Robustness of size–structure across ecological networks in pelagic systems

The study of biomass size distributions has become an important tool for addressing aquatic ecosystem complexity and the consequences of anthropogenic disturbances. However, it remains unclear how changes in pelagic food web topology affect the biomass size–structure. Employing a dynamic multispecies bioenergetic consumer-resource model, we simulated biomass trajectories over time in 10,000 virtual networks of varying topology to address which food web properties are important in determining size–structure in pelagic systems. The slopes of the normalized biomass size spectra (NBSS) and Pareto’s shape parameter (γ) of our modeled communities are consistent with theoretically expected values for steady-state systems and empirical values reported for several aquatic ecosystems. We found that the main drivers of the NBSS slope and Pareto’s γ were the slope of the relationship between body mass and trophic level, the maximum trophic level of the food web, and the stability of total community biomass. Our analyses showed a clear conservative trend in pelagic community size–structure as demonstrated by the robustness of the NBSS slope and Pareto’s γ against most of the topological changes in virtual networks. Nevertheless, these analyses also caution that major disturbances in large-bodied or top-trophic level individuals may disrupt this stable pattern.     

Genetic analysis of transgenome structure and size of chromosome-mediated gene transfer lines

The TK-selected chromosome-mediate gene transferlines were analysed using DNA dot blot method,G-11banding and in situ hybridization.The results showedthat CMGT can provide a wide variety of intermediatesize of the transgenome from greater than 80,000kb toless than 2,000kb.Some of transfectants are intergratedinto mouse chromosome which can be detected by G-11banding and in situ hybridization     

Genetic analysis of transgenome structure and size of chromosome—mediated gene transfer lines

The TK-selected chromosome-mediate gene transfer lines were analysed using DNA dot blot method G-11 banding and in situ hybridization.The results showed that CMGT can provide a wide variety of intermediate size of the transgenome from greater than 80,000kb to less than 2,000kb,Some of transfectants are intergrated into mouse chromosome which can be detected by G-11 banding and in situ hybridization.     

Nest structure and size distribution in the genusTrinervitermes (Isoptera,Termitidæ, Nasutitermitinæ) in West Africa

Summary This paper is one of a series of comparative studies of the biology and ecology of five species ofTrinervitermes occurring in West Africa. The nest structure of each is described in detail, and specific differences are given. The largest mounds are those ofT. carbonarius followed byT. conomus andT. ebenerianus in that order.T. auriterræ andT. suspensus do not produce mounds sufficiently often for their average size to be estimated. Large numbers of measurements ofT. ebenerianus mounds have been used to construct a frequency distribution of size, which is considered to be the resultant of three or four component normal distributions. These are thought to arise from the seasonal activities of the termites, each distribution representing the mounds of one year. On the basis of this hypothesis it is suggested that in the population examined the mean annual increment of mounds is four to five inches diameter; colony expansion is probably by the erection of supplementary mounds after the primary mounds reach three or four years of age. The mean number of mounds per colony is probably between three and six.

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Zusammenfassung Dieser Artikel gehört zu einer Reihe von vergleichenden Studien der Biologie und kologie von fünf Arten vonTrinervitermes, die in Westafrika vorkommen. Die Neststruktur wird für jede Art im einzelnen beschrieben, und die speziellen Unterschiede werden hervorgehoben. Der Grösse nach angeordnet stehen die Hügel vonT. carbonarius an erster, die vonT. conomus an zweiter und die vonT. ebenerianus an dritter Stelle.T. auriterræ undT. suspensus bauen nur selten Hügel, und ihre durchschnittliche Grösse ist deshalb nicht abzuschätzen. Eine Bestimmung der Häufigkeitsverteilung der Grösse wurde an Hand von zahlreichen Messungen anT. ebenerianus Hügeln durchgeführt. Diese Häufigkeitsverteilung wird als die Resultante von drei oder vier normalen Verteilungskomponenten angesehen. Es ist anzunehmen, dass diese Komponenten durch die Tätigkeit der Termiten während der verschiedenen Jahreszeiten entstehen, so dass jede Verteilung die während eines Jahres angelegten Hügel darstellt. Auf Grund dieser Hypothese würde sich ergeben, dass für die untersuchte Population die mittlere jährliche Zunahme des Durchmessers der Hügel 10–12 cm beträgt. Die Ausdehnung der Kolonie erfolgt durch Anlage zusätzlicher Hügel, wenn die ursprünglich vorhandenen drei bis vier Jahre alt sind. Jede kolonie besitzt im Durchschnitt drei bis sechs Hügel.

