Oxygen concentration profiles and exchange in sediment cores with circulated overlying water

SUMMARY. 1. The overlying water of intact sediment cores was constantly stirred with an impeller at a rate sufficient to mix turbulently the water column and maintain the diffusive boundary layer at a determined thickness. The system allowed standardization of water circulation in laboratory sediment core experiments.
2. Both oxygen concentration and oxygen penetration depth in the sediments decreased, the former by 70% and the latter from 4.2 mm to 2.0 mm, when the overlying water was not stirred for 24 h, as measured with oxygen microelectrodes in a lake sediment core.
3. Oxygen profiles measured in sediment cores in the laboratory were similar to those measured in situ when the overlying water was stirred with an impeller at such a rate that a similar thickness of the diffusive boundary layer at the sediment-water interface developed in the laboratory as that in situ.
4. Sediment oxygen consumption was calculated from: (1) measured oxygen profiles in the diffusive boundary layer and the molecular diffusion coefficient for oxygen in water; (2) the measured oxygen decrease in the top of the sediments and the estimated diffusion coefficient in the sediment; and (3) by oxygen differences in the overlying water after incubation of sediment cores.     

Internal wave-induced redox shifts affect biogeochemistry and microbial activity in sediments: a simulation experiment

Internal waves (seiches) are well-studied physical processes in stratified lakes, but their effects on sediment porewater chemistry and microbiology are still largely unexplored. Due to pycnocline oscillations, sediments are exposed to recurrent changes between epilimnetic and hypolimnetic water. This results in strong differences of environmental conditions, which should be reflected in the responses of redox-sensitive biogeochemical processes at both, the sediment–water interface and deeper sediment layers. We tested in a series of mesocosm experiments the influence of seiche-induced redox changes on porewater chemistry and bacterial activity in the sediments under well controlled conditions. Thereby, we excluded effects of changes in current and temperature regimes. For a period of 10 days, intact sediment cores from oligotrophic Lake Stechlin were incubated under constant (either oxic or anoxic) or alternating redox conditions. Solute concentrations were measured as porewater profiles in the sediment, while microbial activity was determined in the upper 0.5 cm of sediment. Oxic and alternating redox conditions resulted in similar ammonium, phosphate, and methane porewater concentrations, while concentrations of each analyte were considerably higher in anoxic cores. Microbial activity was clearly lower in the anoxic cores than in the oxic and the alternating cores. In conclusion, cores with intermittent anoxic phases of up to 24 hours do not differ in biogeochemistry and microbial activities from static oxic sediments. However, due to various physical processes seiches cause oxygen to penetrate deeper into sediment layers, which affects sediment redox gradients and increase microbial activity in seiche-influenced sediments.     

Benthic pH gradients across a range of shelf sea sediment types linked to sediment characteristics and seasonal variability

This study used microelectrodes to record pH profiles in fresh shelf sea sediment cores collected across a range of different sediment types within the Celtic Sea. Spatial and temporal variability was captured during repeated measurements in 2014 and 2015. Concurrently recorded oxygen microelectrode profiles and other sedimentary parameters provide a detailed context for interpretation of the pH data. Clear differences in profiles were observed between sediment type, location and season. Notably, very steep pH gradients exist within the surface sediments (10–20 mm), where decreases greater than 0.5 pH units were observed. Steep gradients were particularly apparent in fine cohesive sediments, less so in permeable sandier matrices. We hypothesise that the gradients are likely caused by aerobic organic matter respiration close to the sediment–water interface or oxidation of reduced species at the base of the oxic zone (NH₄ ⁺, Mn²⁺, Fe²⁺, S^?). Statistical analysis suggests the variability in the depth of the pH minima is controlled spatially by the oxygen penetration depth, and seasonally by the input and remineralisation of deposited organic phytodetritus. Below the pH minima the observed pH remained consistently low to maximum electrode penetration (ca. 60 mm), indicating an absence of sub-oxic processes generating H⁺ or balanced removal processes within this layer. Thus, a climatology of sediment surface porewater pH is provided against which to examine biogeochemical processes. This enhances our understanding of benthic pH processes, particularly in the context of human impacts, seabed integrity, and future climate changes, providing vital information for modelling benthic response under future climate scenarios.     

