Diversity and composition of the bacterial community of Poyang Lake (China) as determined by 16S rRNA gene sequence analysis

Poyang Lake is the largest fresh water lake in China. In this study, the objective was to examine the diversity of bacterial community in this environment. The phylogenetic composition of bacterioplankton communities from two sites and two dates (northern and southern sub-basins in October 2006 and in May 2007, respectively) in the water column of Poyang Lake were investigated by partially sequencing cloned 16SrRNA genes. Moreover, restriction fragment length polymorphism (RFLP) was applied in the 16SrRNA gene clones. In total, four clone libraries were constructed and 347 clones were screened by RFLP, yielding 153 operational taxonomic units, which mainly belonged to the proteobacteria, Actinobacteria, Bacteroidetes, Cyanobacteria, Verrucomicrobia and Planctomycetes. Our results showed that Beta-proteobacteria was the most significant lineage, with dominant numbers of operational taxonomic units in the northern October 2006, southern October 2006 and May 2007 libraries. The highest bacterial diversity occurred in the library from the southern sub-basin in May 2007 and the lowest in the library from the northern sub-basin in May 2007. Horizontal and temporal differences associated with the concentration of total phosphorus, water temperature and pH suggested that the trophic state and the physicochemical properties of lake play key roles in sustaining bacterial community composition structure.     

Effects of production, sedimentation and taphonomic processes on the composition and size structure of sedimenting cladoceran remains in a large deep subalpine lake: paleo-ecological implications

Changes in the composition and size structure of cladoceran remains collected in sediment traps (ST) were compared at a monthly time-resolution to the changes in the cladoceran source communities in order to assess the effects of production, sedimentation and taphonomic processes on the composition, completeness of time series and size structure of cladoceran remains in a large deep monomictic subalpine lake. Cladoceran remains collected in the ST globally reflected seasonal changes in the composition of the source community for the dominant taxa (Daphnia sp., Eubosmina spp. and. D. brachyurum) but failed in capturing accurately the seasonal changes in the abundance of the least abundant species, B. longirostris. Using allometric relationships, the average body size of the organisms that produced the remains retrieved in the ST could be reconstructed. Although the cladoceran average body size estimated from trap remains was always smaller than that of the source communities, temporal changes in the average body size of the dominant taxa in the source community were captured by trap samples. Our results showed that, in this deep subalpine lake, cladoceran remains production, sedimentation and taphonomic processes within the water column did not alter the compositional fidelity of remains at seasonal and annual time scales for the dominant taxa. Results did not show any significant over-representation of Bosmina and subsequent under-representation of Daphnia in contrast to previous studies on small and flat lakes. Our results suggest that the frequently observed under-estimation of Daphnia in fossil assemblages could be a consequence of the mesh size used when processing sediment core samples rather than of varying magnitude of degradation processes between small or flat lakes and deep lakes. Finally, our results support the use of the size of cladoceran remains within paleo-ecological studies to assess past changes in the size structure of the source communities.     

What can resting egg banks tell about cladoceran diversity in a shallow subtropical lake?

Dormant stages (“resting eggs”) produced by cladocerans can persist for long periods of time in sediments and restore populations once the environmental conditions become favorable again. Lake Blanca, a subtropical shallow eutrophic lake, hosts a cladoceran community dominated by small-sized species. Previous studies on zooplankton resting eggs suggested that the cladoceran genera Daphnia and Simocephalus were present, but they had never been found before in water samples. In the present study, we compared a biweekly active community sampling with the resting egg bank (passive cladoceran community) from littoral and pelagic zones. Moreover, we tested the amount of samples required to have a representative reconstruction of the diversity in both compartments (water and sediment). Lake Blanca showed a relatively high cladoceran species richness (24) in the water column, with rapid temporal replacement. Several species were present in water samples during short temporal windows; therefore, to detect these species a strong sampling effort in terms of temporal frequency and spatial distribution was required. Contrary to our expectations, resting egg community showed a lower diversity than the active community; however, we demonstrated that the analysis of resting egg bank composition can help detect general community structure patterns.     

