What's in a name? The case of cyanobacteria

A redefinition of the cyanobacterial lineage has been proposed based on phylogenomic analysis of distantly related nonphototrophic lineages. We define Cyanobacteria here as “Organisms in the domain bacteria able to carry out oxygenic photosynthesis with water as an electron donor and to reduce carbon dioxide as a source of carbon, or those secondarily evolved from such organisms.”     

Behavior of lignin in a dimethylsulfoxide—water mixture

The hydrodynamic behavior of lignin in a dimethylsulfoxide-water mixture have been studied at the temperature range of 20–60°C and at a water content from 0 to 30%. The rise of temperature was shown to deteriorate the quality of the solvent; i.e., the system under investigation belongs to systems with a lower critical solution temperature. The dimension of lignin particles in the mixed solvent decreases with an increasing proportion of water in the system.     

The faint promise of a distant market: a survey of Belém's trade in non-timber forest products

Increased trade in non-timber forest products (NTFPs) has been promoted as one possible means to slow tropical deforestation by increasing the economic value of intact forest. A market survey of NTFPs occurring in the Capim River basin in eastern Amazonia, Brazil demonstrated that the reality for many smallholder communities in frontier and remote regions includes chronic transportation difficulties, high variability in fruit production, perishable products and lack of market expertise. In some communities, declining abundance of NTFPs due to logging and fire has resulted in a lack of forest products to even meet subsistence needs. In areas close to cities where transportation is assured and where forest clearing has eroded the natural occurrence of some valuable native NTFPs, smallholders who manage and successfully market native fruit and medicinal species are overcoming these obstacles. In frontier regions undergoing rapid transformation, however, decline in locally used and regionally marketed NTFPs currently pose detrimental consequences for communities. Findings suggest that an overemphasis on NTFP marketing has diverted attention from local livelihood, resource access and subsistence issues.     

The influence of substratum age on patterns of protozoan assemblages in freshwater Aufwuchs — a case study

The sulfate reduction rate was measured for almost four years in the profundal sediments of Lake Kizaki, a mesotrophic lake in central Japan. The rate was generally highest in the surface layer and decreased with depth. Seasonally, sulfate reduction tended to be high in spring and summer, and then to decrease until the end of stratification (December) in spite of a constant in situ temperature of around 6 °C, although fluctuations were found in every year. The rate also fluctuated greatly according to year. The maximum rate of sulfate reduction was 0.33 mmol m⁻² d⁻¹ in May, 1990, and the minimum was 0.004 mmol m⁻² d⁻¹ in March, 1993. These relatively low rates, compared with those reported for freshwater sediments, seem to be due to low concentrations of sulfate in the sediments (5–23 μmol l⁻¹ in the surface layer). The rate was highly correlated with the concentration of sulfate in the sediments. The addition of sulfate stimulated sulfate reduction in all sediment samples tested, but adding lactate did not. Therefore, sulfate reduction should be limited mainly by the supply of sulfate. Measurements of sulfate reduction rates at different concentrations of added sulfate revealed a low concentration of half-saturation constant as low as 12 μmol l⁻¹.     

Ongoing succession of biological soil crusts increases water repellency — a case study on Arenosols in Sekule, Slovakia

After soil surface disturbances biological soil crusts (BSC) cover rapidly the topmost soil millimeters. Depending on BSC age, development of soil water repellency, water infiltration and soil surface stability are influenced by this thin surface sealing. Within this study disturbed, early- mid- and late successional stages of BSC development were examined along a recovery transect. The results show an increase in water repellency and a decrease in water sorptivity and conductivity with ongoing BSC succession. Penetration resistance data shows very stable thin surface protection by cyanobacteria in early successional BSC that is non-repellent. Later successional stages show increased water repellency and lower water conductivity. We conclude that BSC development induces changes in surface structure and wettability. The soil surface wettability is strongly linked to the BSC community composition.     

Global flow equations for membrane transport from local equations of motion—II. The case of a single nonelectrolyte solute plus water

The global flow equations of nonequilibrium thermodynamics for a single nonelectrolyte solute and water passing through a membrane are obtained by solving the local equations of motion. The method follows that developed for the general,n-solute case in the previous paper (Mikulecky, 1978). It is easily seen in this simple case that the passage from local interactions, formulated as position dependent frictional interactions in the equations of motion, to ghe global result involves a loss of any simple way of identifying particulars about local information. Two particular cases are analyzed in further detail: the case of no interaction within the pore and the case of constant interaction for both solute and solvent across the pore. In the former case, Onsager reciprocity survives in the global result if a self-consistent definition of the partial viscosity coefficients is used, while in the latter case, reciprocity is lost. Since, in many biologically interesting cases, the presence of interaction of the type considered here is likely to occur, the reciprocity condition should not automatically be assumed to hold.     