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Résumé On a décrit en détail la construction des nids de cinq espèces deTrinervitermes en Afrique Occidentale, montrant les différences inter-spécifiques. Parmi les termitières la plus grosse est construite parT. carbonarius, suivi deT. conomus etT. ebenerianus dans cet ordre. LesT. auriterræ etT. suspensus ne bâtissent que rarement les termitières et on ne peut pas obtenir la moyenne statistique de leur grosseur. On a déterminé chez les termitières deT. ebenerianus une fréquence de tailles, composée on pense de trois ou quatre distributions normales interactives. On présente l'hypothèse que celles-ci sont déterminées par les activités en saison, chaque distribution représentant les termitières construites en une seule année, et que l'augmentation annuelle est en moyenne de 10 à 12 centimètres en diamètre; l'expansion des colonies après que les termitières originales ont atteint leur grosseur habituelle après trois ou quatre ans est due aux termitières supplémentaires. Le nombre moyen de nids dans une colonie est probablement entre trois et six.

     

Absorptive root area and stem resistivity in whole trees of contrasting structure and size – improvement of methods

Aims

The study was focused on comparing the results of the three instrumental methods applied simultaneously for root studies in several tree species representing contrasting situations: root systems of different structure and stems of a wide range of diameters (especially when considering their resistivity). We want to learn properties of the methods, make some improvements and test their validity, before they will be applied to a large series of trees at the stand level.

Material and methods

Douglas fir (Pseudotsuga menziessii (Mirbel) Franco) with very asymmetric root system and Blue spruce (Picea pungens Engelm.) with homogeneous root system growing in the Mendel University Training Forest Enterprise in K?tiny, were selected as the main sample trees. Three variants of stem impedance measurements needed for absorptive root area estimates were applied to an additional series of over 20 trees. In order to characterize vertical and circumferential (around stem) root distribution we applied (1) the sap flow radial patterns measured by the multi-point sensors based on the heat field deformation (HFD) method, and (2) a modified earth impedance (MEI) method from the group of thermodynamic and electric measuring methods and finally we (3) almost harmlessly excavated the whole root system by supersonic air stream. Three steps of absorptive root area measurements were improved: (a) Impact of stem impedance was almost eliminated, (b) Excessive variation of stem impedance values measured too close to stems (in a place with the most heterogeneous materials) was compensated by extrapolation of several close points, (c) Impact of high curvature of small stems was determined and eliminated by an equation.

Results

All the methods gave similar results when considering differences between individual trees as well as between stem sides. Sap flow density was interesting when expressed per measured absorptive root area and leaf area. Experimental data of main and additional sample trees confirmed validity of relationship, which can be applied to improve stem resistivity especially in small trees.

Conclusions

Results indicated, that all the instrumental methods are field applicable and suitable for quantitative measurements, when specific properties of the methods and stem macrostructure are taken into account. Soil electric parameters characterize the important properties related to presence of cracks, water content, and ion concentration, which are being analyzed now.     

Does size matter?

For 40 years, the debate has raged. Do mammalian cells monitor cell size when deciding whether to divide? More recent models suggest an indirect solution, but the field is far from reaching a final verdict.     

Community size structure of zooplanktonic assemblages in three lakes on the upper River Paraná floodplain, PR-MS, Brazil

Abundance and body size of zooplanktonic organisms, testate amoebae, rotifers, cladocerans and copepods from the littoral and pelagic regions of three lakes were analyzed in February and August 2000. The lakes belong to three different river systems (Baía, Ivinhema and Paraná rivers) of the upper River Paraná floodplain. It was expected that average body size was different in space (regions of the lake and limnological characteristics) and time (summer and winter) because the variation of depth, pH, oxygen dissolved, chlorophyll-a and water temperature of each lake. Zooplankton community was represented by 119 species. Sorensen's coefficient showed that the three communities were similar. Larger organisms were found in the lakes' pelagic region, and seasonally larger individuals were registered in the winter and smaller individuals in the summer. The relationship between body size and density was slight, positively significant. The body size frequency distribution was bi-modal. ANOVA results showed a significant influence of the interaction of the littoral and pelagic regions, lakes, and seasons in the body size of zooplankton organisms. Spatial and temporal changes of the community size structure of zooplanktonic assemblages were related to the food resource (microbial-loop or herbivore chain), species habitat preference and life strategies (growth and reproduction).     

