A comparative study of three closely related cytoplasmic polyhedrosis viruses

A cytoplasmic polyhedrosis virus (CPV) from the pine caterpillar, Dendrolimus spectabilis, was compared with Japanese isolates of closely related viruses from the silkworm, Bombyx mori, and gypsy moth, Lymantria dispar. The sizes of the viral RNA genome segments were almost identical, although the CPVs from D. spectabilis and L. dispar could be distinguished from the silkworm virus by a small size difference (0.03 × 10⁶ daltons) in one segment. The same viruses were also distinguishable by RNA homology differences of 25–50% measured by the reannealing of ³H-labeled single-stranded viral messenger RNA (synthesized in vitro) to heat-denatured viral double-stranded RNA. Antigenic differences were also detected by gel immunodiffusion tests. CPVs of D. spectabilis and L. dispar were indistinguishable by these criteria.     

Disease-parasitoid relationships in natural populations ofLymantria dispar [Lep.: Lymantriidae] in the Northeastern United States

ImmatureLymantria dispar L. were collected from 6 geographically distinct populations over 2 years to determine correlations between parasitoid and disease incidences. Incidence of the nuclear polyhedrosis virus disease (NPV) was found to be positively correlated with incidences of the parasitoidsApanteles melanoscelus (Ratzeburg) andParasetigena silvestris (Robineau-Desvoidy).     

Persistence of occluded viruses in the nests of the paper waspPolistes hebraeus (Hym.: Vespidae)

Bioassays were used to study the infectivity of cytoplasmic polyhedrosis viruses (CPVs), nuclear polyhedrosis viruses (NPVs) and entomopoxviruses (EPVs) contained in 16 nests of the paper waspPolistes hebraues F. in Réunion Island. Several virosis were propagated from 6 nest contents in 5 Lepidoptera:Catopsilia thauruma Saalmüller,Catopsilia florella F.,Callixena versicolora Mabille,Polydesma umbricola Boisduval andEagris sabadius Boisduval. Each of the previous species supported the development of one or two virosis and therefore, wasp nests must be considered as accumulating centres where infectivity of occluded entomoviruses is preserved. The accurate origin of the virosis propagated through bioassays was searched for using ecological investigations on similar natural diseases, REN analysis and a cross-transmission test onSpodoptera mauritia Boisduval. The nuclear polyhedrosis and one cytoplasmic polyhedrosis appearing in bioassays can be assigned respectively to viruses produced byC. thauruma andC. versicolora; the other virosis must be considered as developing in alternate or substitution hosts. Wasp nests could therefore be used to detect the presence of specific viruses in an environment and to collect new virus isolates.     

RNA and Macronuclear transcription in the ciliate Stylonychia mytilus

Nuclear and cytoplasmic RNA of Stylonychia mytilus were analyzed on denaturing polyacrylamide gels. The molecular weight of rRNA precursor molecules is within a range of 2.1×10⁶ daltons. A comparison between the electrophoretic pattern of nuclear non-ribosomal RNA and cytoplasmic mRNA indicates that a considerable amount of nuclear RNA sequences is of higher molecular weight than cytoplasmic RNA sequences. The molecular weight distribution of cytoplasmic RNA supports the assumption that also in Stylonychia an average sized mRNA molecule contains 1,200–1,500 nucleotides according to a molecular weight of 4×10⁵ to 5×10⁵ daltons. The size of the polyadenylic acid fragment of poly-A⁺ RNA molecules is about 120 nucleotides. The total mass of cytoplasmic RNA is around 7.5/10¹⁰ g/cell, corresponding to 1.2×10⁷ average sized mRNA molecules per cell. RNA excess hybridization experiments show that 60% of the DNA sequences are transcribed into nuclear RNA and that the cytoplasmic mRNA sequences are homologous to about 40% of macronuclear DNA sequences. There is no indication of different frequency classes within the mRNA. The number of different mRNA species in a Stylonychia cell is 1.2–1.5×10⁴. On the average each of them is present about 1,000 times in every cell.     

Cytogenetic studies in mammalian cells after treatment with insect pathogenic viruses [Baculoviridae]. II.In vitro studies with mammalian cell lines

Mammalian cell-lines from Chinese hamster, Indian muntjac and mouse were inoculated with infectious supernatant ofAutographa californica (Speyer) nuclear polyhedrosis virus (Ac NPV) replicated inMamestra brassicae (L.) cell cultures (IZD-Mb-0503). There was no adverse effect on cell proliferation, nor was a cytopathogenic effect (CPE) induced in such cultures. Cytogenetic data indicate that uptake ofAc-NPVs into the cytoplasm of mammalian cells, as shown by an electron microscopic study, induced neither numerical or structural chromosome aberrations nor sister chromatid exchange (SCE) events.     

