Specificity of Enzyme System Producing C6-Aldehyde in Tea Chloroplasts

The substrate specificity of enzyme system producing C₆-aldehyde in Thea chloroplasts was clarified with an entire series of synthesized positional isomers, in which the position of cis-1, cis-4-pentadiene system varies from C-3 to C-13 in C₁₈ fatty acid and geometrical isomers of linoleic acid. The structural requirement for the substrate of enzyme system producing C₆-aldehyde is the presence of cis-1, cis-4-pentadiene system between ω-6 and ω-10.     

Modeling of the phase equilibria of polystyrene in methylcyclohexane with semi-empirical quantum mechanical methods I

A method for calculating interaction parameters traditionally used in phase-equilibrium computations in low-molecular systems has been extended for the prediction of solvent activities of aromatic polymer solutions (polystyrene+methylcyclohexane). Using ethylbenzene as a model compound for the repeating unit of the polymer, the intermolecular interaction energies between the solvent molecule and the polymer were simulated. The semiempirical quantum chemical method AM1, and a method for sampling relevant internal orientations for a pair of molecules developed previously were used. Interaction energies are determined for three molecular pairs, the solvent and the model molecule, two solvent molecules and two model molecules, and used to calculated UNIQUAC interaction parameters, a _ij and a _ji . Using these parameters, the solvent activities of the polystyrene 90,000 amu+methylcyclohexane system, and the total vapor pressures of the methylcyclohexane+ethylbenzene system were calculated. The latter system was compared to experimental data, giving qualitative agreement. Figure Solvent activities for the methylcylcohexane(1)+polystyrene(2) system at 316 K. Parameters a _ij (blue line) obtained with the AM1 method; parameters a _ij (pink line) from VLE data for the ethylbenzene+methylcyclohexane system. The abscissa is the polymer weight fraction defined as ₂(x ₁)=(1–x ₁)M ₂/[x ₁ M ₁+(1–x ₁)M ₂], where x ₁ is the solvent mole fraction and M _i are the molecular weights of the components.An erratum to this article can be found at     

Sugar transport in Coprinus cinereus

Two transport systems for glucose were detected: a high affinity system with a K_m of 27 μM, and a low affinity system with a K_m of 3.3 mM. The high affinity system transported glucose, 2-deoxy-d-glucose (K_m = 26 μM), 3-O-methylglucose (K_m = 19 μM), d-glucosamine (K_m = 652 μM), d-fructose (K_m = 2.3 mM) and l-sorbose (K_m = 2.2 mM). All sugars were accumulated against concentration gradients. The high affinity system was strongly or completely inhibited by N-ethylmaleimide, quercetin, 2,4-dinitrophenol and sodium azide. The system had a distinct pH optimum (7.4) and optimum temperature (45°C). The low affinity system transported glucose, 2-deoxy-d-glucose (K_m = 7.5 mM), and 3-O-methylglucose (K_m = 1.5 mM). Accumulation again occurred against a concentration gradient. The low affinity system was inhibited by N-ethylmaleimide, quercetin and 2,4-dinitrophenol, but not by sodium azide. The rate of uptake by the low affinity system was constant over a wide temperature range (30–50°C) and was not much affected by pH; but as the pH of the medium was altered from 4.5 to 8.9 a co-ordinated increase in affinity for 2-deoxy-d-glucose (from 52.1 mM to 0.3 mM) and decrease in maximum velocity (by a factor of five) occurred. Both uptake systems were present in sporelings germinated in media containing sodium acetate as sole carbon source. Only the low affinity system could initially be demonstrated in glucose-grown tissue, although the high affinity system was restored by starvation in glucose-free medium. The half-time for restoration of high affinity activity was 3.5 min and the process was unaffected by cycloheximide. Addition of glucose to an acetate-grown culture inactivated the high affinity system with a half-life of 5–7.5 s. Addition of cycloheximide to an acetate-grown culture caused decay of the high affinity system with a half-life of 80 min. Regulation is thus thought to depend on modulation of protein activity rather than synthesis, and the kinetics of glucose, 2-deoxy-d-glucose and 3-O-methylglucose uptake would be consistent with there being a single carrier showing negative co-operativity.     

