles offshore and as by‐catch of the purse‐seine sardine fishery 2 to 4 miles offshore. Most frequently found items in the T. thynnus stomachs were fishes (84.5%), crustaceans (54.6%) and cephalopods (50.5%). The largest contribution in weight was provided by cephalopods (47.3%) and fishes (46.5%), while the most abundant items were fishes (51%), cephalopods (27.2%) and crustaceans (21.1%). These results suggest that young‐of‐the‐year tuna have an essentially piscivorous diet, although invertebrate prey provide a substantial contribution to the food array. Prey show little relationship with FADs, although one prey species (blue runner, Caranx crysos) is associated with FADs in the Mediterranean.     

Molluscan assemblages on coral reefs and associated hard substrata in the northern Red Sea

Information on spatial variability and distribution patterns of organisms in coral reef environments is necessary to evaluate the increasing anthropogenic disturbance of marine environments (Richmond 1993; Wilkinson 1993; Dayton 1994). Therefore different types of subtidal, reef-associated hard substrata (reef flats, reef slopes, coral carpets, coral patches, rock grounds), each with different coral associations, were investigated to determine the distribution pattern of molluscs and their life habits (feeding strategies and substrate relations). The molluscs were strongly dominated by taxa with distinct relations to corals, and five assemblages were differentiated. The Dendropoma maxima assemblage on reef flats is a discrete entity, strongly dominated by this encrusting and suspension-feeding gastropod. All other assemblages are arranged along a substrate gradient of changing coral associations and potential molluscan habitats. The Coralliophila neritoidea-Barbatia foliata assemblage depends on the presence of Porites and shows a dominance of gastropods feeding on corals and of bivalves associated with living corals. The Chamoidea-Cerithium spp. assemblage on rock grounds is strongly dominated by encrusting bivalves. The Drupella cornus-Pteriidae assemblage occurs on Millepora-Acropora reef slopes and is strongly dominated by bivalves associated with living corals. The Barbatia setigera-Ctenoides annulata assemblage includes a broad variety of taxa, molluscan life habits and bottom types, but occurs mainly on faviid carpets and is transitional among the other three assemblages. A predicted degradation of coral coverage to rock bottoms due to increasing eutrophication and physical damage in the study area (Riegl and Piller 2000) will result in a loss of coral-associated molluscs in favor of bivalve crevice dwellers in dead coral heads and of encrusters on dead hard substrata.