Anadromy and heterogenous population of a tropical shad Tenualosa ilisha in Malaysia,as revealed by otolith microchemistry and molecular evidence

Tenualosa ilisha was found recently in the Perak River in western Peninsular Malaysia. Molecular phylogenetic and haplotype network analyses suggest that T. ilisha has two genetically distinct populations/groups: (i) Peninsular Malaysia (Malaysia population), and (ii) Peninsular Malaysia, Thailand, India and Bangladesh (Indian Ocean population). The results also suggest that the T ilisha population in Peninsular Malaysia is genetically heterogeneous with a typical anadromous migration pattern.     

Phylogeographic Pattern of the Striped Snakehead,Channa striata in Sundaland: Ancient River Connectivity,Geographical and Anthropogenic Singnatures

A phylogeographic study of an economically important freshwater fish, the striped snakehead, Channa striata in Sundaland was carried out using data from mtDNA ND5 gene target to elucidate genetic patterning. Templates obtained from a total of 280 individuals representing 24 sampling sites revealed 27 putative haplotypes. Three distinct genetic lineages were apparent; 1)northwest Peninsular Malaysia, 2)southern Peninsular, east Peninsular, Sumatra and SW (western Sarawak) and 3) central west Peninsular and Malaysian Borneo (except SW). Genetic structuring between lineages showed a significant signature of natural geographical barriers that have been acting as effective dividers between these populations. However, genetic propinquity between the SW and southern Peninsular and east Peninsular Malaysia populations was taken as evidence of ancient river connectivity between these regions during the Pleistocene epoch. Alternatively, close genetic relationship between central west Peninsular Malaysia and Malaysian Borneo populations implied anthropogenic activities. Further, haplotype sharing between the east Peninsular Malaysia and Sumatra populations revealed extraordinary migration ability of C. striata (>500 km) through ancient connectivity. These results provide interesting insights into the historical and contemporary landscape arrangement in shaping genetic patterns of freshwater species in Sundaland.     

First discovery of Pleistocene orangutan (Pongo sp.) fossils in Peninsular Malaysia: Biogeographic and paleoenvironmental implications

Nine isolated fossil Pongo teeth from two cave sites in Peninsular Malaysia are reported. These are the first fossil Pongo specimens recorded in Peninsular Malaysia and represent significant southward extensions of the ancient Southeast Asian continental range of fossil Pongo during two key periods of the Quaternary. These new records from Peninsular Malaysia show that ancestral Pongo successfully passed the major biogeographical divide between mainland continental Southeast Asia and the Sunda subregion before 500 ka (thousand years ago).     

To lump,to split or to maintain? Molecular taxonomy of the spotted barb Barbodes binotatus (Cyprinidae) and closely related species in Peninsular Malaysia

The taxonomic status of the Southeast Asian spotted barb, Barbodes binotatus (Teleostei: Cyprinidae), has puzzled researchers because of large but inconsistent geographic variation of its body melanin marking pattern. In this study, the authors appraise the differentiation of B. binotatus and two closely related species, Barbodes rhombeus and saddle barb, Barbodes banksi, in Peninsular Malaysia using mitochondrial and nuclear markers. The results of this study reveal that the Peninsular Malaysia populations of each of the three species form largely reciprocal monophyletic lineages that differ from each other by a minimum of 2.3% p-genetic distance using COI gene. Nonetheless, specimens of B. binotatus in Peninsular Malaysia are only distantly related to specimens of B. binotatus in Java (type locality). The monophyly of B. banksi is not refuted although specimens of Peninsular Malaysia are genetically distinct from those of Sarawak (type locality). The authors discuss alternative hypotheses whether each of these three valid species is a single species or each of the main five genetic lineages revealed in this study represents a distinct species. Preliminary investigations reveal a mito-nuclear discordance at one locality in Peninsular Malaysia where B. binotatus and B. banksi co-occur. Further studies should inform on the extent of reproductive porousness between these two lineages and others.     

The genus Goniothalamus (Annonaceae) in Sumatra

A comprehensive taxonomic revision of the species of Goniothalamus (Blume) Hook. f. & Thomson (Annonaceae) occurring in Sumatra and adjacent islands is presented for the first time. Fourteen species are recognized, including six endemics that are described as new to science ( G. acehensis, G. alatus, G. dewildei, G. loerzingii, G. longistaminus and G. miquelianus ). In addition, two species are newly recorded from Sumatra, viz. G. parallelivenius Ridl. (previously reported from Borneo), and G. wrayi King (previously reported from Peninsular Malaysia). The extensive nomenclatural confusion regarding the application of the names G. costulatus Miq. and G. opacus Bakh. f. is clarified: the names are shown to be synonymous, with the former having nomenclatural priority. The utility of specific taxonomic characters are also discussed, with particular emphasis on petal indumentum, staminal connective shape, ovary indumentum, stigma shape, monocarp size and shape, and seed indumentum. Biogeographical relationships in the genus are discussed, and the significance of the Barisan mountain range and the Quaternary volcanic tuffs around Lake Toba are highlighted as potential ecological barriers limiting dispersal.  © 2002 The Linnean Society of London, Botanical Journal of the Linnean Society , 2002, 139 , 225–254.     