Guidelines for safety tests on insect viruses

Guidelines for testing the safety of insect viruses for use as insecticides have been formulated in the light of the recent decade's experience and accumulation of knowledge. In the familyBaculoviridae, the nuclear polyhedrosis and granulosis viruses of Lepidoptera and sawflies (Hymenoptera) are a particularly homogeneous group which have been tested very extensively, without any evidence of hazard to man and vertebrates. It is considered, therefore, that data for viruses already tested can be used as evidence for the safety of a new virus in this group, so that only a limited series of mandatory tests are necessary on the new virus product itself. Other viruses may require the full range of tests, which include data on the identification of the virus; nature of the formulation; biological properties; manufacture; quality control; application; efficacy; residues; infectivity, toxicity and allergenicity in mammals (involving short, intermediate and long term application to various mammalian species by a variety of routes, and observation of humans who have handled the virus) and on wildlife (bees, important predators and parasites of target species, earthworms, fish and birds). It is recommended that additional non-mandatory research should be undertaken on subjects such as the behaviour of the viral genome, improved methods of identifying viruses and of testing safety.     

Vectoring gypsy moth nuclear polyhedrosis virus byApanteles melanoscelus [Hym.: Braconidae]

Gypsy mothLymantria dispar L. larvae were exposed toApanteles melanoscelus (Ratzeburg) females contaminated with nuclear polyhedrosis virus. Three methods of contamination (ovipositor, total body surface, and exposure to infected hosts) and two exposure periods (2 and 24 hours) were tested. A significantly greater incidence of larval mortality caused by virus occurred among larvae exposed to contaminated than among larvae exposed to uncontaminated parasites for 2 and 24 hours. No significant differences occurred in larval mortality caused by virus for the 3 methods of contamination for the 2- and 24-hour tests or in parasite emergence from larvae parasitized by contaminated or uncontaminated parasites.     

A high-resolution linkage map of the Rfd1, a restorer-of-fertility locus for cytoplasmic male sterility in radish (Raphanus sativus L.) produced by a combination of bulked segregant analysis and RNA-Seq

Key message

We utilized a combination of BSA and RNA-Seq to identify SNPs linked to the Rfd1 locus, a restorer-of-fertility gene in radish. A high-density linkage map was constructed using this approach.

Abstract

Male fertility of cytoplasmic male sterility conditioned by the Dongbu cytoplasmic and genic male-sterility cytoplasm can be restored by a restorer-of-fertility locus, Rfd1, in radish. To construct a high-density linkage map and to identify a candidate gene for the Rfd1 locus, bulked segregant analysis and RNA-seq approaches were combined. A total of 26 and 28 million reads produced from male-fertile and male-sterile bulked RNA were mapped to the radish reference unigenes. After stringent screening of SNPs, 327 reliable SNPs of 109 unigenes were selected. Arabidopsis homologs for 101 of the 109 genes were clustered around the 4,000 kb region of Arabidopsis chromosome 3, which was syntenic to the Rfd1 flanking region. Since the reference unigene set was incomplete, the contigs were de novo assembled to identify 134 contigs harboring SNPs. Most of SNP-containing contigs were also clustered on the same syntenic region in Arabidopsis chromosome. A total of 21 molecular markers positioned within a 2.1 cM interval including the Rfd1 locus were developed, based on the selected unigenes and contigs. A segregating population consisting of 10,459 individuals was analyzed to identify recombinants containing crossovers within this interval. A total of 284 identified recombinants were then used to construct a high-density map, which delimited the Rfd1 locus into an 83-kb syntenic interval of Arabidopsis chromosome 3. Since no candidate gene, such as a pentatricopeptide repeat (PPR)-coding gene, was found in this interval, 231 unigenes and 491 contigs containing putative PPR motifs were analyzed further, but no PPR gene in linkage disequilibrium with the Rfd1 locus could be found.     

Contact toxicity of some chemical and biological pesticides to several insect parasitoids and predators

Eight pesticides; methyl parathion, malathion (organo-phosphates), toxaphene (chlorinated hydrocarbon), carbaryl (carbamate), pyrethrin (plant derivative),Bacillus thuringiensis, nuclear polyhedrosis virus (Heliothis) (microbial insecticides), and 2,4-DB (postemergence herbicide) were evaluated at the minimum recommended field dose and reduced dosages for contact toxicity toBrachymeria intermedia (Hymenoptera: Chalcididae), Campoletis sonorensis (Hymenoptera: Ichneumonidae), Chelonus blackburni (Hymenoptera: Braconidae), Meteorus leviventris (Braconidae), Voria ruralis (Diptera: tachninidae), Chrysopa carnea (Neuroptera: Chrysopidae), andHippodamia convergens (Coleoptera: Coccinellidae). At minimum field dosages, percent mortality of parasitoids and predators was>27%, for the chemical insecticides. Mortality from pyrethrin was <31%, in all cases and 0% for 5 of the 8 species tested. Mortality of parasitoids and predators exposed toB. thuringiens is and NPV was<4% while mortality from 2,4-DB was<7%. The toxicity of chemical insecticides to parasitoids and predators at reduced dosages in increasing order of toxicity was malathion > carbaryl > toxaphene > methyl parathion.     

