Variation in Lp(a) levels and apo(a) isoform frequencies in five baboon subspecies

Elevated levels of lipoprotein (a) [Lp(a)] are positively correlated with risk of cardiovascular disease and are thought to be a function of allelic variation in apo(a), the unique protein component of Lp(a). In this article we examine subspecies variation in Lp(a) levels and apo(a) isoforms in the baboon. Breeding populations of the five subspecies (Papio hamadryas hamadryas, P.h. cynocephalus, P.h. ursinus, P.h. papio, and P.h. anubis) of common long-tailed baboons are maintained at the Southwest Foundation for Biomedical Research. Serum samples were obtained from at least 20 unrelated animals of each subspecies. Twelve different size isoforms (including the null) of apo(a) were identified across the five subspecies. These isoforms act as alleles; a maximum likelihood method was used to obtain the allele frequencies. Significant differences in apo(a) isoform frequencies were found between subspecies (chi 2(44) = 163.10, p less than 0.0001). Quantitative levels of Lp(a) also differed among subspecies. We evaluated the correlation between genetic distances calculated using the quantitative Lp(a) levels and the apo(a) isoform data. Observed genetic relationships among the subspecies are consistent with the present-day geographic distribution and information from other marker protein systems. The findings indicate that the marker apo(a) may have great utility in both evolutionary and biomedical studies.     

A revision of the brassoline genus Opsiphanes (Lepidoptera: Rhopalocera)

The brassoline genus Opsiphanes is revised: 18 new subspecies are described, 12 new synonymies established, the status of nine species and subspecies is revised and 30 lectotypes are designated. Seventy-two (of 92) primary types are figured, many for the first time. Along the Andes, there is a fairly close agreement between the distribution of some of the subspecies of Opsiphanes with the recently recognized endemic centres. East of the Andes, there is no close agreement between subspecies and endemic centres; each subspecies has, in general, a distribution across several centres. A similar distribution has been noted previously in the brassoline genera Catoblepia and Selenophanes. Some subspecies, however, indicate previously unrecognized centres or subcentres in Colombia and Ecuador.     

A review of subspecies recognition in polydesmidan millipedes (Diplopoda) with a revision of the subspecies of Euryuridae (Xystodesmoidea)

Jorgensen, M. C., Sierwald, P. & Mason‐Gamer, R. J. (2012). A review of subspecies recognition in polydesmidan millipedes (Diplopoda) with a revision of the subspecies of Euryuridae (Xystodesmoidea). —Zoologica Scripta, 42, 317–326. Taxonomic subspecies recognition is controversial due to the lack of an objective definition of the concept and inconsistent use of the category. The practice of designating subspecies is assessed here through a thorough review of 244 subspecies designations of polydesmidan millipedes over a 50‐year period. The survey focuses on the justification given for subspecies recognition, the amount of data available for the designation, the handling of nominate subspecies and the criteria used for diagnosis. We address several problematic issues and provide suggestions to enhance future work. Three examples of subdivided species from the Euryuridae (Polydesmida) are presented in detail with some taxonomic revision. Euryurus leachii leachii and E. leachii fraternus are synonymized, and the subspecific epithets are discarded. Auturus erythropygos erythropygos and A. erythropygos becki are returned to full species rank.     

A CLADISTIC ANALYSIS OF CIRCAEA (ONAGRACEAE)

Abstract— Circaea (Onagraceae), a genus of seven species from the northern hemisphere, forms a monophylctic group defined by the following synapomorphies: two stamens (opposite the sepals), fruits indehiscent capsules, hooked hairs on the fruits, and perianth parts reduced to two. A cladistic analysis of the genus was performed using 22 characters from morphology, anatomy and palynology. The seven species and seven additional subspecies were considered the terminal taxa. Polarity of the characters is based on the outgroup comparison method. Eighteen equally parsimonious cladograms were produced, each with 32 steps and a consistency index of 0.75. A successive weighting procedure was applied, resulting in six cladograms with a consistency index of 0.95. All 24 cladograms share the following seven monophylctic groups: (1) all species except C. cordala and C. glabrescens (stipules deciduous); (2) the group of C. mollis , the three subspecies of C. lutetiana and C. erubescens (exsertcd nectary); (3) C. repens and all six subspecies of C. alpina (single-seeded fruits, stolons terminated by tubers, and viscin threads reduced or absent); (4) the six subspecies of C. alpina (unilocular ovaries with no trace of a second loculc and tardily opening perianth); (5) C. alpina subspecies alpina, micrantha, pacifica , and imaicola (flowers opening on ascending to erect pedicels); (6) C. alpina subspecies alpina, micrantha , and pacifica (translucent leaves); (7) C. alpina subspecies alpina and murantha (glabrous stems). Results of the cladistic analysis support most of the current systematic classification of the genus, except for the relationships among the three subspecies of C. lutetiana .     