How important are trophic state,macrophyte and fish population effects on cladoceran community? A study in Lake Erhai

Environmental controls on cladoceran community structure in lake ecosystems are complex and may involve many environmental parameters including trophic state and fish populations. In Lake Erhai, a plateau lake located in southwest China, it was hypothesized that a combination of lake eutrophication and planktivorous fish introduction would increase the abundance of cladoceran, while also decreasing cladoceran size. To test this hypothesis, we examined temporal changes in cladoceran microfossils in the sediments of Lake Erhai over the past century. The influence of changing macrophyte coverage within the littoral region of the lake was also considered. Results demonstrated that cladoceran abundance (measured as flux of cladoceran fossils in the sediments) increased markedly accompanying eutrophication of the lake. In addition, there was a shift in the dominant cladoceran species from those species that prefer oligotrophic conditions to those that prefer mesotrophic and eutrophic conditions. A reduction in the ephippium length of Daphnia spp. was observed and attributed to the introduction of the planktivorous fish Neosalanx taihuensis. Our findings indicated that eutrophication and fish introduction were the main controls affecting cladoceran community structure during the recent decades, and predation by planktivorous fish had an important impact on Daphnia body size.     

Hydrologic and anthropogenic influences on aquatic macrophyte development in a large,shallow lake in China

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Lake depth rather than fish planktivory determines cladoceran community structure in Faroese lakes – evidence from contemporary data and sediments

1. This study describes the environmental conditions and cladoceran community structure of 29 Faroese lakes with special focus on elucidating the impact of fish planktivory. In addition, long‐term changes in biological structure of the Faroese Lake Heygsvatn are investigated. 2. Present‐day species richness and community structure of cladocerans were identified from pelagial snapshot samples and from samples of surface sediment (0–1 cm). Multivariate statistical methods were applied to explore cladoceran species distribution relative to measured environmental variables. For Lake Heygsvatn, lake development was inferred by cladoceran‐based paleolimnological investigations of a ¹⁴C‐dated sediment core covering the last ca 5700 years. 3. The 29 study lakes were overall shallow, small‐sized, oligotrophic and dominated by brown trout (Salmo trutta). Cladoceran species richness was overall higher in the surface sediment samples than in the snapshot samples. 4. Fish abundance was found to be of only minor importance in shaping cladoceran community and body size structure, presumably because of predominance of the less efficient zooplanktivore brown trout. 5. Canonical correspondence analysis showed maximum lake depth (Z_max) to be the only significant variable in explaining the sedimentary cladoceran species (18 cladoceran taxa, two pelagic, 16 benthic) distribution. Multivariate regression trees revealed benthic taxa to dominate in lakes with Z_max < 4.8 m and pelagic taxa to dominate when Z_max was > 4.8 m. 6. Predictive models to infer Z_max were developed using variance weighted‐averaging procedures. These were subsequently applied to subfossil cladoceran assemblages identified from a ¹⁴C‐dated sediment core from Lake Heygsvatn and showed inferred Z_max to correspond well to the present‐day lake depth. A recent increase in inferred Z_max may, however, be an artefact induced by, for instance, eutrophication.     

Interrelations between Microcystis and Cladocera in the highly Eutrophic Lake Kasumigaura,Japan

The zooplankton community in the highly eutrophic Lake Kasumigaura was investigated and its relation to a bloom of Microcystis was analyzed. The zooplankton community was dominated by small cladocerans, whose biomass and production became highest in summer, when Microcystis bloomed. The high cladoceran production is considered to depend on the production of colonial Microcystis, because the production of nannoplankton was apparently too low to ensure the cladoceran production. Microcystis cells were unsuitable as food for the cladocerans inhabiting Lake Kasumigaura, but became utilizable when decomposed. Decomposed Microcystis may be the main food for Cladocera in the lake in summer. High water temperatures occurring in summer probably promoted decomposition of the Microcystis, leading to increased production of the small cladocerans.     