Developmental changes in chromatin of skeletal muscle of rats: acetylation of chromosomal proteins and transcription

In vivo acetylation of chromosomal proteins and RNA synthesis were studied in the skeletal muscle of 3–30 day old developing rats. The levels of acetylated histones and nonhistone chromosomal (NHC) proteins are high at day 3 and decrease as development progresses. Spermine has no significant effect on acetylation. Incorporation of³H-Uridine into RNA of both nuclear and cytoplasmic fractions is also maximum at day 3 and plateaus by day 14. Nuclear RNA synthesis following acetylation of chromosomal proteins is greatly stimulated in all the ages studied, whereas that in cytoplasmic RNA occurs only in 3 day old rats. Such modifications during early development may bring about conformational and functional changes in the chromatin and contribute significantly to the process of terminal differentiation of skeletal muscle cells.     

Nuclear polyhedrosis virus infection ofPseudoplusia includens [Lep.: Noctuidae] larvae: Effect on post larval stages and transmission

Treatment ofPseudoplusia includens (Walker) larvae in either the 4th, 5th or 6th stage with a nuclear polyhedrosis virus (NPV) did not affect the weight or sex ratio of surviving pupae. Pupal mortality was low but increased with the dosage of the NPV larvae had received. Also, mortality of pupae from larvae treated in the 5th or 6th stage was higher than from larvae treated in the 4th stage. Adult longevity was not affected by the virus. Fecundity and egg viability were reduced following most treatments of 6th stage larvae but not 4th or 5th stage larvae. Adults exposed to NPV at 3 dosages during the 6th larval stage were released in cages on soybean. Some of the progeny succumbed to NPV infection. Progeny mortality increased over a 7 week period of adult release, but did not differ significantly between treated and untreated groups by the end of the 7 week period.     

Response of the population size and community structure of Paenibacillus spp. to different fertilization regimes in a long-term experiment of red soil

Background and aims

Paenibacillus spp. are widely considered to impact the fertility and health of soil. The aim of this study was to evaluate how different fertilization regimes affect the population size and community structure of Paenibacillus spp. over a long period of time in red soil.

Methods

Soil samples were collected from a long-term experiment and were then analyzed using real-time PCR and PCR-DGGE. The correlation analysis, PCA and RDA were used to explore the relationships among Paenibacillus spp. population, community structure and soil properties in different treatments.

Results

The pH was seriously decreased only by the application of chemical fertilizer. The largest population of Paenibacillus spp. was found in the soil treated with organic fertilizer application, while the richest diversity was observed in the soil treated only with the chemical fertilizer. The Paenibacillus spp., Paenibacillus alkaliterrae, Paenibacillus campinasensis, and Paenibacillus xylanilyticus were found in all treatments. Paenibacillus castaneae was found in the soil treated with NPK, and Paenibacillus pabuli was specifically observed in the lime-amended treatment. Paenibacillus taichungensis and Paenibacillus prosopidis were detected in the soil treated with only chemical fertilizer. Except for the ammonium and pH, all the tested soil fertility parameters (total C, total N, nitrate, available K and available P) could significantly affect both the Paenibacillus spp. population number and diversity. The soil pH was significantly correlated with Paenibacillus spp. diversity only.

Conclusions

Our results indicate that the different long-term fertilization regimes have varied impact on both the Paenibacillus spp. population size and the diversity of the community associated with the soil properties tested. These results can help to enrich the information on the response of beneficial soil microbes to different long-term fertilization regimes.     

Susceptibility ofArabidopsis thaliana (L.)Heynh. to infection with some plant viruses

Arabidopsis thaliana was susceptible to eight out of ten investigated viruses with six of which it did not show any symptoms of local infection; this appeared only in two cases.A. thaliana was a symptomless carrier for three viruses. The considerably distinct systemic symptoms after the infection with turnip yellow mosaic, tomato black ring, cucumber mosaic and cabbage black ring viruses make possible a very reliable and specific distinction of the causal agens.A. thaliana could be used for these viruses as a differential host.     