Diversity and conservation of blackwater fishes in Peninsular Malaysia,particularly in the North Selangor peat swamp forest

One of the most extreme freshwater habitats in Peninsular Malaysia is the peat swamp forest, with dark-coloured and highly acidic waters. Surprisingly, little is known about blackwater fishes in Peninsular Malaysia. Until 1968, only 26 fish species were known from blackwaters throughout Peninsular Malaysia, of which only one can be regarded as stenotopic. A recent intensive survey of part of the North Selangor peat swamp forest yielded 47 species, of which 14 are probably stenotopic taxa. These include four undescribed species and several new records for western Peninsular Malaysia. These discoveries are significant in that they include the family Chaudhuriidae which until 1985, was not reported from Sundaic Southeast Asia, and the rare genus Encheloclarias which had not been encountered for over 50 years. The rapid rate of destruction of the peat swamp forest owing to development, forestry and agricultural activities must be halted or slowed significantly to enable the proper zoological surveys and studies to be conducted. Conservation plans and environmental impact assessments based on inadequate sampling and knowledge of species present is acutely dangerous. There are no longer substantial undisturbed blackwater peat swamp forests left in most of Peninsular Malaysia. Conservation of the remaining blackwater biotopes is critically important if extinction of many species, here regarded as economically valuable renewable resources, is to be prevented.     

Hoya somadeeae sp. nov. (Apocynaceae,Asclepiadoideae) Thailand and lectotypification of Hoya wrayi

A new species from evergreen montane forests of Thailand, Hoya somadeeae Rodda & Simonsson is here described and illustrated. The new species may be superficially confused with the Peninsular Malaysia endemic H. wrayi King & Gamble, but is clearly separated from it by the very elongated peduncles, up to 20 cm long, the revolute corollas, and outer processes of corona lobes with a membranaceous basal appendage. Morphological affinities between the new species and other Hoya species from Thailand and neighbouring Myanmar and Peninsular Malaysia are discussed.     

First Record of Batrachochytrium dendrobatidis Infecting Four Frog Families from Peninsular Malaysia

The fungal pathogen Batrachochytrium dendrobatidis (Bd) infects amphibians on every continent where they occur and is linked to the decline of over 200 amphibian species worldwide. At present, only three published Bd surveys exist for mainland Asia, and Bd has been detected in South Korea alone. In this article, we report the first survey for Bd in Peninsular Malaysia. We swabbed 127 individuals from the six amphibian families that occur on Peninsular Malaysia, including two orders, 27 genera, and 47 species. We detected Bd on 10 out of 127 individuals from four of five states and five of 11 localities, placing the 95% confidence interval for overall prevalence at 4–14%. We detected no variation in Bd prevalence among regions, elevations, or taxonomic groups. The infection intensity ranged from 1 to 157,000 genome equivalents. The presence of Bd infections in native species without clinical signs of disease suggests that Bd may be endemic to the region. Alternately, Bd may have been introduced from non-native amphibians because of the substantial amphibian food trade in Peninsular Malaysia. Under both scenarios, management efforts should be implemented to limit the spread of non-native Bd and protect the tremendous amphibian diversity in Peninsular Malaysia.     

Conservation of some rare and endangered plants from Peninsular Malaysia

Malaysia has approximately 15,000 species of vascular plants. Its flora is distributed between two major geographical regions; Peninsular Malaysia on mainland Asia and the states of Sabah and Sarawak on the island of Borneo. Peninsular Malaysia has over 8,300 plant species and Sabah and Sarawak in a recent estimate have about 12,000 species. Total species endemism for Peninsular Malaysia is about 30%; its tree endemism is 26.3%. For Sabah and Sarawak, the endemism level is higher, recently revised figures gave a tree species endemism of 42.1%. Malaysia has recently published its national strategy for plant conservation, which now forms the basis of conservation activities for the country. Since 2004, we have been running a project entitled “Conservation Monitoring of Rare and Threatened Plants of Peninsular Malaysia”, in which conservation status assessment is scored for a number of families. Results of the assessment of 458 taxa included 46.1% in some threat category. Detailed conservation studies are in progress for 33 species of threatened plants. Initial work on these species include spatial distribution studies at regional level based on herbarium records, and at a more local level, population studies to determine demography of populations. Regular phenological observations were also made for many of the species.     

