Ecological lever and interface ecology: epibiosis modulates the interactions between host and environment

The properties of the body surface play a crucial role in most interactions of marine organisms. Critical ecological properties such as drag, morphology, uptake and release of radiation and organic matter are linked to the body surface of an aquatic organism. The properties and functions of this interface may be modified substantially by the presence and activities of epibiotic communities. This, in turn, may lead to substantial modulation of the interactions between the organism bearing epiphytes and its environment, with consequences for the relative fitness of the host organism (basibiont) and its interactors, and ultimately, the structure and functioning of the assemblage. Epibiosis may act as an ecological lever via these indirect effects, greatly amplifying or buffering biotic and abiotic stress.     

Body plan of consumed organisms influences ecological range of consumers through neural processing bias

The number of different resources used by an organism to feed, reproduce, and survive (ecological range) is a key determinant of community structure and community response to environmental change. It is known empirically that animals can have strong sensory biases, and here we use artificial neural networks to demonstrate how such biases may influence ecological range. We show that networks have strong biases for resources of a certain shape, producing distinct profiles of "cognitive accuracy" with ecological range. Generally, ecological specialization is tolerated for some resource body plans more than others; however, certain combinations of resources actually promote ecological specialization by producing local maxima in cognitive accuracy. Some of the variation in ecological range across consumers may be explained by these interactions between evolving nervous system and resource shape. Ecological patterns at even the largest of scales may be influenced by the miniscule processes of information exchange within networks of neurons.     

Ontogenetic and spatial variation in size‐selective mortality of a marine fish

Although body size can affect individual fitness, ontogenetic and spatial variation in the ecology of an organism may determine the relative advantages of size and growth. During an 8‐year field study in the Bahamas, we examined selective mortality on size and growth throughout the entire reef‐associated life phase of a common coral‐reef fish, Stegastes partitus (the bicolour damselfish). On average, faster‐growing juveniles experienced greater mortality, though as adults, larger individuals had higher survival. Comparing patterns of selection observed at four separate populations revealed that greater population density was associated with stronger selection for larger adult size. Large adults may be favoured because they are superior competitors and less susceptible to gape‐limited predators. Laboratory experiments suggested that selective mortality of fast‐growing juveniles was likely because of risk‐prone foraging behaviour. These patterns suggest that variation in ecological interactions may lead to complex patterns of lifetime selection on body size.     

Morphological differentiation correlates with ecological but not with genetic divergence in a Gehyra gecko

Body size affects life history, the ecological niche of an organism and its interactions with other organisms. Resultantly, marked differences in body size between related organisms are often an indication of a species boundary. This is particularly evident in the Gehyra variegata species complex of geckos, which displays differential body sizes between genetically divergent species, but high levels of intraspecific morphological conservatism. We report on a Gehyra population that displays extraordinary body size differentiation in comparison with other G. variegata species. We used morphological and environmental data to show this population is phenotypically and ecologically distinct from its parapatric congener Gehyra lazelli and that morphology and ecology are significantly correlated. Contrastingly, mtDNA analysis indicates paraphyly between the two groups, and allele frequencies at six microsatellite loci show no population structure concordant with morpho‐/ecotype. These results suggest either ecological speciation or environmentally induced phenotypic polymorphism, in an otherwise morphologically conservative group.     

Acidification history and crustacean remains: some ecological obstacles

Crustacean remains are not yet useful as parameters for assessing the recent acidification phenomenon, due to too few studies on their ecology. The changes observed in the sediments are related not just to changes in lake chemistry, but also to predatory and competitive interactions. Moreover, the habitat pH of the organism may differ from the measured lake pH, and may as such not be representative. Therefore, species in some acidic lakes may decrease their abundance, whereas the same species in nearby acidic lakes increase. The caution mainly concerns species with no clear pH distribution. Species predominant in acidic or alkaline lakes generally follow patterns more closely related to their physiology. Study of pelagic species, including both body size and shape measurements, should be included in the analysis. If all the ecological factors are included, animal as well as algal remains would form powerful tools to reveal lake histories.     