Long‐term dynamics of a cladoceran community from an early stage of lake formation in Lake Fukami‐ike,Japan

An increase in nutrient levels due to eutrophication has considerable effects on lake ecosystems. Cladocerans are intermediate consumers in lake ecosystems; thus, they are influenced by both the bottom‐up and top‐down effects that occur as eutrophication progresses. The long‐term community succession of cladocerans and the effects cladocerans experience through the various eutrophication stages have rarely been investigated from the perspective of the early‐stage cladoceran community assemblage during lake formation. In our research, long‐term cladoceran community succession was examined via paleolimnological analysis in the currently eutrophic Lake Fukami‐ike, Japan. We measured the concentration of total phosphorus and phytoplankton pigments and counted cladoceran and other invertebrate subfossils in all layers of collected sediment cores, and then assessed changes in the factors controlling the cladoceran community over a 354‐year period from lake formation to the present. The cladoceran community consisted only of benthic taxa at the time of lake formation. When rapid eutrophication occurred and phytoplankton increased, the benthic community was replaced by a pelagic community. After further eutrophication, large Daphnia and high‐order consumers became established. The statistical analysis suggested that bottom‐up effects mainly controlled the cladoceran community in the lake''s early stages, and the importance of top‐down effects increased after eutrophication occurred. Total phosphorus and phytoplankton pigments had positive effects on pelagic Bosmina, leading to the replacement of the benthic cladoceran community by the pelagic one. In contrast, the taxa established posteutrophication were affected more by predators than by nutrient levels. A decrease in planktivorous fish possibly allowed large Daphnia to establish, and the subsequent increase in planktivorous fish reduced the body size of the cladoceran community.     

Patterns in the Distribution of Cladocerans (Crustacea: Branchiopoda) in Lakes Across a North–south Transect in Alaska, USA

The remains of cladocerans were examined from the surface sediments of 51 freshwater sites along a north–south transect spanning Alaska. We identified 27 cladoceran taxa from the sediments, consisting primarily of littoral chydorid species. Variations in cladoceran assemblages were related to measured physical and chemical variables using multivariate techniques. Redundancy analysis (RDA) indicated that lake depth, total phosphorus (TP), and altitude all had a significant influence in determining the composition of cladoceran assemblages. Cladoceran communities in tundra and forest-tundra lakes, which were relatively shallow and nutrient-poor, had relatively low abundances of pelagic Cladocera, and were primarily composed of several littoral chydorid species. Among pelagic cladoceran species, there was a distinct shift in dominance from the Bosminidae in lakes in the southern boreal forest region to Daphniidae in lakes in the northern boreal forest. Daphnia dominated lakes had significantly higher total phosphorus, specific conductivity, and calcium concentrations than lakes dominated by Eubosmina. Overall, the relative importance of physical and chemical factors in structuring cladocerans is similar to other previously studied regions, and suggests the Cladocera may be useful as ecological and paleoenvironmental indicators in this region.     

Zooplankton seasonal dynamics in a recently filled mine pit lake: the effect of non-indigenous <Emphasis Type="Italic">Daphnia</Emphasis> establishment

We examined the temporal and vertical dynamics of zooplankton in Weavers Lake, New Zealand, between October 2004 and October 2005, at a time when it was colonised by a non-indigenous Daphnia species. Zooplankton community composition changed during the study from one of rotifer dominance (e.g. Asplanchna, Polyarthra, Brachionus and Keratella species) to cladoceran (Daphnia dentifera) dominance. Temporal changes in zooplankton community composition were strongly associated with a gradual increase in lake water clarity, and were attributable to the highly efficient filter feeding of D. dentifera. The corresponding reduction in rotifer densities may have resulted from the superior competitive abilities of the newly established Daphnia. As Daphnia were rare inhabitants of New Zealand lakes before 1990, the arrival and rapid spread of the non-indigenous D. dentifera has lead to widespread changes in both water clarity and zooplankton community composition. An apparent lack of mixing in the lake was facilitated by the lake’s extremely small surface area:depth ratio. However, we conclude that physical features of the lake had minimal influence on water clarity relative to the invasion of D. dentifera.     