Exchange of Cu and Cd across the sediment-water interface in intertidal mud flats from Ria Formosa (Portugal)

Depth profiles of Fe, Mn, (HS)_t, Cu and Cd concentrations in pore water were determined on a seasonal scale in intertidal sediments of Ria Formosa. Concentrations of Cu and Cd were also determined in near-bottom water during the short period that water inundates the sediment. A maximum near the sediment-water interface was observed in depth profiles of Mn and Fe concentrations followed by a decrease with depth. Otherwise, depth profiles of (HS⁻)_t were irregular but peak concentrations was observed below Mn and Fe maximum. Although subsurface maximum was observed at deeper layers for Cu and Cd, the profiles shape varied among sites and sampling dates. This suggests site specificity and alterations associated with early diagenetic reactions. In order to assess exchanges of Cu and Cd across the sediment water interface, diffusive fluxes and advective transport were estimated. Both contribute substantially to the daily transfer of Cd from intertidal sediments to the water column of Ria Formosa. In the case of Cu, the flux associated with tidal flooding (advective flux) was the major contributor. Presumably, the exchange of trace elements between the sediment-water interface in intertidal areas of macro- and meso-tidal systems are underestimated since do not take into consideration the pulse contribution associated with tidal flooding.     

Nitrate uptake rate in anoxic profundal sediments from a eutrophic reservoir

There is renewed interest in the use of nitrate to treat the profundal zone of lakes to inhibit anaerobic biogeochemical processes that result in the degradation of bottom water quality (e.g., sediment phosphorus release, mercury methylation). In this study we used experimental sediment–water interface chambers to quantify the rate of sediment nitrate uptake (SNU) in profundal sediments from Lake Perris, a eutrophic raw water reservoir in Southern California. Deoxygenated chamber water was spiked with nitrate, and nitrate concentration was monitored over time under quiescent conditions, followed by mixed conditions with average water velocities of 1 cm/s. Key findings included: (1) SNU decreased with decreasing nitrate concentration, (2) SNU was higher under mixed versus quiescent conditions by nearly 50%, and (3) nitrate uptake as a function of nitrate concentration followed a conventional sediment oxygen demand model in which nitrate uptake was proportional to the square root of nitrate concentration. The probable mechanism for elevated SNU under mixed conditions was an increased diffusional concentration gradient combined with a decrease in the diffusional boundary layer at the sediment–water interface, both of which enhanced the flux of nitrate from overlaying water into sediment. Managers planning to implement lake nitrate addition should account for induced nitrate demand when determining dosing rates. For example, based on our modeling efforts from this data set, SNU in Lake Perris could range by an order of magnitude, from around 12 mg N/m²/d under quiescent, low nitrate conditions (0.1 mg N/l) to around 120 mg N/m²/d under mixed, high nitrate conditions (5 mg N/l). Handling editor: L. Naselli-Flores     

Spectroscopic characterization and molecular weight distribution of dissolved organic matter in sediment porewaters from Lake Erhai, Southwest China

Dissolved organic matter (DOM) in sediment porewaters from Lake Erhai, Southwest China was investigated using dissolved organic carbon (DOC) concentration, UV absorbance, fluorescence and molecular weight distribution. DOC exhibited a high concentration at the sediment–water interface with a rapid decrease to the oxic–anoxic interface at approximately 7 cm, and then increased with depth. Similar trends were also found for the UV absorption coefficients at 254 and 280 nm in the porewaters. DNA in the sediment was also measured, which confirmed the high abundance of aerobic bacteria in the upper layer of the sediment. Both humic-like (peaks A and C) and protein-like (peaks B and D) fluorescence were observed in the porewater DOM, and their fluorescence intensities exhibited a similar porewater profile as DOC concentration. A strong correlation was found between the peak fluorescence intensity ratio r(A, C) and r(D, B). Both the fluorescence index and UV absorption coefficient at 254 nm suggested a dramatic increase in aromaticity of porewater DOM across the oxic–anoxic interface. Porewater DOM exhibited a multimodal distribution of molecular weight with a relatively low polydispersity. The results of this study offer significant insight into the nature and properties of DOM in freshwater ecosystems.     