Leveraging nature's backup plans to incorporate interspecific interactions and resilience into restoration

Interspecific interactions are important structuring forces in ecological communities. Interactions can be disturbed when species are lost from a community. When interactions result in fitness gains for at least one participating organism, that organism may experience reduced fitness as a result of interaction disturbance. However, many species exhibit traits that enable individuals to persist and reproduce in spite of such disruptions, resulting in resilience to interaction disturbance. Such traits can result in interaction generalization, phenotypic and behavioral plasticity, and adaptive capacity. We discuss examples of these traits and use case studies to illustrate how restoration practitioners can use a trait‐based approach to examine species of concern, identify traits that are associated with interspecific interactions and are relevant to resilience, and target such traits in restoration. Restoration activities that bolster interaction resilience could include, for example, reintroducing or supporting specific functional groups or managing abiotic conditions to reduce interaction dependence by at‐risk species (e.g. providing structural complexity offering shelter and cover). Resilience may also be an important consideration in species selection for restoration. Establishment of resilient species, able to persist after interaction disturbance, may be essential to restoring to a functioning ecological community. Once such species are present, they could help support more specialized species that lack resilience traits, such as many species of concern. Understanding the conditions under which processes linked to resilience may enable species to persist and communities to reform following interaction disturbance is a key application of community ecology to ecological restoration.     

Rethinking individuality: the dialectics of the holobiont

Given immunity’s general role in the organism’s economy—both in terms of its internal environment as well as mediating its external relations—immune theory has expanded its traditional formulation of preserving individual autonomy to one that includes accounting for nutritional processes and symbiotic relationships that require immune tolerance. When such a full ecological alignment is adopted, the immune system becomes the mediator of both defensive and assimilative environmental intercourse, where a balance of immune rejection and tolerance governs the complex interactions of the organism’s ecological relationships. Accordingly, immunology, which historically had affiliated with the biology of individuals, now becomes a science concerned with the biology of communities. With this translocation, the ontological basis of the organism is undergoing a profound change. Indeed, the recent recognition of the ubiquity of symbiosis has challenged the traditional notions of biological individuality and requires a shift in the metaphysics undergirding biology, in which a philosophy of the organism must be characterized by ecological dialectics “all-the-way-down.”     

浮游动物化学计量学稳态性特征研究进展

稳态性是有机体的基本属性,也是生态化学计量学理论成立的前提和基础。一般来讲,浮游植物的元素组成变化较大,而浮游动物具有明显的稳态性特征。浮游动物稳态性特征的研究不仅有助于了解水生生态系统的能量流动和物质循环,同时也对研究营养元素如何调节生物生长、繁殖和代谢起到促进作用。在综述生态化学计量学研究的基础上,主要介绍了稳态性的概念和浮游动物稳态性特征的基本框架及变化规律,以期为促进国内相关研究工作的开展提供参考。     

Constructional constraint and its ecomorphological implications

This paper analyses the role of constructional morphology in explaining the limitations on the interactions between an organism and those factors in its environment which are potentially relevant to its inclusive fitness. Constructional morphology deals with the relations between functionally relevant anatomical units (apparatuses or functional components) and thereby demonstrates what quantitative and qualitative constraints there are on combining units necessary for environmental interactions. It is argued that investigations on the relations between form and environment (ecological morphology) should (1) consider three types of relations: form-form, form-function and function-environment factor, (2) include behavioral and physiological ecology and (3) not be limited to a particular stage, but include as much of ontogeny as possible.     

Symmetry and range limits in importance indices

Recently, Mingo has analyzed the properties of I_imp, an importance index, and demonstrated that its range is not symmetrical. While agreeing with this comment, we believe that more light needs to be shed on the issue of symmetry in relation to such indices. Importance indices are calculated using three values: performance of the organism in the absence and in the presence of neighbors and maximum performance of the organism in ideal conditions. Because of this structure, importance indices can hardly ever achieve symmetry along the whole range of potential performances. We discuss the limitation of the symmetry range for different symmetry types and for both additive and multiplicative indices. We conclude that importance indices, as other interactions indices, are practical tools for interpreting ecological outcomes, especially while comparing between studies. Nevertheless, the current structure of importance indices prevents symmetry along their whole range. While the lack of “perfect” symmetry may call for the development of more sophisticated importance metrics, the current indices are still helpful for the understanding of biological systems and should not be discarded before better alternatives are well established. To prevent potential confusion, we suggest that ecologists present the relevant index symmetry range in addition to their results, thus minimizing the probability of misinterpretation.     