Using invertebrate remains and pigments in the sediment to infer changes in trophic structure after fish introduction in Lake Fogo: a crater lake in the Azores

Fish introduction may have marked effects on the trophic dynamics and ecological state of former fishless lakes, but due to scarcity of historical data this can seldom be documented. We used remains of cladoceran, chironomid and pigment assemblages in the sediment archive to unravel the effect of introduction of carp (Cyprinus carpio), rainbow trout (Oncorhynchus mykiss) and a cyprinid (Chondrostoma oligolepis) in Lake Fogo, the Azores (Portugal). The stratigraphical record showed two major shifts in community assemblage coinciding with the time of introduction of carp (AD ca. 1890) and trout (AD 1941), respectively. Carp introduction was followed by an abrupt and major decline in the abundance of chironomids, a shift in the cladoceran community from a benthic to a more pelagic dominated community, and Daphnia size was significantly reduced. Pigment assemblages also indicated a shift from a benthic to a pelagic dominated ecosystem, as cryptophytes became markedly more abundant at the expense of benthic diatoms. Trout introduction was followed by a return to a more benthic cladoceran and benthic algae (pigments) dominated state, which we attribute to trout predation on carp leading to improved water clarity. A steady increase in the abundance of pigments and cladoceran remains followed, suggesting enhanced productivity, which may be attributed to enhanced atmospheric nitrogen deposition and introduction of C. oligolepis. We conclude that fish introduction has profoundly altered the trophic dynamics and the relative importance of benthic and pelagic production in this species poor and natural fishless lake in the Azores, and likely in most others lakes at the archipelago islands as fish stocking has been a widespread practice.     

What can dry reservoir sediments in a semi-arid region in Brazil tell us about cladocera?

A study of dry sediments in a semi-arid reservoir in northeast Brazil was undertaken. Eleven quadrants were sampled along a transect in the reservoir. Sediments were collected and transferred to distilled water in the laboratory where they were subsequently filtered through a 50 m mesh filter. Ecloded cladocerans were identified. Several species hatched in the laboratory, and were compared with the cladoceran community collected before the reservoir had dried out. In previous years, only Moina minuta, Diaphanosoma spinulosumand Alonella hamulata were found in the lake, each on a different sampling date. In the laboratory, however, other species like Macrothrix sp., Leydigia ipojucae, Latonopsis australis and Ceriodaphnia cornuta f. rigaudi hatched. We observed that those quadrants, which were located in higher parts of the reservoir, and had been dry for 13 years, contained species that appeared only in these quadrants. Thus, the sediments show that independently of the species actively present in the water column, sediments store species in diapause stages: an observation that should not be overlooked, especially in biodiversity studies.     

Calcium content of littoral Cladocera in three softwater lakes of the Canadian Shield

Aqueous calcium (Ca) concentrations are declining in softwater lakes of the Canadian Shield largely because of decades of acid deposition and afforestation following timber harvesting. Populations of pelagic cladoceran taxa with high Ca requirements, especially Daphnia spp., are declining in response to reduced aqueous Ca availability. However, the Ca content, and thus the requirements of littoral cladoceran taxa are unknown; therefore, the potential vulnerability of this major component of lake ecosystems to ongoing regional Ca decline remains uncertain. Here, we identify the body Ca concentration of nine littoral cladoceran taxa collected from three lakes in the Muskoka-Haliburton region of Ontario, Canada. Ca content differed among taxonomic groups, ranging from 3.6 mg g⁻¹ for Acroperus harpae to 23.2 mg g⁻¹ for Disparalona spp. Perhaps surprisingly, some littoral microcrustacean taxa have Ca burdens comparable to the Ca-rich daphniids. Therefore, there may be differential responses to ongoing lake water Ca declines among taxa within littoral communities as has been observed among open-water taxa, with potential ecological repercussions for near-shore food webs.     

The Effect of Fish Introductions on the Diatom and Cladoceran Communities of Lake Opeongo,Ontario, Canada