Using porewater profiles to assess nutrient availability in seagrass-vegetated carbonate sediments

We measured porewater profiles of inorganic (NH₄ ⁺, NO₃ ^–(+NO₂ ^–), PO₄ ^3– (hereafter referred to as DIP)) and organic (DON, DOP) nutrients in seagrass-vegetated sediments at two sites in a shallow bay in Bermuda within close proximity (200 m) but subject to different nutrient loading. At both sites, total dissolved and inorganic nutrient concentrations were usually 1–2 orders of magnitude higher in the sediments than in the water column, with the exception of NO₃ ^–. Organic N and P were significant components of the total dissolved nutrient pools both in the sediment porewater and in the overlying water column (up to 75% for DON and 40% for DOP), and may be important in meeting plant nutrient demands. We used two approaches to examine how well porewater nutrient concentrations reflected the relative availabilities of N and P for seagrasses: (1) a simple stoichiometric nutrient regeneration model based on the N:P ratio of decomposing organic matter and porewater NH₄ ⁺ concentrations to predict porewater DIP, and (2) fitting of the porewater profiles to estimate rates of net nutrient production (or consumption), which reflects the balance between nutrient sources and sinks in the rhizosphere. The stoichiometric model indicated that sediment porewaters were depleted in P relative to N in the low-nutrient outer bay site, and enriched in P relative to N in the higher-nutrient inner bay site. These results are consistent with the mechanism of carbonate sediments in oligotrophic tropical environments being a strong sink for dissolved inorganic P and our previous work suggesting that nutrient enrichment causes P to become disproportionately more available than N. Net nutrient production rates of porewater P at both sites and N at the inner bay site were low (typically < 2%) relative to the nutrient demands of the seagrasses. The implications of the profile interpretation are two-fold: (1) the low rates of net nutrient production indicate diffusive losses from the root zone were insignificant and that nutrient turnover rates were high, except in the P-limited outer bay where N accumulated in sediment porewaters; and (2) because standing stock nutrient concentrations often represent a small fraction of the total nutrients cycled in the sediments, they are in many cases a poor indicator of nutrient availability. Based on our estimates of losses from the root zone, decomposition, and plant uptake we have constructed a rough budget for the cycling of P and N at our two sites.     

Cable bacteria extend the impacts of elevated dissolved oxygen into anoxic sediments

Profound biogeochemical responses of anoxic sediments to the fluctuation of dissolved oxygen (DO) concentration in overlaying water are often observed, despite oxygen having a limited permeability in sediments. This contradiction is indicative of previously unrecognized mechanism that bridges the oxic and anoxic sediment layers. Using sediments from an urban river suffering from long-term polycyclic aromatic hydrocarbons (PAHs) contamination, we analyzed the physicochemical and microbial responses to artificially elevated DO (eDO) in the overlying water over 9 weeks of incubation. Significant changes in key environmental parameters and microbial diversity were detected over the 0–6 cm sediment depth, along with accelerated degradation of PAHs, despite that eDO only increased the porewater DO in the millimeter subfacial layer. The dynamics of physicochemical and microbial properties coincided well with significantly increased presence of centimeter-long sulfide-oxidizing cable bacteria filaments under eDO, and were predominantly driven by cable bacteria metabolic activities. Phylogenetic ecological network analyses further revealed that eDO reinforced cable bacteria associated interspecific interactions with functional microorganisms such as sulfate reducers, PAHs degraders, and electroactive microbes, suggesting enhanced microbial syntrophy taking advantage of cable bacteria metabolism for the regeneration of SO₄²⁻ and long-distance electron transfer. Together, our results suggest cable bacteria may mediate the impacts of eDO in anaerobic sediments by altering sediment physiochemical properties and by reinforcing community interactions. Our findings highlight the ecological importance of cable bacteria in sediments.Subject terms: Freshwater ecology, Water microbiology, Community ecology     

A semi-analytical model for dissolved oxygen mass transfer coefficient at the sediment–water interface

Relying on the fundamental principles of mass transport in a turbulent flow, we have developed a semi-analytical model for a mass transfer coefficient in a sediment water interface over a smooth bed. The governing equations with boundary conditions reflect a mechanism of shear dispersion in a turbulent flow. The model is formulated in terms of the Sherwood-Reynolds-Schmidt functional dependence. Unlike previous regression-type models, the mass transfer coefficient at the sediment-water interface is parameterized by the friction coefficient. Flow conditions over a smooth bed ranging in Reynolds number from 1800 to 7000 were used to verify the model. The predicted mass transfer coefficients are in very good agreement with the experimental data.     