Ranging behaviour,activity, habitat use,and morphology of the Malay civet (Viverra tangalunga) on Peninsular Malaysia and comparison with studies on Borneo and Sulawesi

The Malay civet (Viverra tangalunga) is found throughout Southeast Asia, but there have been very few studies on its natural history and ecology. We present here the results from the first radio telemetry study of this species on Peninsular Malaysia and compared our findings to similar studies on Borneo and Sulawesi. From August 2004 to August 2006, we captured 11 Malay civets in Krau Wildlife Reserve and radio-tracked seven adults (four males and three females). The mean weight of males (6.6 kg) was significantly higher than females (5.8 kg). Both sexes on Peninsular Malaysia were larger than their counterparts on Borneo and Sulawesi. There was no significant difference between the mean sizes of male and female home ranges on Peninsular Malaysia; the mean home range size for both sexes was 143 ha (95% MCP), which was larger than the mean range size recorded on Borneo and Sulawesi. We found that the Malay civet is a solitary, territorial species on Peninsular Malaysia: mean range overlap was 15% for males and 0% for females, and the home range of each male overlapped one or two females. Malay civets were mainly nocturnal, with some periods of rest during the night; daytime rest sites were within dense ground cover. Lowland forest is an essential habitat for this species; although Malay civets were sometimes found in plantations, they did not venture far from forested habitat.     

Theloderma licin McLeod and Ahmad, 2007 （Lissamphibia： Anura： Rhacophoridae）, a New Frog Record for Borneo

A new record of the rhacophorid frog, Theloderma licin is reported from Gunung Serambu, in the Bau region of western Sarawak, East Malaysia, which comprises the first published record of the species from the Sundaic island of Borneo. The species was previously known from the Malay Peninsula （southern Peninsular Thailand and Peninsular Malaysia）. Species of Theloderma are widespread in mainland and insular Southeast Asia, their arboreal habits perhaps contributing to our perception of rarity.     

Population affinities of the asiatic cobra (Naja naja) species complex in south-east Asia: reliability and random resampling

The population systematics of the cobras of the genus Naja in southern Thailand, Malaysia and Indonesia are investigated, using multivariate analysis of a large number of morphological characters. These populations are found to constitute three distinct groups: a northern form, which occurs in Thailand and northern Peninsular Malaysia; an equatorial form, which occurs in southern Thailand, Peninsular Malaysia, Sumatra and Borneo; and a southern form, which occurs on Java and the Lesser Sunda Islands. The first two forms are sympatric in northern Peninsular Malaysia and southern Thailand, and therefore constitute separate species. This is of importance for the treatment of snakebite in the region. The distribution of the three forms can be related both to present ecological conditions and to Pleistocene geological and climatic events. The reliability of the results is demonstrated by the relationship between character number and congruence of patterns of geographic variation, investigated by random resampling. The pattern of geographic variation within two of the three main forms is investigated and related to current ecological conditions and Pleistocene events.     

Trio under threat: can we secure the future of rhinos,elephants and tigers in Malaysia?

Three of Malaysia’s endangered large mammal species are experiencing contrasting futures. Populations of the Sumatran rhino (Dicerorhinus sumatrensis) have dwindled to critically low numbers in Peninsular Malaysia (current estimates need to be revised) and the state of Sabah (less than 40 individuals estimated). In the latter region, a bold intervention involving the translocation of isolated rhinos is being developed to concentrate them into a protected area to improve reproduction success rates. For the Asian elephant (Elephas maximus), recently established baselines for Peninsular Malaysia (0.09 elephants/km² estimated from one site) and Sabah (between 0.56 and 2.15 elephants/km² estimated from four sites) seem to indicate globally significant populations based on dung count surveys. Similar surveys are required to monitor elephant population trends at these sites and to determine baselines elsewhere. The population status of the Malayan tiger (Panthera tigris jacksoni) in Peninsular Malaysia, however, remains uncertain as only a couple of scientifically defensible camera-trapping surveys (1.66 and 2.59 tigers/100 km² estimated from two sites) have been conducted to date. As conservation resources are limited, it may be prudent to focus tiger monitoring and protection efforts in priority areas identified by the National Tiger Action Plan for Malaysia. Apart from reviewing the conservation status of rhinos, elephants and tigers and threats facing them, we highlight existing and novel conservation initiatives, policies and frameworks that can help secure the long-term future of these iconic species in Malaysia.     

Artabotrys byrsophyllus and A. tipuliferus spp. nov. (Annonaceae) from Peninsular Malaysia and Thailand

Two new species of Artabotrys (Annonaceae) from Peninsular Malaysia and Thailand are described. Conservation assessments for the two new species are made.     

