Gut–organ axis: a microbial outreach and networking

Human gut microbiota (GM) includes a complex and dynamic population of microorganisms that are crucial for well-being and survival of the organism. It has been reported as diverse and relatively stable with shared core microbiota, including Bacteroidetes and Firmicutes as the major dominants. They are the key regulators of body homeostasis, involving both intestinal and extra-intestinal effects by influencing many physiological functions such as metabolism, maintenance of barrier homeostasis, inflammation and hematopoiesis. Any alteration in GM community structures not only trigger gut disorders but also influence other organs and cause associated diseases. In recent past, the GM has been defined as a ‘vital organ’ with its involvement with other organs; thus, establishing a link or a bi- or multidirectional communication axis between the organs via neural, endocrine, immune, humoral and metabolic pathways. Alterations in GM have been linked to several diseases known to humans; although the exact interaction mechanism between the gut and the organs is yet to be defined. In this review, the bidirectional relationship between the gut and the vital human organs was envisaged and discussed under several headings. Furthermore, several disease symptoms were also revisited to redefine the communication network between the gut microbes and the associated organs.     

肠缺血-再灌流大鼠血浆二胺氧化酶活性的变化与肠损伤的关系

观察并探讨了肠缺血 -再灌流大鼠血浆二胺氧化酶 (DAO)活性的变化规律及其与肠损伤相关指标变化的关系。结果显示 ,肠缺血 -再灌流过程中血浆DAO活性呈双峰升高 :第一峰在肠缺血期 ,时相上早于血浆内毒素 (LPS)和D -乳酸的升高 ;第二峰在再灌流后 2h ,在肠损伤相关指标变化的峰值之后。结果提示 ,肠粘膜上皮细胞和 (或 )肠屏障受到缺血和再灌流二次损伤的打击 ;血浆DAO活性作为反映肠损伤的指标特异性强、灵敏度高 ,在临床上对病程判断及并发症的防治有一定的指导意义。     

肠缺血-再灌流大鼠血浆二胺氧化酶活性的变化与肠损伤的关系

观察并探讨了肠缺血 -再灌流大鼠血浆二胺氧化酶 (DAO)活性的变化规律及其与肠损伤相关指标变化的关系。结果显示 ,肠缺血 -再灌流过程中血浆DAO活性呈双峰升高 :第一峰在肠缺血期 ,时相上早于血浆内毒素 (LPS)和D -乳酸的升高 ;第二峰在再灌流后 2h ,在肠损伤相关指标变化的峰值之后。结果提示 ,肠粘膜上皮细胞和 (或 )肠屏障受到缺血和再灌流二次损伤的打击 ;血浆DAO活性作为反映肠损伤的指标特异性强、灵敏度高 ,在临床上对病程判断及并发症的防治有一定的指导意义。     

Mitochondria could be a potential key mediator linking the intestinal microbiota to depression

The intestinal microbiota has been reported to affect depression, a common mental condition with severe health-related consequences. However, what mediates the effect of the intestinal microbiota on depression has not been well elucidated. We summarize the roles of the mitochondria in eliciting beneficial effects on the gut microbiota to ameliorate symptoms of depression. It is well known that mitochondria play a key role in depression. An important pathogenic factor, namely inflammatory response, may adversely impact mitochondrial functionality to maintain cellular homeostasis. Dysfunction of mitochondria not only affects neuronal function but also reduces neuron cell numbers. We posit that the intestinal microbiota could affect neuronal mitochondrial function through short-chain fatty acids such as butyrate. Brain inflammatory processes could also be affected through the modulation of gut permeability and blood lipopolysaccharide levels. Aberrant mitochondria functionality coupled to adverse cellular homeostasis could be a key mediator for the effect of the intestinal microbiota on the progression of depression.     

Identification of spores in the polycentric anaerobic gut fungi which enhance their ability to survive

Two new isolates of the gut fungi were obtained from the rumen digesta and faeces of a cow. These isolates, designated Anaeromyces following rDNA typing, displayed a polycentric growth habit but differed from all other gut fungi in that they were able to survive in the laboratory for considerable periods without the need for sub-culture. Light microscopy of preparations from old liquid-grown cultures revealed the presence of DNA-containing spores with two or four chambers. A comparative evaluation of the growth produced when fresh media were inoculated with a sample originating from young or old cultures revealed that active growth was delayed with the inoculum from the older culture. We propose that the chambered spores observed in these cultures provide an alternative path in the life cycle of these fungi and may function as a resting stage within the anaerobic environment of the herbivore gut.     