Activation of latent virus infections in larvae of Adoxophyes orana (Lepidoptera: Tortricidae) and Barathra brassicae (Lepidoptera: Noctuidae) by foreign polyhedra

The number of larvae containing polyhedra increased when larvae of Adoxophyes orana and Barathra brassicae were fed on polyhedra of nuclear polyhedrosis virus (NPV) of the reciprocal species. Comparison of restriction endonuclease EcoRI cleavage patterns of DNA isolated from polyhedra used as inocula and from polyhedra obtained after cross-inoculation showed that cross infection did not occur. The observations indicate that latent viruses were activated in both insects. Activation of the A. orana latent NPV with polyhedra of a cytoplasmic polyhedrosis virus (CPV) of B. brassicae, and cross-inoculation with an extract prepared from healthy larvae indicated that an activating agent does not have to be a component of nuclear polyhedra.     

18. Isolation of a Cytoplasmic Polyhedrosis Virus by Physical and Immunological Techniques

ABSTRACT

Procedures are described for the separation and purification of cytoplasmic polyhedrosis viruses obtained from multiply infected Heliothis armigera larvae. Separation was achieved by differential centrifugation and density gradient zone electrophoresis followed by complexing with nuclear polyhedrosis virus specific antibody. The yield of cytoplasmic polyhedrosis virus was increased by passage in larvae reared on synthetic media.     

Nuclear-cytoplasmic compatibility and the state of mitochondrial and chloroplast DNA regions in alloplasmic recombinant and introgressive lines (H. vulgare)-T. aestivum

Alloplasmic lines combining alien nuclear and cytoplasmic genomes are convenient models for studying the mechanisms of nuclear-cytoplasmic compatibility/incompatibility. In the present study, we have investigated the correlation between the characters and state of mitochondrial (mt) and chloroplast (cp) DNA regions in alloplasmic recombinant common wheat lines with barley cytoplasm characterized by partial or total fertility. Fertility restoration in the studied lines (Hordeum vulgare)-Triticum aestivum is determined by different ratios of the genetic material of common wheat variety Pyrotrix 28, which is a fertility restorer in the cytoplasm of barley, and variety Saratovskaya 29, which is a fixer of sterility. In partially fertile lines with nuclear genomes dominated by the genetic material of Saratovskaya 29, plant growth and development are suppressed. In these lines we have identified the barley homoplasmy of cpDNA regions infA and rpoB and the heteroplasmy of the 18S/5S mt repeat and the cpDNA ycf5 region. Nuclear-cytoplasmic compatibility in lines with reduced fertility (the genetic material of Pyrotrix 28 predominates in their nuclear genomes) is associated with restoration of normal plant growth and development and the changes in the state of the studied cpDNA and mtDNA regions towards the wheat type. Thus, in fertile lines, the cpDNA regions (infA, rpoB) and the 18S/5S mt repeat were identified in the homoplasmic wheat state; though the cpDNA ycf5 region was in the heteroplasmic state, it was dominated by the wheat type of the copies. The nuclear-cytoplasmic compatibility is not broken as a result of introgression of the alien genetic material into the nuclear genome of one of the fertile lines; the plants of introgressive lines are fertile and normally developed, and the states of the cpDNA and mtDNA regions correspond to their states in fertile recombinant lines.     

Association of interleukin 1 receptor antagonist (IL1RN) gene polymorphism with recurrent pregnancy loss risk in the North Indian Population and a meta-analysis

An appropriate ratio of interleukin 1 beta to interleukin 1 receptor antagonist (IL1Ra) is required for successful pregnancy. Our objective was to study the genetic association between IL1RN variable numbers of tandem repeat (VNTR) polymorphism and recurrent pregnancy loss (RPL). To analyze the association between IL1RN VNTR allele and RPL, we investigated the IL1RN VNTR polymorphism in 136 RPL patients and in 200 healthy control women. Meta-analysis on this polymorphism was conducted to support our findings. PCR based approach was used to analyze IL1RN VNTR polymorphism and it was further confirmed by sequencing. Systematic review and meta-analysis was done using electronic database (Pub-Med, Google Scholar and Ovid) up to February 27, 2013. This meta-analysis was assessed by comprehensive meta-analysis software version 2. For meta-analysis 549 cases and 1,450 controls were included. The frequency of IL1RN genotype 2/2 was significantly higher in RPL compared to control group (AORs 3.10, 95 % CI 1.58–6.11, p = 0.001). The presence of rare allele also increased the risk of RPL significantly (ORs 1.63, 95 % CI 1.16–2.29, p = 0.004). The meta-analysis stratified by ethnicity showed that individuals with allele 2 had increased risk of RPL (OR 1.29, 95 % CI 1.04–1.61, p = 0.01), in Asians population by using fixed model. However the data of the present study clearly suggests that IL1RN VNTR polymorphism is a genetic risk factor for pregnancy loss in the study population.