A new acroeimerian (Apicomplexa: Eimeriidae) in spotted house gecko,Gekko monarchus (Schlegel) (Sauria: Gekkonidae) from Peninsular Malaysia

Systematic Parasitology - A new species of Acroeimeria Paperna & Landsberg, 1989 is described from the spotted house gecko, Gekko monarchus (Schlegel) from Peninsular Malaysia. Oöcysts...     

The first description of population density and habitat use of the mainland clouded leopard Neofelis nebulosa within a logged-primary forest in South East Asia

The mainland clouded leopard (Neofelis nebulosa) is classified as vulnerable under the IUCN Red List, meaning that it faces a high risk of extinction in the wild. However, hardly any ecological research has been published on this species apart from several radiotelemetry studies in Thailand and Nepal, and one camera-trapping study in India. Here we present findings on the clouded leopard from a camera-trapping study conducted in Temengor forest reserve (a logged-over forest) and Royal Belum State Park (a primary forest) within Peninsular Malaysia. Using the spatially-explicit capture-recapture method, the density from Temengor forest reserve and Royal Belum State Park was estimated at 3.46 ± SE 1.00 and 1.83 ± SE 0.61, respectively. Clouded leopard habitat use was found to be highly influenced by the availability of small and medium prey species and therefore intrinsically highlights the potential conservation importance of species such as pig-tailed macaques, porcupine, mouse deer and small carnivores. These findings provide the first estimates of density and habitat use of this species in a logged-primary forest from both Peninsular Malaysia and South East Asia. Our study provides important baseline information on clouded leopards and contributes to filling up the knowledge gap that exists in understanding the population ecology of this species, not only within Peninsular Malaysia, but also on a regional level.     

From stowaways to karst‐aways: unloading the Peninsular Malaysia endemic Polyalthia brunneifolia (Annonaceae)

Detailed examination of specimens collected from limestone outcrops in Peninsular Malaysia and previously included in Polyalthia brunneifolia shows that they do not belong in this species. Three new species are described to accommodate these collections: Polyalthia chinii I.M.Turner & Utteridge from Bukit Serdam, Raub, Pahang; P. guabatuensis I.M.Turner & Utteridge from Batu Caves, Selangor, and P. guamusangensis I.M.Turner & Utteridge from Gua Musang, Kelantan. Conservation assessments are included for the new species and the general threats faced by species confined to limestone hills are discussed. In addition, an updated key to all species of Polyalthia known from Peninsular Malaysia is provided.     

Evidence for a higher number of species of Odontotermes (Isoptera) than currently known from Peninsular Malaysia from mitochondrial DNA phylogenies

Termites of the genus Odontotermes are important decomposers in the Old World tropics and are sometimes important pests of crops, timber and trees. The species within the genus often have overlapping size ranges and are difficult to differentiate based on morphology. As a result, the taxonomy of Odontotermes in Peninsular Malaysia has not been adequately worked out. In this study, we examined the phylogeny of 40 samples of Odontotermes from Peninsular Malaysia using two mitochondrial DNA regions, that is, the 16S ribosomal RNA and cytochrome oxidase subunit I genes, to aid in elucidating the number of species in the peninsula. Phylogenies were reconstructed from the individual gene and combined gene data sets using parsimony and likelihood criteria. The phylogenies supported the presence of up to eleven species in Peninsular Malaysia, which were identified as O. escherichi, O. hainanensis, O. javanicus, O. longignathus, O. malaccensis, O. oblongatus, O. paraoblongatus, O. sarawakensis, and three possibly new species. Additionally, some of our taxa are thought to comprise a complex of two or more species. The number of species found in this study using DNA methods was more than the initial nine species thought to occur in Peninsular Malaysia. The support values for the clades and morphology of the soldiers provided further evidence for the existence of eleven or more species. Higher resolution genetic markers such as microsatellites would be required to confirm the presence of cryptic species in some taxa.     

A synopsis of Goniothalamus species (Annonaceae) in Peninsular Malaysia, with a description of a new species

The species of Goniothalamus (Annonaceae) occurring in Peninsular Malaysia and Singapore are revised, updating the previous taxonomic treatment by James Sinclair, published in 1955. A total of 18 species is recognized, including a new species, G. tomentosus . Collections referrable to G. tomentosus were previously determined as ' G. marcanii '; examination of the types of G. marcanii reveals that the two taxa are not conspecific, however, and a new name is accordingly validated here. Goniothalamus tomentosus has closest affinities with the Javan/Sumatran species G. costulatus . Other important nomenclatural changes include the reduction of G. umbrosus to synonymy with G. tapis .  © 2003 The Linnean Society of London, Botanical Journal of the Linnean Society, 2003, 142 , 321−339.