五羟色胺和多巴胺与攻击行为的关联研究进展

五羟色胺（5-HT）和多巴胺（DA）是影响攻击行为的重要神经递质。参与这两种神经递质合成和分解、运输及信号转导等过程的物质均可能影响攻击行为,如影响5-HT作用的色氨酸、色氨酸羟化酶、单胺氧化酶、5-羟吲哚乙酸及5-HT转运体和5-HT受体;影响DA作用的多巴胺β羟化酶和儿茶酚胺邻位甲基转移酶以及DA转运体。未来攻击行为研究,应考虑色氨酸自身代谢、受体亚型及其他单胺类和儿茶酚胺类神经递质的影响。将肠道微生物纳入攻击行为研究也是未来研究的新方向。     

肠道菌群-肠-脑-肌轴信号交流的研究进展

肠道菌群及其代谢产物在老年神经退行性疾病、胃肠道疾病以及肌肉骨骼系统性疾病的发病与康复中的作用越来越受到关注。肠道菌群及其代谢产物可通过免疫、内分泌和神经系统等多种途径调节大脑神经或肌肉骨骼系统功能;反之,肠道、大脑或肌肉骨骼系统也可通过炎症、代谢或线粒体通路作用于肠道系统,调节肠道菌群微生态,形成肠道菌群与肠-脑、肠-肌、 肠-脑-肌之间的双向信号交流机制,从而影响机体健康。因此,本综述总结了肠道菌群如何通过代谢产物、肠道通透性和免疫-神经通路建立起肠-脑-肌之间的相互联系,为促进大脑神经的可塑性和改善肌肉健康提供新思路。     

Effects of oral sialic acid on gut development,liver function and gut microbiota in mice

Sialic acid (N-acetylneuraminic acid), a 9-carbon monosaccharide, has been widely studied in immunology, oncology and neurology. However, the effects of sialic acid on organ and intestinal development, liver function and gut microbiota were rarely studied. In this study, we found that oral sialic acid tended to increase the relative weight of liver and decreased the serum aspartate aminotransferase (GPT) activity. In addition, sialic acid treatment markedly reduced gut villus length, depth, the ratio of villus length/depth (L/D), areas, width and the number of goblet cells. Furthermore, gut microbes were changed in response to oral sialic acid, such as Staphylococcus lentus, Corynebacterium stationis, Corynebacterium urealyticum, Jeotgalibaca sp_PTS2502, Ignatzschineria indica, Sporosarcina pasteurii, Sporosarcina sp_HW10C2, Facklamia tabacinasalis, Oblitimonas alkaliphila, Erysipelatoclostridium ramosum, Blautia sp_YL58, Bacteroids thetaiotaomicron, Morganella morganii, Clostridioides difficile, Helicobacter tryphlonius, Clostridium sp_Clone47, Alistipes finegoldii, [pseudomonas]_geniculata and Pseudomonas parafulva at the species level. In conclusion, oral sialic acid altered the intestinal pathological state and microbial compositions, and the effect of sialic acid on host health should be further studied.     

白蚁肠道微生物

对近年来白蚁肠道微生物方面的研究成果作一综述,主要强调白蚁肠道中存在的原生动物、发酵性细菌、固氮菌、螺旋体、同型产乙酸细菌、产甲烷细菌和硫酸盐还原菌对白蚁消化木质纤维素类食物有着重要的作用。     

Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult Monozygotic Twins

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Xenosiderophore Utilization Promotes Bacteroides thetaiotaomicron Resilience during Colitis

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Influence of diet on the structure and function of the bacterial hindgut community of crickets