The effects of mechanically-induced stress in plants — a review

Mechanically-induced stress (MIS) occurs naturally in plants as the aerial parts are moved, usually by wind, but also by such agents as rain and animals. It can be induced indoors by various actions such as rubbing or bending the stem or shaking or brushing the entire shoot. The most noticeable effect of MIS is a reduction in stem, leaf or petiole length invariably resulting in plants which are smaller and more compact than unstressed controls. However, the response of other variables can often differ between species and there may be either increases or decreases in stem or petiole diameter, root: shoot weight ratio, chlorophyll content or drought resistance. Why species should differ in this way, and what is the endogenous control mechanism for MIS responses, are inanswered questions. Ethylene, which increases as a result of MIS in several species may cause some MIS responses such as increased stem diameter, epinasty or a change in sex expression. However, evidence suggests that MIS retardation of extension growth may equally be due to lower or supraoptimal auxin levels or lower gibberellin levels.The uses in the field of the growth promoter gibberellin or the growth retardant chlormequat chloride (CCC) appear to be examples of respectively reversing or stimulating MIS growth response. MIS may be applied indoors if short compact plants are needed, either for aesthetic purposes as with floral crops, or if hardier and more manageable plants are needed, such as seedlings for transplanting in the field. Much more research is needed to estimate the importance of MIS in the field and to assess how such knowledge may be used to improve crop yield.     

The conformational states of Mg·ATP in water

The conformational equilibria of Mg·ATP in solution is studied using molecular dynamics (MD) augmented with umbrella sampling methods. Free energy comparisons show that the Mg²⁺ ion is equally likely to coordinate the oxygens of the two end phosphates, or of all three phosphates. The MD trajectories reveal two major degrees of freedom of the Mg·ATP molecule in solution, and we compute the free energy as a function of these variables, and determine its elastic properties. Comparing the free energy function with several crystallographic structures of ATP analogs, we find that the crystal structures correspond to states where ATP would be elastically strained. The average water density around Mg·ATP is investigated to show the average number of hydrogen bonds and the hydrophobicity.     

Ordination or typology — The search for a stable classification of running water communities

Data on chironomid communities from 42 running water sites in Europe are analyzed by DCA and TWINSPAN methods. The sites are well separated in mountain or northern sites and lowland sites. The DCA method appears robust with respect to different levels in identification of the material. Typological classifications seem more stable and better suited for partial modifications and extensions.     

The partitioning of water uptake between growth forms in a Neotropical savanna: do herbs exploit a third water source niche?

In addition to trees and grasses, the savannas of central Brazil are characterised by a diverse herbaceous dicot flora. Here we tested whether the coexistence of a highly diversified assemblage of species resulted in stratification or strong overlap in the use of soil water resources. We measured oxygen and hydrogen isotope ratios of stem water from herbs, grasses and trees growing side by side, as well as the isotopic composition of water in soil profile, groundwater and rainfall, and predawn (Ψ_pd) and midday (Ψ_md) leaf water potentials. We used a stable isotope mixing model to estimate vertical partitioning of soil water by the three growth forms. Grasses relied on shallow soil water (5–50 cm) and were strongly anisohydric. Ψ_pd and Ψ_md decreased significantly from the wet to the dry season. Trees extracted water from deeper regions of the soil profile (60–120 cm) and were isohydric. Ψ_pd and Ψ_md did not change from the wet to the dry season. Herbs overlapped with grasses in patterns of water extraction in the dry season (between 10 and 40 cm), but they took up water at soil depths intermediate (70–100 cm) to those of trees and grasses during the wet season. They showed seasonal changes in Ψ_pd but not in Ψ_md. We conclude that vertical partitioning of soil water may have contributed to coexistence of these three growth forms and resulted in a more complex pattern of soil water extraction than the two‐compartment model of soil water uptake currently used to explain the structure and function of tropical savanna ecosystems.     