Organization and regulation of the conjugation genes of IncI1 plasmid ColIb-P9

The IncI₁ plasmid ColIb-P9 is among a group of related plasmids that encode the I₁ type of conjugation system. The I₁ system is known to include two morphologically distinct types of pilus, a DNA primase gene (sog) and an exclusion determinant (exc). Transposon mutagenesis and analysis of cloned fragments of ColIb were used to identify the location of these determinants with respect to an EcoRI restriction map. Also identified were the location of the origin of transfer (oriT) and a gene determining an EDTA-resistant nuclease, which is coordinately regulated with the transfer genes. The results indicate that the ColIb tra genes are separated into at least three Tra regions. The pleiotropic nature of transposon insertion mutations in two of these regions suggests that two positive regulators are required for expression of the transfer genes and evidence is also found for a trans-acting repressor. It is suggested that the I₁ conjugation system may have evolved following fusion of two distinct types of conjugative plasmid.     

Physiological role of tyrosine transport systems in Halobacterium salinarium

The quantitative content of three transport systems for aromatic amino acids in cells of Halobacterium salinarium was measured: the common system (K _m is about 10^-6 M) and two tyrosine-specific systems with high and low affinity (K _m is about 10^-8 and 10^-5 M, respectively). To determine the activity of each of three systems separately, a method was developed based on the selective phenylalanine effect on these activities. When phenylalanine exeeds [¹⁴C]tyrosine by four to sixforld, it inhibits competitively the activity of the common system, and its 50- to 100-fold molar excess is inhibitory in a non-competitive way for the specific high affinity system (HAT system). The specific low affinity system (LAT system) is practically insensitive to phenylalanine. The activities of tyrosine-specific transport systems are slightly dependent on the culture age, and the observed decrease in transport activity during growth is due mainly to the decreased content of the common system. The HAT system formation is regulated by the repression type, and the effectors are aromatic amino acids especially tyrosine itself. The physiological sense of the tyrosine transport system's multiplicity in H. salinarium is discussed.     

Development of a <Emphasis Type="Italic">Bacillus subtilis</Emphasis> expression system using the improved P<Emphasis Type="Italic">glv</Emphasis> promoter

Background  

B. subtilis is an important organism in the biotechnological application. The efficient expression system is desirable in production of recombinant gene products in B. subtilis. Recently, we developed a new inducible expression system in B. subtilis, which directed by B. subtilis maltose utilization operon promoter P _glv . The system demonstrated high-level expression for target proteins in B. subtilis when induced by maltose. However, the system was markedly repressed by glucose. This limited the application of the system as a high-expression tool in biotechnology field. The aim of this study was to further improve the P _glv promoter system and enhance its expression strength.     

Water dependent and water independent fluxes of potassium in exuding root systems of Ricinus communis

Summary The flux of water, , to the xylem of exuding root systems of Ricinus communis was controlled using a range of mannitol concentrations permitting the influence of this water flux on the potassium flux, f _K, to be studied. The relationship between and f _K thus obtained was investigated, for a number of external concentrations of potassium, Cm, supplied as potassium nitrate. An analysis of these data indicated the presence of a water dependent and a water independent f _K both of which varied with Cm. The water dependent f _K shows a parabolic relationship with Cm for Cm values <1 mM followed by a sharp inflection and decline at higher Cm values whereas the water independent f _K shows an hyperbolic relationship over the same range of Cm values.Uptake of potassium by exuding root systems was measured and shown to be dependent on the solute potential of the medium. The uptake was also shown to exhibit a dual absorption isotherm the kinetics of which indicate a low Km system (system 1) and a high Km system (system 2). The Km value obtained for system 1 is very similar to that obtained for the water independent f _K. It is postulated that the water independent f _K is contributed by that portion of f _K arriving in the stele via the cortical symplast and is directly dependent on Cm. The water dependent f _K is contributed by those ions moved across the root in response to centripetal water movement through the cortical cell walls.     

油包水微乳液中抗体酶催化布洛芬酯选择性水解的酶学特性

根据过渡态理论设计和合成了能诱导产生催化选择性水解布洛芬甲酯的催化抗体的四面体硫酸盐半抗原,并与牛血清白蛋白(BSA)偶联制备成免疫源,通过免疫手段成功筛选出具有加速选择性水解生成S-布洛芬的特异性催化抗体.其Kcat,app/Kuncat,app达1.6x104.进一步地将催化抗体运用到W/O微乳体系(反胶束)中进行布洛芬酯的选择性水解研究,其动力学研究证明其催化过程同样遵循Michaelis.Menten方程.考察了pH值和温度对催化初速度影响,Wo(体系中水和琥珀酸二辛酯磺酸钠(AOT)的摩尔比)对催化初速度影响呈现为钟罩型,最适的Wo.为21.     