A revision of the brassoline genus Selenophanes (Lepidoptera: Rhopalocera)

The Brassoline genus Selenophanes is revised: three new subspecies are described and three lectotypes designated. The nine known holotypes and two of the three lectotypes are figured. Along the Andes there is a fairly close agreement in the distribution of some of the species and subspecies of Selenophanes with the recently recognized endemic centres. East of the Andes there is no close correspondence between subspecies and endemic centres; each subspecies has, in general, a distribution across several centres. A similar distribution has been noted previously in the Brassoline genus Catoblepia.     

Morphological evidence of hybridization between Ramphocelus flammigerus subspecies (Passeriformes: Thraupidae) in Colombia

Habitat modifications such as deforestation and the increase of agricultural activities, have led to uncommon faunal interactions. In Colombia, this condition have caused the secondary contact of subspecies of Ramphocelus flammigerus populations from Cauca valley and the Pacific coast; and some specimens with rumps of intermediate colors of the subspecies have been found and are thought as hybrids. The objective of this study was to assess the presence of morphological evidence that may suggest hybridization and may explain the origin of individuals with intermediate coloration. We predict that if subspecies hybridize, they will be more similar in morphology when coexisting than when separated. Alternatively, coexisting subspecies might diverge in sympatry, because of selection to reduce competition for resources (character displacement). For this, a survey in 15 localities was undertaken: 10 allopatric areas (five for each subspecies), and five sympatric areas. Mist nets were used to capture individuals and a total of seven morphological characters were measured. To identify the patterns of morphological variation, we compared morphology of subspecies, sympatric and allopatric populations and individuals of intermediate colors. Consequently, we performed discriminant analysis and test for differences between groups by using 95% confidence intervals for log-ratio tests. A total of 112 individuals were captured (46 intermediate-colored individuals, 20 R. f. flammigerus, and 46 R.f. icteronotus. Discriminant analyses showed that subspecies were well differentiated, and intermediate individuals overlapped with them. Log-ratio test, based on Mahalanobis distances, showed that intermediate individuals were morphologically more similar to both subspecies than subspecies themselves. In addition, log-ratio tests showed that subspecies sympatric populations were similar but allopatric ones were different, and that individuals of intermediate colors were more similar to sympatric than to allopatric populations of the two subspecies. Therefore, morphological evidence supports the predictions of a hybridization hypothesis among the subspecies of R. flammigerus. In conclusion, the analysis of morphological variation in R. flammigerus suggests that hybridization between subspecies is occurring and that a process of genetic introgression is probably in progress.     

<Emphasis Type="Italic">Kailasius autocrator</Emphasis> (Avinov, 1913) (Lepidoptera,Papilionidae) found in the alai mountain ridge (the Pamir-Alai)

A new subspecies, Kailasius autocrator murun Korb, ssp. n., of the species Kailasius autocrator (Avinov, 1913) from the eastern part of the Alai Mountain Ridge is described. This subspecies differs from the other known ones in the smaller size (the fore-wing length is less than 23 mm) and in the presence of 5 black rounded spots in the submarginal area of the hind-wing upper side (4 spots in the nominotypical subspecies and K. a. pshartanus). The new subspecies is shown to be the most archaic one among the subspecies of the genus Kailasius by the wing pattern. Possible ways for the origin of local and small populations of morphologically different subspecies of the genus are discussed.     