Sediment-water fluxes of nutrients in an Antarctic coastal environment: influence of bioturbation

Rates of exchanges of nitrate and ammonium across the sediment-water interface were measured in an inshore marine environment at Signy Island, South Orkney Islands, Antarctica, over 6 months from August 1991 to February 1992. The sediment was a source of ammonium to the water column but a sink of nitrate, although nitrate exchange rates were very variable. Concentration profiles of nitrate and ammonium in the sediment porewater corroborated the measured vertical exchanges. Bioturbation, by a largely amphipod benthic infauna which was confined to the top 2 cm of sediment, was investigated experimentally. Removal of bioturbation depressed sedimentary O₂ uptake by 33% and sedimentary release of NH₄ ⁺ by 50%. In contrast, in the absence of bioturbation, the removal of NO₃ ^– from the water column by the sediment increased in rate. The measured fluxes of ammonium and nitrate from the sediment did not match with the amount of nitrogen mineralised within the sediment, and urea may account for the difference. It is suggested that the export of nitrogen from the bottom sediment may be significant in sustaining primary production in the Antarctic inshore environment. Ammonium and urea are preferred to nitrate as a nitrogen source by phytoplankton. The nitrate concentrations in the sediment porewater were low, but a large pool of nitrate was identified in the top 0–2 cm layer, which was released by KCl extraction or by freezing of the sediment. This extractable pool of nitrate did not equilibrate with the soluble nitrate pool in the sediment, but seemed to be released from components of the benthic infauna, which were also largely confined to the top 0–2 cm. The physiological role of this nitrate is unknown.     

Porewater nitrate profiles in sandy sediments hosting submarine groundwater discharge described by an advection�Cdispersion-reaction model

In order to separate the effects of reaction from those of transport on vertical porewater concentration profiles of nitrate at an intertidal groundwater seepage site (Ria Formosa, Portugal), a free-boundary solution of an Advection?CDispersion-Reaction (ADR) model was used to describe the shape of NO₃ ^? concentration profiles collected in situ. The model includes three sequential reaction layers, postulated with basis on the local distribution of the benthic organic C:N ratio and major identifiable changes in concentration gradients with depth. The advective nature of the system was used to propose a mass balance simplification to the constitutive equations permitting a free-boundary solution, which in turn allowed prediction of sediment?Cwater fluxes of NO₃ ^?. Sensitivity analysis confirmed that in similarly advective-dominated environments, both the porewater concentration distribution and the interfacial fluxes are strongly dependant on seepage rate and benthic reactivity. The model fitted the measured profiles with high correlation (usually higher than 90%), and model-derived sediment?Cwater NO₃ ^? fluxes were in good agreement to fluxes measured in situ with Lee-type seepage meters (0.9948 slope, R² = 0.8672, n = 8). Nitrate oxidation and reduction rates extracted from model fits to the data (10^?2?C10⁰ mmol m^?2 h^?1) agreed with literature values. Because dispersive effects are not included in direct mass balances based on the porewater concentrations, the model presented here increases the accuracy of apparent reaction rate estimates and geochemical zonation at Submarine Groundwater Discharge (SGD) sites. The results establish the importance of sandy sediments as reactive interfaces, able to modulate mass transfer of continental-derived contaminants into coastal ecosystems. We suggest that tools such as the one described here might be used to advantage in preparing further experimental studies to elucidate how benthic reactivity affects nitrate distribution and fluxes in sediments affected by SGD.     