Fish introductions are one of the most widespread anthropogenic perturbations to aquatic ecosystems. Paradoxically, the effects of these introductions on aquatic ecosystems are typically poorly documented. This project studied the effect of fish introductions on Lake Opeongo, an oligotrophic lake in Algonquin Provincial Park, Ontario, Canada (45° 42′ N, 78° 22′ W), using the remains of algae (diatoms) and zooplankton (cladocerans) preserved in the sediments. It was hypothesized that the introduction of cisco or lake herring (Coregonus artedii Lesueur) in 1948, which filled the underutilized pelagic forage fish niche, should have altered nutrient availability for phytoplankton. Prior to cisco introduction, the diatom community of Lake Opeongo reflected a relatively stable oligotrophic state established before European settlement, and consisted of the Cyclotella stelligera complex with subdominants Tabellaria flocculosa IIIp and the Aulacoseira distans complex. No marked changes occurred until ca. 1962 when the diatom community shifted to an assemblage with increased total phosphorus preferences, consisting of Asterionella formosa and lesser amounts of Cyclotella bodanica var lemanica, the C. stelligera complex, Fragilaria crotonensis and T. flocculosa IIIp. The dominant cladoceran Bosmina longirostris increased significantly in relative abundance since the introduction of cisco. The most likely cause of this shift was increased nutrient recycling and/or trophic level changes caused by human manipulation of the fish community of the lake.     

Cladocera in space and time: Analysis of lake sediments

Shells of Bosminidae and Chydoridae are quantitatively preserved in lake sediments. The chronological deposition of these remains provides the means for longterm observation of these Cladocera, both in terms of species and communities. Chydorid analysis, as based on subfossil assemblages, is an analysis of community and provides direct observation of community dynamics over extended periods of time. It has proved to be a valuable method to obtain information on the influence of environmental factors and time on community characteristics. Morphological variation inBosmina (Eubosmina) has been followed for some thousand years. This is of special interest for the evaluation of taxonomic rank (species, forms) if closely related taxa have co-existed. Bosmina successions, as well as shifts in the chydorid fauna, are related to environmental change. Thus, cladoceran analysis of lake sediments provides information on the developmental history of lakes and allows observation of the effects of longterm environmental changes, such as climatic changes and eutrophication.     

Spatial patterns and population dynamics of plant-associated microcrustacea (Cladocera) in an English shallow lake (Little Mere, Cheshire)

Little Mere (Cheshire) is a small (2.7 ha) and shallow (average depth 0.7 m) fertile lake in Cheshire, UK. Nymphaeids cover almost 40 % of its entire surface during the growing season (April to October) and practically all the rest is covered by a mixed community of submerged plants. The lake was intensively sampled for plant-associated Cladocera and zooplankters from April 1998-April 2000. Samples were collected at five sites across the lake, three of them located within lily beds, the other two over submerged plant beds of mixed composition. Specific sampling techniques were developed for floating lily leaves, petioles, submerged plants and water. Significant horizontal differences were identified for most cladoceran species, both open-water and plant-associated, for chydorid periphyton scrapers and for filter-feeders. Daphnia hyalina (L.) and Ceriodaphnia sp were significantly more abundant in lily beds than in more open water in both growing seasons, suggesting lily beds are an effective refuge against fish predation. Size-structure and egg-ratio data support this contention. Egg-ratio models were examined for Daphnia hyalina and Simocephalus vetulus (O.F. Müller), a plant-associated cladoceran. The fertility of S. vetulus in lily beds was generally high throughout growing seasons. The construction of egg-ratio models for this species was hampered by their generally very patchy distributions.     

星云湖硅藻群落响应近现代人类活动与气候变化的过程

随着人类活动的增强与全球气候变暖的持续,近年来云南湖泊的生态系统功能持续退化,而目前对云南湖泊生态系统的研究还主要集中于单一环境压力的生态效应。以星云湖为研究对象,通过沉积物记录与现代监测资料,识别在湖泊富营养化、气候变化以及人类强烈干扰下硅藻群落结构响应的过程,并甄别驱动群落变化的主要环境压力及其强度。结果显示随着湖泊生产力水平(如沉积物叶绿素a浓度)的增加,硅藻物种组成发生了明显的变化,主成分分析表明了水体富营养化是驱动群落变化的主要环境因子(r=-0.63,P0.001)。简约模型与方差分解的结果表明近200年来(钻孔长度38cm),湖泊营养水平和水动力是驱动星云湖硅藻群落变化的主要环境因子,分别解释了群落变化的18.8%和2.9%;而1951年以后,湖泊营养水平和温度分别解释了硅藻群落结构变化的31.4%和26.8%。研究结果表明了硅藻群落长期变化的主控因子是湖泊营养水平,而人类活动及气候变化等可以通过改变湖泊水动力及湖水温度来驱动硅藻群落的演替,同时抚仙湖-星云湖的连通性也对硅藻群落的演替产生了一定影响。     