The effect of diets varying in carbohydrate and protein content on the structure and function of the hindgut microbiota of crickets was evaluated by determining bacterial densities, fermentation activity, and guanine plus cytosine (G + C) profiles of the DNA extracted from the microbial hindgut community. DNA isolated from the gut community was fractionated and quantified according to G + C content as a comprehensive, coarse-level measure of the composition and structure of the community. The bacterial densities measured by direct counts were not significantly different among the four diets. The crickets were initially reared in the laboratory on cricket chow, which resulted in a hindgut community dominated by bacteria with a G + C content between 32% and 57%. Crickets shifted to an alfalfa diet showed a similar hindgut community G + C profile, although microbial populations with DNA between 35% and 45% G + C were more abundant in alfalfa- than chow-fed crickets. The apparent complexity of the gut community was reduced in crickets fed beet-pulp and protein-based diets compared to those fed chow and alfalfa, and was dominated by populations with a low percentage G + C content. Hindgut communities in crickets fed pulp and protein diets also showed a decrease in hydrogen and carbon dioxide production, suggesting that these diets affected the biochemical activity of the hindgut community. The protein-based diet resulted in a decrease in the rate of evolution of volatile fatty acids, while the ratio of butyrate production to acetate and propionate production was significantly higher in these crickets. Our results show the emergence of a new microbial community structure concomitant with changes in microbial biochemical activity due to shifts in the cricket's dietary regime.     

Exploring the bovine rumen bacterial community from birth to adulthood

The mammalian gut microbiota is essential in shaping many of its host''s functional attributes. One such microbiota resides in the bovine digestive tract in a compartment termed as the rumen. The rumen microbiota is necessary for the proper physiological development of the rumen and for the animal''s ability to digest and convert plant mass into food products, making it highly significant to humans. The establishment of this microbial population and the changes occurring with the host''s age are important for understanding this key microbial community. Despite its importance, little information about colonization of the microbial populations in newborn animals, and the gradual changes occurring thereafter, exists. Here, we characterized the overall bovine ruminal bacterial populations of five age groups, from 1-day-old calves to 2-year-old cows. We describe the changes occurring in the rumen ecosystem after birth, reflected by a decline in aerobic and facultative anaerobic taxa and an increase in anaerobic ones. Some rumen bacteria that are essential for mature rumen function could be detected as early as 1 day after birth, long before the rumen is active or even before ingestion of plant material occurs. The diversity and within-group similarity increased with age, suggesting a more diverse but homogeneous and specific mature community, compared with the more heterogeneous and less diverse primary community. In addition, a convergence toward a mature bacterial arrangement with age was observed. These findings have also been reported for human gut microbiota, suggesting that similar forces drive the establishment of gut microbiotas in these two distinct mammalian digestive systems.     

基于机器学习的肠道菌群数据建模与分析研究综述

人体肠道菌群与人类的健康和疾病存在密切关系,对肠道菌群的宏基因组数据进行建模和分析,在疾病预测及诊断相关领域科学研究和社会应用方面均具有重要意义。本文从大数据分析和机器学习的角度,对人体肠道菌群数据的建模、分析和预测算法的原理、过程以及典型研究应用实例进行综述,以期推动肠道菌群分析相关研究发展以及探索结合机器学习算法进行肠道菌群分析的有效方式,同时也为开发基于肠道菌群数据的新型诊疗手段提供借鉴,推动我国精准医疗事业发展。     

果蝇肠道干细胞增殖与分化机制及其研究进展

动物肠道经常接触微生物而引起免疫应答,持续感染将导致胃肠疾病的发生.大量文献报道了果蝇中肠是研究肠道干细胞稳态的理想模型.本文将对果蝇肠道干细胞增殖与分化机制进行简要归纳和总结,同时对该领域的研究前景进行展望,为研究果蝇肠道内稳态提供一定的理论基础.     

Dosing a synbiotic of human milk oligosaccharides and B. infantis leads to reversible engraftment in healthy adult microbiomes without antibiotics

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In situ estimates of gut evacuation and its dependence on temperature in five cyprinids

Gut evacuation and its dependence on the temperature in bream Abramis brama , silver bream Blicca bjoerkna , roach Rutilus rutilus , gibel Carassius aurtaus gibelio and carp Cyprinus carpio , held in mesh cages in Lake Balaton, was best fitted by an exponential model in 18 of 36 trials, while in 14 and four trials, a linear and a square-root model, respectively, gave a better fit. Adjusted r ² values, however, often did not differ markedly between the three models. The shape parameter, B , was 0.36 for carp and ranged from 0.81 to 1.24 for the other four cyprinids, according to the general evacuation model expanded with the temperature variable, and fitted to whole data sets. Relationships between the food evacuation rates obtained from the exponential models and the temperature were described by exponential functions for bream, silver bream, roach and gibel.