Evaluation of ammonium and phosphate release from intertidal and subtidal sediments of a shallow coastal lagoon (Ria Formosa – Portugal): a modelling approach

During an annual cycle, overlying water and sediment cores were collected simultaneously at three sites (Tavira, Culatra and Ramalhete) of Ria Formosa’s intertidal muddy and subtidal sandy sediments to determine ammonium, nitrates plus nitrites and phosphate. Organic carbon, nitrogen and phosphorus were also determined in superficial sediments. Ammonium and phosphate dissolved in porewater were positively correlated with temperature (P < 0.01) in muddy and sandy sediments, while the nitrogen-oxidized forms had a negative correlation (P < 0.02) in muddy sediments probably because mineralization and nitrification/denitrification processes vary seasonally. Porewater ammonium profiles evidenced a peak in the top-most muddy sediment (380 μM) suggesting higher mineralization rate when oxygen is more available, while maximum phosphate concentration (113 μM) occurred in the sub-oxic layer probably due to phosphorus desorption under reduced conditions. In organically poor subtidal sandy sediments, nutrient porewater concentrations were always lower than in intertidal muddy sediments, ranging annually from 20 μM to 100 μM for ammonium and from 0.05 μM to 16 μM for phosphate. Nutrient diffusive fluxes predicted by a mathematical model were higher during summer, in both muddy (104 nmol cm⁻² d⁻¹––NH₄⁺; 8 nmol cm⁻² d⁻¹––HPO₄⁻²) and sandy sediments (26 nmol cm⁻² d⁻¹––NH₄⁺; 1 nmol cm⁻² d⁻¹––HPO₄⁻²), while during lower temperature periods these fluxes were 3–4 times lower. Based on simulated nutrient effluxes, the estimated annual amount of ammonium and phosphate exported from intertidal areas was three times higher than that released from subtidal areas (22 ton year⁻¹––NH₄⁺; 2 ton year⁻¹––HPO₄⁻²), emphasizing the importance of tidal flats to maintain the high productivity of the lagoon. Global warming scenarios simulated with the model, revealed that an increase in lagoon water temperature only produces significant variations (P < 0.05) for NH₄⁺ in porewater and consequent diffusive fluxes, what will probably affect the system productivity due to a N/P ratio unbalance.     

Hydrodynamical impact on biogeochemical processes in aquatic sediments

Boundary layer flow characteristics and sediment permeability control pathways and magnitude of material exchange in the surface layer of aquatic sediments. In fine-grained cohesive beds, bottom currents and sediment microtopography shape the diffusive boundary layer and locally produce areas where the interfacial solute fluxes are increased or reduced. Where sediment permeabilities exceed 10^–12 m², advective pore water flows driven by boundary flow–topography interaction dominate the sediment–water exchange of matter, with transport rates that exceed those of molecular diffusion by two orders of magnitude and more. The curved paths of the advective pore flows through the surface layers of such sandy beds generate complex three-dimensional biogeochemical patterns with extreme spatial and temporal variability ranging from millimeters to decimeters and seconds to seasons. High filtration rates, a bacterial community firmly attached to the mineral grains, rapidly changing biogeochemical zonations and winnowing of the sediment surface layers by frequent resuspension convert these beds into effective biocatalytical filter systems.     

Spatial and temporal variations of the water–sediment thermal structure in shallow ice-covered Lake Vendyurskoe (Northwestern Russia)

The thermal structures in the vicinity of the ice–water and water–sediment boundaries of a shallow lake, L. Vendyurskoe (Northwestern Russia) during four winter seasons are described. The heat flux at the water-ice boundary was 0.1–0.2 W m⁻² during winter. The maximal heat flux at the water–sediment boundary was 4.5 W m⁻² at the beginning and 0.5 W m⁻² at the end of winter. The daily average value of the solar radiation penetrating into the water was 0.5 W m⁻² during main part of winter and 2–50 W m⁻² during April. During winter, temperature showed an oscillation in the vicinity of the sediment-water interface. Most periods corresponding to the main oscillation frequencies in the near-bottom water layer (0–0.4 m) and upper layer sediment (0–0.35 m), identified by FFT analysis, fall within the scale of synoptic variations (3–10 days), and in a number of cases were equal to 1 day. The theoretical periods of the first baroclinic seiche mode of Lake Vendyurskoe are 4.5–8.5 days that compares well with identified temperature oscillation periods. The comparison between the rate of heat content change in a water column and the difference of vertical heat fluxes from sediment to water and from water to ice show that the horizontal heat transport takes place in the lake during winter as a result of heat advection along the bottom.     