The effect of the entry and re-entry size in the aortic dissection: a two-way fluid–structure interaction simulation

Biomechanics and Modeling in Mechanobiology - Aortic dissection (AD) is one of the most catastrophic cardiovascular diseases. AD occurs when a layer inside the aorta is disrupted and gives rise to...     

Invertebrate predator-prey body size relationships: an explanation for upper triangular food webs and patterns in food web structure?

Summary It has been suggested by Cohen and Newman (1985) that many of the patterns in published food webs can be derived from a stochastic model in which the species are arranged in a trophic hierarchy (the cascade model). We suggest that, if predators are larger than their prey, a trophic hierarchy can be generated on the basis of body size Empirical evidence from the literature shows that there is a positive relationship between predator and prey size for a range of invertebrates and that predators are usually larger than their prey. Using experimental data on an aquatic food web we show that body size can lead to the type of trophic hierarchy used in the cascade model, suggesting that many food web patterns may be a product of body size. This conclusion is discussed with respect to the limitations of the food web data and the relationship between static and dynamic models of web structure.     

Is diatom size selection by harpacticoid copepods related to grazer body size?

Copepods are known as important consumers of primary production and are eaten by larger animals. They therefore form a main link to higher trophic levels. While feeding pathways and specificity of planktonic copepods have been well studied, the selectivity of the benthic harpacticoid copepods is far less documented. A better knowledge of the functional ecology of harpacticoids as important grazers on primary producers may have consequences for the re-evaluation of basic energy flow in benthic ecosystems.We tested whether size selectivity for diatoms exists in harpacticoid copepods. We hypothesized that size selectivity of harpacticoid copepod species is strongly related to body size. Because of morphological constraints, we expected smaller copepods to prefer smaller diatoms while larger copepods should be able to consume both small and large diatoms. We tested this hypothesis in four harpacticoid copepod species of varied body size: Tigriopus brevicornis, Harpacticus obscurus, Amphiascus minutus and Paramphiascella fulvofasciata. As food source we used two ¹³C labelled strains of the benthic diatom Seminavis robusta with a four-fold difference in cell biovolume.Three out of four harpacticoid species showed size selectivity: H. obscurus and A. minutus preferred the larger Seminavis cells, while P. fulvofasciata selected the smaller Seminavis cells. Based on monoclonal treatments, there was no clear preference found for T. brevicornis although there was a small preference for large cells in the mixed treatments. Except for P. fulvofasciata, all species showed a lower uptake when offered the mixed diet (both small and large cells). Although most species showed a size selectivity, our results suggest that this selectivity was not related to their body size. However, the only species that ate significantly more of small diatoms was characterised by comparatively small mouthparts in relation to its body size.     

Does secondary structure determine tertiary structure in proteins?

Is highly approximate knowledge of a protein's backbone structure sufficient to successfully identify its family, superfamily, and tertiary fold? To explore this question, backbone dihedral angles were extracted from the known three‐dimensional structure of 2,439 proteins and mapped into 36 labeled, 60° × 60° bins, called mesostates. Using this coarse‐grained mapping, protein conformation can be approximated by a linear sequence of mesostates. These linear strings can then be aligned and assessed by conventional sequence‐comparison methods. We report that the mesostate sequence is sufficient to recognize a protein's family, superfamily, and fold with good fidelity. Proteins 2005. © 2005 Wiley‐Liss, Inc.     

Egg size in relation to body size in rotifers: an indication of reproductive strategy?

Egg sizes and body sizes of 43 egg-bearing rotifer species of numerous, mostly tropical, general have been recorded. Larger absolute egg volumes have been found for larger rotifer species, but the increase was lower than expected in proportion to body size, i.e. the relative egg volume decreased with increasing body size. Obviously the relative investment per offspring is smaller in larger rotifer species.     

Phytoplankton communities and biomass size structure (fractionated chlorophyll “a”), along trophic gradients of the Basque coast (northern Spain)