Containing political instability in a poly‐ethnic society: The case of Mauritius

In a continent whose political record has been largely marred by almost three decades of post‐independence political turmoil verging on genocidal proportions, the small state of Mauritius has devised a sociopolitical system that has largely succeeded in containing some of the worst excesses of bloody political confrontation usually associated with poly‐ethnic societies, for example, the Nigerian Civil War of the 1960s; the Tutsi/Hutu conflict in Burundi in 1988–89, and so on. In this article it is argued that Mauritius has devised and maintained a three‐pronged strategy to safeguard political stability, namely: (1) the adoption of constitutional safeguards to accommodate ethnic divisions; (2) a spoils system of (ethnic) parliamentary representation designed to ensure that no section of the population is alienated, thereby respiting in the politicization of ethnic divisions; (3) a ‘national patronage’ system through which massive social welfare spending has been maintained since independence. This has functioned to dampen the possibility of political violence nourished by general poverty and the resultant alienation. Finally, the commitment of the various ruling coalitions to the parliamentary process has had the effect of impelling the major opposition parties to seek to gain power through peaceful constitutional means rather than through violent political confrontation.     

Chloroform in runoff water—a two-year study in a small catchment in Southeast Sweden

Chloroform concentrations were observed and input and output fluxes estimated over a 2-yr period in a small coniferous catchment (0.22 km²) in southeast Sweden. Water discharge was measured daily, and runoff water was sampled bi-weekly for chloroform analysis. An approximate chloroform budget was calculated, which indicated that the annual output of 6 μg m⁻² yr⁻¹ was approximately six times higher than the input, inferring an internal source of chloroform in the catchment. To the best of our knowledge, neither flux estimates nor mass balances have previously been made for chloroform on a catchment scale, nor have data regarding natural runoff variation with time been gathered. Concentrations of chloroform in runoff were found to be generally high during wet periods, such as spring, but also peaked during summer rain events. The observed pattern suggests that chloroform is formed in surface soil layers and transported to the outlet under high-flow conditions and during dry-period rain events; it is lost through degradation or evaporation during drier periods due to longer soil water residence times. The data suggest that the variation among replicates increases with concentration; this emphasizes the need to know what the degree of on-site variation is, so one can collect a sufficient number of replicates to permit detection of spatial or temporal changes.     

What is a category? The case of rough-and-tumble play

The intent of this paper is to outline a process by which we redefined an ambiguous behavioral category, rough-and-tumble play (R&T), using ethological and ethnographic methods (i.e., factor analyses, motivational/functional analyses, and interviews). Results suggest that sociometrically rejected and popular elementary school children have different concepts of R&T. For the former group, R&T and aggression seem to be interrelated and serve similar functions, while for the latter group R&T is a playful, social affiliative category. Interview results suggest that a cognitive processing difference between the groups may be at the root of this difference.     

The gelling of κ-carrageenan in light and heavy water

Gels of κ-carrageenan were prepared in H₂O and D₂O. Rheological measurements revealed that in heavy water the elastic modulus is substantially higher. From the rheological view point, this result indicates the formation of a higher number of physical-crosslinking points in the structure of the gel. These crosslinking points are mainly associated with the aggregation of the double-helix of the κ-carrageenan, which is enhanced in D₂O. The thermal stability of the gels in both solvents (relative to the sol-gel transition) was also investigated by using polarimetric measurements (to measure the relative fraction of helix-coil) and micro-differential scanning calorimetry (micro-DSC). The results obtained using these techniques are very consistent and allow us to propose a model to explain the differences for the gels formed in light and heavy water based on the degree of double-helix aggregation.     

The role of protein–solvent hydrogen bond dynamics in the structural relaxation of a protein in glycerol versus water

We used MD simulations to investigate the dependence of the dynamics of a soluble protein, RNase A, on temperature and solvent environment. Consistent with neutron scattering data, the simulations predict that the protein undergoes a dynamical transition in both glycerol and aqueous solutions that is absent in the dry protein. The temperature of the transition is higher, while the rate of increase with temperature of the amplitudes of motion on the 100 ps timescale is lower, in glycerol versus water. Analysis of the dynamics of hydrogen bonds revealed that the protein dynamical transition is connected to the relaxation of the protein-solvent hydrogen bond network, which, in turn, is associated with solvent translational diffusion. Thus, it appears that the role of solvent dynamics in affecting the protein dynamical transition is qualitatively similar in water and glycerol.