Behavior as a key component of integrative biology in a human-altered world

A major grand challenge in biology is to understand the interactions between an organism and its environment. Behavior resides in the central core of this association as it affects and is affected by development, physiology, ecological dynamics, environmental choice, and evolution. We present this central role of behavior in a diagram illustrating the multifaceted program emphasizing the necessity for understanding this nexus and to fully appreciate the organism in its environment given the ongoing changes affected by contemporary human induced, rapid environmental change (HIREC). We call for the consideration of educational and research focuses to concentrate on the interdisciplinary role that behavior plays in the integration of biological processes.     

Pleistocene megafaunal interaction networks became more vulnerable after human arrival

The end of the Pleistocene was marked by the extinction of almost all large land mammals worldwide except in Africa. Although the debate on Pleistocene extinctions has focused on the roles of climate change and humans, the impact of perturbations depends on properties of ecological communities, such as species composition and the organization of ecological interactions. Here, we combined palaeoecological and ecological data, food-web models and community stability analysis to investigate if differences between Pleistocene and modern mammalian assemblages help us understand why the megafauna died out in the Americas while persisting in Africa. We show Pleistocene and modern assemblages share similar network topology, but differences in richness and body size distributions made Pleistocene communities significantly more vulnerable to the effects of human arrival. The structural changes promoted by humans in Pleistocene networks would have increased the likelihood of unstable dynamics, which may favour extinction cascades in communities facing extrinsic perturbations. Our findings suggest that the basic aspects of the organization of ecological communities may have played an important role in major extinction events in the past. Knowledge of community-level properties and their consequences to dynamics may be critical to understand past and future extinctions.     

Functional genomic analysis of an uncultured δ-proteobacterium in the sponge Cymbastela concentrica

Marine sponges are ancient, sessile, filter-feeding metazoans, which represent a significant component of the benthic communities throughout the world. Sponges harbor a remarkable diversity of bacteria, however, little is known about the functional properties of such bacterial symbionts. In this study, we present the genomic and functional characterization of an uncultured δ-proteobacterium associated with the sponge Cymbastela concentrica. We show that this organism represents a novel phylogenetic clade and propose that it lives in association with a cyanobacterium. We also provide an overview of the predicted functional and ecological properties of this δ-proteobacterium, and discuss its complex interactions with surrounding cells and milieu, including traits of cell attachment, nutrient transport and protein–protein interactions.     

Adaptation and ecological resistance

The notion fitness, widely used in genetics usually serves to measure a relative rate of organism reproduction. Another important character of an organism is its ecological resistance which is basically the product of macroevolution. It can be determined as a probability of an organism survival and participation in reproduction of the species. Ecological resistance determines the level of the accidental death of organisms that are genetically valuable. For the comparison of ecological resistance in different organisms and species the negative meanings of the Malthusian parameter can be used. Ecological resistance depends on the presence in genomes of essential genes and fairly complete sets of nonessential, or adaptive, genes which can reside in genomes both as "plus" and "minus" alleles. The recovery of complete sets of adaptive genes lost as a result of mutations and, thus, of a high level of ecological resistance in organisms is provided by genetic exchange between them. With respect to mutations leading to the increase in fitness the effect of genetic exchange is negative since it leads to the formation of recombination load, i.e. a decrease in fitness of the offspring. In microevolutionary processes, the elevation in ecological resistance level does not take place since it requires a long time for the formation of new genes and new elements of organization in the process of positive selection. At the same time, a constant recovery of a high level of ecological resistance of the species decreased as a result of mutations takes place in some individuals due to genetic exchange. Mutations affecting ecological resistance of an organism, as a rule, cause a decrease in its viability and they are usually excluded from populations as a result of negative (stabilizing) selection.     