The complete mitochondrial genomes of largemouth bass of the northern subspecies (Micropterus salmoides salmoides) and Florida subspecies (Micropterus salmoides floridanus) and their applications in the identification of largemouth bass species

The largemouth bass belongs to the family Centrarchidae, which includes two subspecies: the northern subspecies, Micropterus salmoides salmoides, and the Florida subspecies, Micropterus salmoides floridanus. In this study, the complete mitochondrial genomes of the two subspecies were sequenced, and their genetic differences were identified. The mitogenomes of M. s. salmoides and M. s. floridanus are 16,486 and 16,479?bp in length, respectively. The two subspecies consisted of 37 genes (13 protein-coding genes, 2 ribosomal RNA, and 22 transfer RNA), which are typical for vertebrate mtDNA. Phylogenetic analysis provided statistical support for the monophyly of the family Centrarchidae. Comparison of the two subspecies' mitogenomes revealed a relatively high number (450) of single nucleotide polymorphisms (SNPs) in protein-coding genes. We characterized SNPs in the partial cytochrome c oxidase subunit 1 gene of different individuals from three cultured populations, one wild northern subspecies population, and one wild Florida subspecies population. Twenty-eight SNPs were fixed with alternative nucleotides in the two subspecies, which could be used for differentiating them. Based on this gene, phylogenetic tree and genetic distance analyses supported that cultured largemouth bass in China belongs to the northern subspecies.     

A revision of the brassoline genus Catoblepia (Lepidoptera: Rhopalocera)

The brassoline genus Catoblepia is revised: eight new subspecies are described, nine new synonymies established, the status of four species and subspecies is revised, one species ( singularis ) is returned to the genus Opsiphanes and ten lectotypes are designated. All known holotypes (20) and lectotypes (10) are figured, many for the first time. The refined taxonomy reveals an interesting pairing of the Andean subspecies of xanthicles and berecynthia and it is suggested that diese may be mimetic pairs. There is close agreement in the distribution of the Andean species and subspecies with die endemic centres previously recognized; east of the Andes, however, diere is no close correspondence and each of the subspecies has, in general, a distribution across several endemic centres.     

小熊猫种内遗传及亚种分化研究(食肉目:浣熊科)

到目前为止,多数学者认为小熊猫种内已分指名亚种A.f.fulgens和川西亚种A.f.styani。然而,由于其个体毛色变异较大,一些学者对其亚种分化问题提出质疑。本文采用DNA指纹方法,对小熊猫的种内遗传和亚种分化进行了研究。结果表明,川西亚种所有个体在分子量约为8.4kb处均有一条指名亚种不具有的共有谱带,指名亚种所有个体则在分子量约为1.8kb处具有另外一条川西亚种不具有的共有谱带,且这两条谱带可通过双亲遗传给子代,说明此共有谱带可分别作为区分小熊猫川西亚种和指名亚种的特征带。另外,种内的遗传分化研究表明,川西亚种基因组的多态性强于指名亚种,且川西亚种内各个体之间的遗传变异高于指各亚种,说明小熊猫种内已形成遗传分化。因此,笔者认为以上研究结果为基因水平上进一步证明小熊猫种内已产生遗传分化,并形成两独立亚种,目前的亚种地位成立。     

Genetic variation across the historical range of the wild turkey (Meleagris gallopavo)

Genetic differences within and among naturally occurring populations of wild turkeys (Meleagris gallopavo) were characterized across five subspecies' historical ranges using amplified fragment length polymorphism (AFLP) analysis, microsatellite loci and mitochondrial control region sequencing. Current subspecific designations based on morphological traits were generally supported by these analyses, with the exception of the eastern (M. g. silvestris) and Florida (M. g. osceola) subspecies, which consistently formed a single unit. The Gould's subspecies was both the most genetically divergent and the least genetically diverse of the subspecies. These genetic patterns were consistent with current and historical patterns of habitat continuity. Merriam's populations showed a positive association between genetic and geographical distance, Rio Grande populations showed a weaker association and the eastern populations showed none, suggesting differing demographic forces at work in these subspecies. We recommend managing turkeys to maintain subspecies integrity, while recognizing the importance of maintaining regional population structure that may reflect important adaptive variation.     

Molecular and phenotypic divergence in the bluethroat (Luscinia svecica) subspecies complex

Subspecies complexes may provide valuable insights into the early stages of the speciation process. The bluethroat (Luscinia svecica) consists of many morphologically distinct subspecies that differ most strikingly in the ornamental colour pattern of the male throat. We investigated the genetic and phenotypic differentiation in this subspecies complex, using (i) microsatellite genotyping (11 loci) of a sample of 364 individuals from bluethroat populations in Europe and Asia, and (ii) spectrometric and morphological measurements of a sample of 131 museum skin specimens. Population genetic analyses, based on microsatellite allele frequency variation, revealed a slight but significant overall population differentiation (F(ST) = 0.042). There was a well-differentiated southern group of subspecies with white or no throat spots and a less-differentiated northern group of chestnut-spotted populations. Phylogenetic analyses indicated that the southern all-blue and white-spotted forms are ancestral to the chestnut-spotted subspecies. In addition to the qualitative variation in throat plumage pattern already described in the literature, we found significant quantitative variation among subspecies in hue, chroma and brightness of the ultraviolet (UV)/blue throat coloration, and this variation seemed to be unrelated to the phylogenetic distance between subspecies.     