In situ study of short-term variations of redox species chemistry in intertidal permeable sediments of the Arcachon lagoon

We investigated the composition of porewaters in intertidal sediments in response to the diurnal rise and fall of tides. For this reason, we deployed an in situ voltammetric system to measure vertical distribution and time-series at defined depths of O₂, Mn(II), Fe(II), and S(?II) in the porewater of permeable sediments from a protected beach in the Arcachon Bay. We also report microprofiles of O₂ and pH together with sediment properties (organic carbon, particulate reactive manganese and iron, porosity and permeability). Results shows that the oxygen dynamics in the upper sediment at low tide appeared to be mainly controlled by microphytobenthos activity, which may migrate downward just before immersion. The tidal forcing seemed to influence the oxygen dynamic in a minor way through flushing of the uppermost sediment porewater layer at the beginning and end of immersion. Vertical profiles and time-series measurements showed that the distributions of reduced species varied with tides. Although this work reveals that the upper sediment layer was subject to redox changes, the response of vertical distributions of redox species to tidal and night?Cday cycles did not have a cyclic pattern.     

Breaking the boundary — The key to bottom recovery? The role of mysid crustaceans in oxygenizing bottom sediments

Large areas of the Baltic Sea bottoms suffer from low oxygen conditions and anoxia, impoverishing the benthic macrofauna. The important macrofaunal function bioturbation, which improves the transport of oxygen into the sediment does not occur in an absence of benthic macrofauna. The objective of this study was to investigate if a semi-pelagic species, like the mysid crustacean Mysis relicta, is able to improve the oxygen conditions of the sediment and thereby acts as a facilitator for re-colonization of azoic sediments by benthic species. We also wanted to study the potential of M. relicta in breaking the diffusive boundary layer under varying degrees of oxygen deficiency. Three types of sediment qualities were used to mimic the severity of oxygen deficiency. Under normoxia, moderate hypoxia (40% O₂) and hypoxia, (20% O₂) M. relicta's bioturbation activity was studied by recording oxygen profiles in sediments with and without mysids. In normoxia the mysids were able to oxygenize the sediment independent of sediment quality. The results show that mysids are able to bioturbate the sediment to some extent in hypoxia independent of the sediment quality. In all treatments with mysids the diffusive boundary layer was more or less completely broken down. In normoxia treatment with sediment of very low quality the mysids prevented growth of the sulphur bacteria Beggiatoa spp. which usually occurs on anoxic bottoms. The ability of this semi-pelagic species to improve benthic oxygen conditions can be seen as an important first step in re-colonization by real benthic species.     

Microelectrode measurements of local mass transport rates in heterogeneous biofilms

Microelectrodes were used to measure oxygen profiles and local mass transfer coefficient profiles in biofilm clusters and interstitial voids. Both profiles were measured at the same location in the biofilm. From the oxygen profile, the effective diffusive boundary layer thickness (DBL) was determined. The local mass transfer coefficient profiles provided information about the nature of mass transport near and within the biofilm. All profiles were measured at three different average flow velocities, 0.62, 1.53, and 2.60 cm sec-1, to determine the influence of flow velocity on mass transport. Convective mass transport was active near the biofilm/liquid interface and in the upper layers of the biofilm, independent of biofilm thickness and flow velocity. The DBL varied strongly between locations for the same flow velocities. Oxygen and local mass transfer coefficient profiles collected through a 70 micrometer thick cluster revealed that a cluster of that thickness did not present any significant mass transport resistance. In a 350 micrometer thick biofilm cluster, however, the local mass transfer coefficient decreased gradually to very low values near the substratum. This was hypothetically attributed to the decreasing effective diffusivity in deeper layers of biofilms. Interstitial voids between clusters did not seem to influence the local mass transfer coefficients significantly for flow velocities of 1.53 and 2.60 cm sec-1. At a flow velocity of 0.62 cm sec-1, interstitial voids visibly decreased the local mass transfer coefficient near the bottom.     

In situ oxygen dynamics in coral-algal interactions

Background

Coral reefs degrade globally at an alarming rate, with benthic algae often replacing corals. However, the extent to which benthic algae contribute to coral mortality, and the potential mechanisms involved, remain disputed. Recent laboratory studies suggested that algae kill corals by inducing hypoxia on the coral surface, through stimulated microbial respiration.