On the diversity of the Cladocera in the tropics

The mythical concept of an impoverished tropical cladoceran fauna is refuted. On a planetary scale, around half of the cladoceran species presently known occur exclusively in the tropics-subtropics, often with considerable restriction to particular geographical subzones. On a regional (political) scale, the situation is often unclear because of the continued fragmentary nature of studies, and because political units are not a good basis for biogeographical comparisons. At the finest level of resolution (lake-perlake comparisons), there appears to be an upper limit of c. 50 cladoceran species per individual lake. No significant difference between lakes in the temperate zone and in the tropics could be established here. Daphnia is largely absent from the tropics, but is replaced by more Sidids, Moinids, and Bosminids, such that the average cladoceran community in the limnetic zone of a tropical lake is not characterized by less species but rather by lower population densities. This, in turn, is considered a consequence of higher prevalent predation levels in the tropics.     

Inferring a single variable from an assemblage with multiple controls: getting into deep water with cladoceran lake-depth transfer functions

Transfer functions have proved very useful for quantitative reconstruction of past environments. Inferring values of a single parameter based on changes in a community with multiple controls may result in unreliable inferences. To assess this unreliability cladoceran surface sediment assemblages from 53 lakes in Greenland, which have substantial variations in lake depth and fish abundance, both of which shape cladoceran communities, were analysed in this study. Redundancy analysis (RDA) revealed that maximum lake depth and either fish abundance or fish presence/absence exerted substantial and significant control on the cladoceran assemblage. Partial RDA showed that maximum lake depth and fish abundance uniquely explained 7.9 and 5.1%, respectively, with 5.3% variance being shared. A transfer function to infer lake depth from cladoceran sub-fossils was constructed and performed moderately well [coefficient of determination (r ²) = 0.65; root mean square error of prediction (RMSEP) = 0.32 log maximum depth] on the full dataset. When outliers, defined by a bootstrapped prediction error greater than 25% of the total depth gradient, were excluded, the model performed well (r ² = 0.74, RMSEP = 0.25 log maximum depth). The improved transfer function was then applied to sedimentary assemblage from a sediment core from Lake Bores?, in North-eastern Greenland, covering 9,000 years. A large increase in lake depth was inferred around 6250 bp. Whilst the climate was wetter at that time, the inferred changes in depth likely reflect the alteration of the food web, which resulted from the arrival of fish in the lake. This highlights the risks of using single-variable inference models for hindcasting change in lake physical and/or food web structure when there are other important co-variables.     

The effects of selective fish predation on the horizontal distribution of pelagic Cladocera in a southern French reservoir

A four-year study showed a clear seasonal succession of species within the cladoceran community of the large, oligotrophic Sainte-Croix reservoir (S.E. France). Diaphanosoma brachyurum and Ceriodaphnia pulchella were strictly limited to the warm stratified period (July to October), whereas Bosmina longirostris and Bosmina coregoni were dominant during spring and autumn. Daphnia longispina was the only species to occur throughout the year with higher densities in spring.In spring and late autumn, the discharge of the inflowing river Verdon was high and the abundance of all species showed a gradient over the whole lake with lower densities close to the inflow. During the stratified period, water inflow was very low and species showed different patterns. Densities of the small form Ceriodaphnia pulchella were similar all along the long axis of the lake, whereas Daphnia densities were significantly higher near the dam. The distribution pattern of Diaphanosoma, an intermediate-sized species, showed similar trends to that of Daphnia. The only planktivorous fish in the pelagic zone, the bleak (Alburnus alburnus), fed mostly on large-bodied species (> 1.0 mm) and was more abundant close to the inflow current. A comparison between the length frequency distributions of cladocera upstream and downstream provided a clear demonstration of the effects of size-selective predation on prey populations. Finally, the interactions between spatial heterogeneity and long-term development of the zooplankton community and the indirect effects of predation are discussed.