麝属（MOSCHUS）的分类

麝属（ＭＯＳＣＨＵＳ）的分类ＣｏｌｉｎＰ．Ｇｒｏｖｅｓ（澳大利亚国立大学史前学和人类学系,堪培拉）王应祥（中国科学院昆明动物研究所,昆明）ＰｅｔｅｒＧｆｕｂｂ（英国伦敦Ｎ１７６ＰＥ,Ｄｏｗｎｈｉｌｌ公园路３５）麝类是古北区的特有类群,它们中的大多数种...     

Phylogeography-Based Delimitation of Subspecies Boundaries in the Common Pheasant (Phasianus colchicus)

To test the validity of subspecies status within the common pheasant (Phasianus colchicus), we used genetic data to assess differences among five subspecies distributed across the Loess Plateau in central China. Samples were collected from 191 individuals representing subspecies P. c. strauchi, P. c. satscheuensis, P. c. kiangsuensis, P. c. suehschanensis, and P. c. edzinensis. Analysis of mitochondrial genetic variation suggested that there were no phylogenetically distinct subspecies clades, and we could not exclude that hybridization has occurred among subspecies. A potential explanation of the observed pattern is that an increase in common pheasant rearing farms may have led to enforcement of hybridization between different subspecies. Consistent with phenotypic data, our analysis suggests that a previously identified common pheasant subspecies (P. c. strauchi) represents an intermediate form between the subspecies P. c. satscheuensis and P. c. suehschanensis.     

Genetic Divergence of Orangutan Subspecies (Pongo pygmaeus)

Microsatellites and mitochondrial DNA sequences were studied for the two subspecies of orangutans (Pongo pygmaeus), which are located in Borneo (P. p. pygmaeus) and Sumatra (P. p. abelii), respectively. Both subspecies possess marked genetic diversity. Genetic subdivision was identified within the Sumatran orangutans. The genetic differentiation between the two subspecies is highly significant for ND5 region but not significant for 16s rRNA or microsatellite data by exact tests, although F _ST estimates are highly significant for these markers. Divergence time between the two subspecies is approximately 2.3 ± 0.5 million years ago (MYA) estimated from our data, much earlier than the isolation of their geological distribution. Neither subspecies underwent a recent bottleneck, though the Sumatran subspecies might have experienced expansion approximately 82,000 years ago. The estimated effective population sizes for both subspecies are on the order of 10⁴. Our results contribute additional information that may be interpreted in the context of orangutan conservation efforts. Received: 13 June 2000 / Accepted: 30 January 2000     

中国鳞刺蛾属订正(鳞翅目,刺蛾科)(英文)

经过系统研究,发现我国的鳞刺蛾并不是一直被称为的眼鳞刺蛾Squamosa ocellata(Moore),共有2种和1亚种.首次报道了姹鳞刺蛾S.chalcites Orhant在我国有分布,描述了1新种,短爪鳞刺蛾S.brevisunca和1新亚种,云南亚种S.brevisunca yunnanensis.本文还描述了云南亚种的茧和老熟幼虫形态,编制了分种和亚种检索表,提供了成虫彩色照片和外生殖器特征图.模式标本保存在中国科学院动物研究所国家动物博物馆.     

Sequential evolution of Euphilotes (Lycaenidae: Scolitantidini) on their plant host Eriogonum (Polygonaceae: Eriogonoideae)