A New Approach to Homeostatic Regulation: Towards a Unified View of Physiological and Ecological Concepts

Stoichiometric homeostasis is the ability of an organism to keep its body chemical composition constant, despite varying inputs. Stoichiometric homeostasis therefore constrains the metabolic needs of consumers which in turn often feed on resources not matching these requirements. In a broader context, homeostasis also relates to the capacity of an organism to maintain other biological parameters (e.g. body temperature) at a constant level over ambient environmental variations. Unfortunately, there are discrepancies in the literature and ecological and physiological definitions of homeostasis are disparate and partly contradictory. Here, we address this matter by reviewing the existing knowledge considering two distinct groups, regulators and conformers and, based on examples of thermo- and osmoregulation, we propose a new approach to stoichiometric homeostasis, unifying ecological and physiological concepts. We suggest a simple and precise graphical way to identify regulators and conformers: for any given biological parameter (e.g. nutrient stoichiometry, temperature), a sigmoidal relation between internal and external conditions can be observed for conformers while an inverse sigmoidal response is characteristic of regulators. This new definition and method, based on well-studied physiological mechanisms, unifies ecological and physiological approaches and is a useful tool for understanding how organisms are affected by and affect their environment.     

阿特拉津生态风险及其检测和修复技术研究进展

随着农药等化学品在农业生产上的广泛应用,它们所带来的生态与环境问题日益严重。在世界许多国家和地区的地表水和地下水中以及大气沉降物中检测出了阿特拉津的残留物,它对生态环境的影响具有全球性。阿特拉津在土壤中的持留期较长并具有生物蓄积性,对粮食和食品安全构成潜在威胁。动物试验结果表明,阿特拉津具有生物活性,因此深入研究阿特拉津的生态风险问题是当务之急。文中提出了有关阿拉津生态风险研究的一些观点。随着各种检测分析手段的发展,阿特拉津的检测技术日臻成熟,为研究阿特拉津生态风险创造了有利条件。阿特拉津的生物修复技术已被高度重视。     

Some unsolved aspects of the parasitism problem

Various interpretations of the parasitism phenomenon exist. In this work data supporting the ecological understanding of its nature are presented. For parasitic species formed in the process of evolution the host organism has become the habitat (nutrition, multiplication), i.e., the environment, where interactions between the host and parasites are governed by ecological regularities. The consequences of this interactions are different (disease, asymptomatic infection), being secondary they reflect the result of concrete interactions. For this reason parasitism should not be identified in terms of only one consequence of such interaction--the development of pathologic processes.     

Energy analysis of wrist impact and surface rebound

The mechanical interactions during impact of a falling human body onto a non-rigid surface are complex. Mechanical properties of both the impacting body and the impacted surface contribute to risk of injury. Increased understanding of these properties should provide insight into the process and how to reduce injury risk. We assessed whether modelling energy flows in the body during impact can provide useful information. As input, we used data from gymnastic tumbling mats and from children performing an exercise involving freefall onto an outstretched arm. Even basic energy transfer principles provided information not discerned by the mechanical approach traditionally used. The model identified differences between surfaces in how energy flowed through an arm and the strains imposed on the wrist during impact and rebound. Therefore, it shows promise for identifying potentially injurious human–surface interactions. Analysis of other human impact situations, and the relationship between the energy flow and injury risk, is planned.     

Selfhood, Immunity, and the Biological Imagination: The Thought of Frank Macfarlane Burnet

The language of self and nonself has had a prominent place inimmunology. This paper examines Frank Macfarlane Burnet's introductionof the language of selfhood into the science. The distinction betweenself and nonself was an integral part of Burnet's biological outlook– of his interest in the living organism in its totality, itsactivities, and interactions. We show the empirical and conceptualwork of the language of selfhood in the science. The relation betweenself and nonself tied into Burnet's ecological vision of host-parasiteinteraction. The idiom of selfhood also enabled Burnet to organizeand unify a diversity of immune phenomena. Rather than approach thelanguage of self and nonself as a bluntly imposed metaphor, we focuson its endogenous origins and immanent uses in immunology.