Methods/Findings

We examined the main premise of this hypothesis by measuring in situ oxygen microenvironments at the contact interface between the massive coral Porites spp. and turf algae, and between Porites spp. and crustose coralline algae (CCA). Oxygen levels at the interface were similar to healthy coral tissue and ranged between 300–400 µM during the day. At night, the interface was hypoxic (∼70 µM) in coral-turf interactions and close to anoxic (∼2 µM) in coral-CCA interactions, but these values were not significantly different from healthy tissue. The diffusive boundary layer (DBL) was about three times thicker at the interface than above healthy tissue, due to a depression in the local topography. A numerical model, developed to analyze the oxygen profiles above the irregular interface, revealed strongly reduced net photosynthesis and dark respiration rates at the coral-algal interface compared to unaffected tissue during the day and at night, respectively.

Conclusions/Significance

Our results showed that hypoxia was not a consistent feature in the microenvironment of the coral-algal interface under in situ conditions. Therefore, hypoxia alone is unlikely to be the cause of coral mortality. Due to the modified topography, the interaction zone is distinguished by a thicker diffusive boundary layer, which limits the local metabolic activity and likely promotes accumulation of potentially harmful metabolic products (e.g., allelochemicals and protons). Our study highlights the importance of mass transfer phenomena and the need for direct in situ measurements of microenvironmental conditions in studies on coral stress.     

A cryomicroscope for the analysis of solute polarization during freezing

A better understanding of the freezing process in the extracellular suspension medium implies the consideration of deviations from equilibrium, i.e., unsteady diffusion of heat and mass with a moving phase boundary. Such phenomena, especially solute redistribution in front of the advancing phase interface, can readily be investigated with a special cryomicroscope equipped with a spectrophotometer. A major advantage of this method is the combination of quantitative measurements in conjunction with visual observations, allowing a control of the solid-liquid interface morphology (planar-cellular-dendritic) which is crucial to the solidification process. The freezing stage designed for this purpose produces a temperature field in the sample layer resembling that within a large plate-shaped container, and hence well-defined thermal gradients (having a dominant effect on the shape of the interface). Aqueous solutions of NaMnO₄, exhibiting a maximum absorption at 525 nm and a phase diagram as well as diffusive properties very similar to NaCl in water, turned out to be a particularly suitable model for simulating of solidification of biological solutions. As long as freezing is unidimensional (planar), the concentration profiles can be scanned on-line, while multidimensional (cellular, dendritic) structures require off-line densitometric determination from photomicrographs. The experimental results agree quite well with mathematical models for both types of solidification. The observed transition points between planar freezing and higher-order structures correspond to those resulting from constitutional supercooling, a criterion roughly indicating the conditions for interface instability based on temperature and concentration gradients at the phase boundary.     

Factors influencing the extent and development of the oxic zone in sediments

Dissolved oxygen concentrations in river-sediment porewaters are reported and modelled using a zero-order reaction rate and the Monod equation. After mixing the sediments and allowing settling, the dissolved oxygen profile in the bed-sediment was expected to reach a steady-state rapidly (< 1 h). However changes in the vertical profile of oxygen over a period of 38 days revealed that the penetration of oxygen increased and the dissolved oxygen flux at the interface decreased with time, probably as the oxidation kinetics of organic matter and redox reactions in the sediment changed. Experiments with three contrasting silt and sand dominated sediments (organic matter content between 0.9 and 18%) at two water velocities (ca 10 and 20 cm s^–1) showed that the dissolved oxygen profiles were independent of velocity for each of the sediments. The most important controls on the reaction rate were the organic matter content and specific surface area of the sediment. A viscous diffuse-boundary-layer above the sediment was only detected in the experiments with the silt sediment where the sediment oxygen demand was relatively high. In the coarser sediments, the absence of a diffuse layer indicated that slow oxidation processes in the sediment controlled the dissolved oxygen flux at the interface. The problem of determining a surface reference in coarse sediment is highlighted. The results are discussed with reference to other studies including those concerned with estuarine and marine sediments.