Eutrophication is a major threat to coastal ecosystems. Within Europe, the Water Framework Directive (WFD) has established the need of developing methods of assessment. Bulk chlorophyll “a” is used world-wide as an indicator of eutrophication. However, the size structure of the phytoplankton communities has not been investigated, in detail, in relation to eutrophication pressures. This study investigates the suitability of fractionated chlorophyll “a” (<10 and >10 μm), as an indicator of eutrophication. Along the Basque coast (northern Spain) several water bodies, ranging from offshore waters to the heads of the estuaries, were surveyed during 2008. Physico-chemical conditions and chlorophyll “a” showed a distinct spatial gradient. Trophic richness increased towards the middle and inner parts of the estuaries, where nutrient inputs, from natural or anthropogenic sources, together with the residence time of the water are usually higher. In summer, phytoplankton biomass and abundance decreased, generally, in offshore and coastal waters; in estuaries, they tended to increase. The chlorophyll distribution within the two size fractions was coherent with the phytoplankton taxonomic composition. In summer, the relative abundance of small-sized cells (diatoms and non-siliceous taxa) increased. The relationships between size-fractionated chlorophyll and physico-chemical variables differed, when comparing the offshore and coastal waters, with the estuaries. In the offshore and coastal waters, a strong seasonality was observed; in estuaries, an important spatial component was found. Fractionated chlorophyll provided complementary useful information on anthropogenic pressures. However, more research is necessary to utilise this variable as a tool for ecological status assessment, within the WFD.     

Is the myonuclear domain size fixed?

It has been suggested that the number of myonuclei in a muscle fibre changes in proportion to the change in fibre size, resulting in a constant myonuclear domain size, defined as the cytoplasmic volume per myonucleus. The myonuclear domain size varies, however, between fibre types and is inversely related with the oxidative capacity of a fibre. Overall, the observations of an increase in myonuclear domain size during both maturational growth and overload-induced hypertrophy, and the decrease in myonuclear domain size during disuse- and ageing-associated muscle atrophy suggest that the concept of a constant myonuclear domain size needs to be treated cautiously. It also suggests that only when the myonuclear domain size exceeds a certain threshold during growth or overload-induced hypertrophy acquisition of new myonuclei is required for further fibre hypertrophy.     

Phylogenetic comparative methods and the geographic range size – body size relationship in new world terrestrial carnivora

Most recent papers avoid describing macroecological relationships and interpreting then without a previous control of non-independence in data caused by phylogenetic patterns in data. In this paper, we analyzed the geographic range size – body size relationship for 70 species of New World terrestrial Carnivora (fissipeds) using various phylogenetic comparative methods and simulation procedures to assess their statistical performance. Autocorrelation analyses suggested a strong phylogenetic pattern for body size, but not for geographic range size. The correlation between the two traits was estimated using standard Pearson correlation across species (TIPS) and four different comparative methods: Felsenstein's independent contrasts (PIC), autoregressive method (ARM), phylogenetic eigenvector regression (PVR) and phylogenetic generalized least-squares (PGLS). The correlation between the two variables was significant for all methods, except PIC, in such a way that ecological mechanisms (i.e., minimum viable population or environmental heterogeneity- physiological homeostasis), could be valid explanations for the relationship. Simulations using different O-U processes for each trait were run in order to estimate true Type I errors of each method. Type I errors at 5% were similar for all phylogenetic methods (always lower than 8%), but equal to 13.1% for TIPS. PIC usually performs better than all other methods under Brownian motion evolution, but not in this case using a more complex combination of evolutionary models. So, recent claims that using independent contrasts in ecological research can be too conservative are correct but, on the other hand, using simple across-species correlation is too liberal even under the more complex evolutionary models exhibited by the traits analyzed here.     

How to reach the right size?

Very little is known about how the size of an organism, or a specific tissue in an organism, is regulated. Coordinating and regulating the size of tissues is necessary for proper development, wound healing, and regeneration. Defects in a tissue-size regulation mechanism could lead to birth defects or cancer. In addition, there is a strong psychological aspect to some areas of tissue size regulation, as many cosmetic surgery procedures involve enlarging or reducing the size of some body parts. This review addresses the little bit that we know about size regulation. A key concept is that the size of a tissue is the size of the component cells multiplied by the number of those cells. This breaks the size regulation problem down to two parts. The size of cells can be regulated by nutrient sensing and secreted factors, and may have an upper limit due to an upper limit of a genome's ability to produce mRNA's and thus proteins. To regulate the number of cells in a tissue, there are several simple theoretical models involving secreted factors. In one case, the cells can secrete a characteristic factor and the concentration of the factor will increase with the number of cells secreting it, allowing the tissue to sense its own size. In another scenario, a specific cell secretes a limited amount of a factor necessary for the survival of a target population, and this then limits the size of the target population. There are currently several examples of secreted factors that regulate tissue size, including myostatin, which regulates the amount of muscles, leptin, which regulates adipose tissue, and growth hormone and insulin-like growth factors which regulate total mass. In addition, there are factors such as the found in Dictyostelium that regulate the breakup of a tissue into sub-groups. A better understanding of how these factors regulate size will hopefully allow us to develop new therapeutic procedures to treat birth defects or diseases that affect tissue size.