A method for simultaneous determination of (I) the blood flows to the organs and (II) the cardiac output

A method is presented for the simultaneous determination of (i) the blood flow to the organs and (ii) the cardiac output. Part I of the paper deals with the analysis of ann compartment (organ) vascular system model. The data, employed in the analysis, consists of continuous monitoring of the amounts of indicatorM _i in the organs (or compartments). An analysis for determination of the cardiac output and the absolute flows to the organs is presented. Since it is difficult to isolate certain organ systems and measure the amounts of indicator in them exclusively, a more realistic model of then compartment vascular system is presented in Part II. Herein, the analysis has accounted for the finite transit time, of the indicator, from one organ system to another. Further, estimation theory is employed to make estimates of blood flow to different organs by taking note of (i) the measurement errors due to the detectors' monitoring (for an organ system) some combination ofM _i 's instead of theM _i for the particulari ^th organ and (ii) noise uncertainties introduced by the measuring instruments.     

Non-destructive measurement of dormant bud respiration rates

The lack of an indicator of the state of bud development during the dormant period has been a major difficulty in studying the effects of winter chilling on subsequent shoot growth and flowering. We considered that respiration rate (R _D ) might provide such an index, so developed a technique for the non-destructive measurement of the R _D of individual dormant buds of kiwifruit (Actinidia deliciosa). A closed configuration gas exchange system was used. The low R _D of dormant buds required the use of an unusually small system volume. As a consequence, it was necessary to modify the conventional closed system so that most of the system volume could be sampled for analysis. Increases in CO₂ concentration during a measurement were determined by injecting gas samples into a stream of air flowing through an infrared gas analyser. The technique was found to be reliable even at R _D as low as 20 pmol s-1. Error analysis showed that under normal operating conditions the coefficient of variation was approximately 3 %. With two operators, measurements could be made at the rate of one bud every four minutes. The ability to make non-destructive measurements has the advantage of enabling us to make sequential measurements on individual buds and monitor subsequent development. The system could be readily adapted to other woody fruit species, providing that gas-tight seals can be established on individual buds. Use of the system is illustrated by measuring the temperature response of the R _D of dormant buds grown under contrasting conditions. All buds showed increasing R _D with increasing temperature in the range 15 to 25 °C. Buds which had grown in the coolest region, where bud break is usually the earliest, had the highest R _D when measured during early spring. This revised version was published online in September 2006 with corrections to the Cover Date.     

Properties of solution of the diffusion-reaction equation

An arbitrary set of chemical reactions is considered to occur among chemical speciesX _i . In a closed uniform reaction system certain linear combinations of the concentrations of theX _i are constants. The general construction of all such linear combinations with non-negative coefficients is given in terms of the molecular formulae for theX _i . It is shown that to each such linear combination there corresponds another which is a harmonic function when the reactions take place in an open spatially distributed stationary reaction system of arbitrary shape. Under the usual boundary conditions these harmonic functions are constants. With some restrictions upon the diffusion and permeability coefficients these constants are evaluated. This evaluation is the basis for relations between the total concentration of a given chemical group (e.g., the sum of the concentrations of a free molecule, or ion, and its various bound forms) in the reaction system, and in the surrounding medium. The bearing of these relations on apparent active transport is noted and illustrated.     

A mathematical model for the synthesis of Gly-Phe by papain in an aqueous-organic system

The synthesis of the protected dipeptide BocGlyPheOMe, has been modellised when working in an aqueousorganic biphasic system, with papain as a catalyst. The mathematical model takes into account that one of the substrates, PheOMe, has parallel hydrolysis reactions and that the reaction only takes place in the aqueous phase while the whole reaction system is biphasic. The reaction system has been modellised when working in batch as well as when working in fed-batch mode, achieving a good prediction of the product evolution for both working strategies. When working in fed-batch mode, the extension of the undesired parallel reactions has been diminished, the model has been used for a computer aided optimisation of the addition sequence of PheOMe. The results obtained led to a process operation strategy with a compromise between yield and productivity.List of Symbols [i] concentration of any component i - [i] _aq concentration of i in the aqueous phase - [i] _bi concentration of i in the biphasic system - [E] ₀ initial concentration of enzyme - k _e, k_q first order kinetic constants - K _A, K_B equilibrium constants - r _m maximum rate of reaction This worked was financed by the Interministerial Commission for Science and Technology (CICYT)from the Spanish Government under projects number BIO/88-370 and SAF92-0261-CO2-02.     