The relationship between the butterfly genus Euphilotes and their host plant genus Eriogonum in western North America is suggested to be one of sequential evolution rather than coevolution. Eriogonum, a genus of nearly 250 species, probably had a Miocene origin, but has had its modern distribution significantly influenced by recent Pleistocene glaciation. The evolution of Euphilotes, as a distinct genus of four sibling species, apparently postdates the establishment and recent proliferation of Eriogonum. Successful speciation in Euphilotes has been accomplished mainly through modifications in genitalia of those butterflies using a single species of Eriogonum. The subsequent proliferation of Euphilotes subspecies has been the result of host switching coupled with geographic isolation onto individual species of Eriogonum acting as restricted biogeographic islands. In the first instance, direct evolutionary competition for a limited resource (one species of Eriogonum) leads to partitioning of that resource by the butterflies whose entire life cycle is associated with that plant species. In the second instance, host switching and isolation have permitted establishment of minor subspecies without significant interaction with other subspecies of the same species. In instances where interspecific subspecies competition exists, resource partitioning, coupled with more pronounced genetic isolation, seem to have occurred resulting in more readily distinct subspecies. We speculate that the success of subspeciation in Euphilotes is dependent upon the numeric size and geographic extent of the host species. Euphilotes subspecies on plants of restricted distributions are themselves seemingly limited in their evolutionary potential as the most dynamic evolution of Euphilotes subspecies is that associated with widespread and variable Eriogonum species. In all instances, the tempo and mode of evolution in Euphilotes appears to be sequential as it follows and is seemingly dependent upon what has already occurred in Eriogonum.     

中国西南部明纹花鼠三个亚种的分化

明纹花鼠是东南亚地区的特有种,在中国有3亚种（阿萨姆亚种、滇西亚种、滇南亚种）,分布于藏东南、云南西南部和南部。以往主要根据外部形态特征进行分类。为探讨3亚种头骨性状的差异,在测量15个陛状的基础上,运用统计分析软件SPSS 11．0对其可测量性状进行多变量分析。结果及推测如下：①明纹花鼠3个亚种的地位是确定的。②在头骨15个性状中,两两亚种之间具有显著差异的性状：阿萨姆亚种与滇西亚种有8个（枕鼻长、吻宽、颤宽、眶间宽、后头宽、鼻骨宽、下齿列、下颌骨高）;阿萨姆亚种与滇西亚种有7个（颅全长、枕鼻长、颧宽、眶间宽、后头宽、下颌高、下颌骨高）;滇西亚种与滇南亚种有4个（吻宽、后头宽、鼻骨宽、下颌高）。③滇南亚种与滇西亚种之间的亲缘关系近：于两者各自与阿萨姆亚种之间的亲缘关系。     

Geographic divergence in floral morphology and scent in Linanthus dichotomus (Polemoniaceae)

Floral reproductive morphology and scent are of primary importance to pollinators in guiding foraging decisions. We compared the floral scent and reproductive morphology between two subspecies of Linanthus dichotomus (Polemoniaceae) that are taxonomically distinguished by geography and flowering time: the vespertine L. dichotomus subsp. dichotomus and the diurnal L. dichotomus subsp. meridianus. Disparity in flowering time between the two subspecies is accompanied by differences in flower visitors. We collected floral volatiles using dynamic headspace methods and analyzed them using gas chromatography and mass spectroscopy. Together, the subspecies produced a total of 39 floral scent compounds. Subspecies differ in the quantitative pattern of volatiles that attract noctuid moths (e.g., lilac aldehydes) vs. a more general suite of visitors (e.g., phenylacetaldehyde), but not in overall scent emission rates. A discriminant function analysis correctly distinguished between the two subspecies based on scent samples 86% of the time. We measured seven reproductive morphological traits; a discriminant function analysis distinguished between the two subspecies based on morphological samples 81% of the time. We found significant differences between subspecies in scent but not in individual morphological traits. The evidence presented here is most consistent with a hypothesis of pollinator-mediated selection.     

Genetic and morphological divergence between populations of the flatfish Platichthys flesus (L.) (Pleuronectidae)

Populations of the flounder, Platichthys flesus , were screened for electrophoretically detectable protein variation at up to 37 loci. Atlantic and North Sea populations (subspecies flesus ) were genetically very similar to one another ( I >0.99) but different from Adriatic (subspecies italicus ) and Black Sea (subspecies luscus ) populations. The values for genetic identity between subspecies were around 0.9. Diagnostic loci enabled specimens of flesus, italicus and luscus to be differentiated from one another. Samples of flesus showed two to three times the heterozygosity levels of italicus or luscus , consistent with the greater population size of flesus . Morphological comparisons enabled populations to be categorized to subspecies. Platichthys flesus italicus and luscus are valid subspecies: the terms are not synonyms. The genetic distance data provide an estimate of divergence time of the three subspecies at about 2 My ago, an estimate that seems reasonable in the light of present knowledge concerning the recent geological histories of the Mediterranean and Black Sea basins.