Solutions to a degenerate system of parabolic equations from marine biology

Summary A system of parabolic and ordinary differential equations u _t = a ² u _xx + F(u, v, w), v _t = a ² v _xx + G(u, v, w),w _x = – k(u)w is studied which has been proposed by Radach and Maier-Reimer for the dynamics of phytoplankton and nutrient in dependence of light intensity. It is shown that there is a unique solution to this system satisfying given initial and boundary conditions. The solution depends continuously on the data. For specific nonlinearities F, G, and k bounds for the solutions are given.     

Kinetics of batch-wise enzymatic cycling system for mass production of chiral compound

Kinetics of batch-wise enzymatic cycling system (oxidoreductase-catalyzed reaction system involving enzyme-coupled cofactor regeneration) has been studied covering a broad range of the conserved total cofactor concentration, [C]₀ (=NAD(P)⁺?+?NAD(P)H), based on reasonable several assumptions. It is composed of two elementary reactions, i.e. product synthesis reaction and cofactor regeneration reaction, both of which have been expressed by Michaelis–Menten type rate equations. A novel dimensionless variable, r, has been introduced, which is defined as the concentration of one of the two cofactor components, [X] (NADH⁺ or NADPH⁺), divided by [C]₀, i.e. r .e[X]/[C]₀. The following results have been obtained. (1) The fundamental equation of the batch-wise enzymatic cycling system has been transformed to a differential equation whose formula is: dr/dT?=?N(r)/D(r) (N(r) and D(r) are quadratic equations of r having different coefficients). (2) It has been elucidated that the batch-wise enzymatic cycling system has two phases, an early short transient phase followed by a long phase in quasi-steady state (QSS). (3) In the enzymatic cycling system, r converges to a definite level regardless of any initial value of r. (4) In QSS, the definite level of r nearly equals the singular solution, r_singular, of the differential equation. (5) The actual rate of the targeted product (chiral compound) formation can be calculated by Michaelis–Menten equation in which the cofactor concentration is [C]₀×r_singular instead of [C]₀. r_singular has been proposed to name “redistribution factor”. (6) It is recommended that the “unit” of the cofactor regeneration enzyme be 2–3 times more used than the “unit” of the synthesis enzyme and that [C]₀ be 15–25 times more than the K_m value. Four special cases relating to the batch-wise enzymatic cycling system have been discussed.     

Transport of glucose,fructose and sucrose by Streptanthus tortuosus suspension cells

Streptanthus tortuosus Kell. suspension cells will grow in a medium with sucrose as carbohydrate source. It was investigated whether the cells are able to take up sucrose or whether sucrose has to be hydrolyzed to glucose and fructose which eventually are taken up. The detailed quantitative analysis of sugar-uptake rates in the low concentration range up to 1 mM showed the following features: (i) There is definitely no sucrose-uptake system working in the low concentration range; any uptake of radioactivity from labelled sucrose proceeds via hydrolysis of sucrose by cell-wallbound invertase. (ii) Hexoses are taken up by two systems, a glucose-specific system with a K _m of 45 M and a high V _max for glucose and a K _m of 6 mM and a low V _max for fructose, and a fructosespecific system with a K _m of 500 M and high a V _max for fructose and a K _m of 650 M and a low V _max for glucose. (iii) There is a more than tenfold preference for uptake of the fructose derived from sucrose versus uptake of free fructose, with the result that the kinetic disadvantage of the fructoseuptake system compared to the glucose-uptake system is diminished if sucrose is supplied as the carbon source. It is speculated that invertase might work as an enzyme aiding in fructose transport.Abbreviations FCCP carbonylcyanide-p-trifluoromethoxyphenylhydrazone - FW fresh weight     

THE INFLUENCE OF MATING SYSTEM AND OVERLAPPING GENERATIONS ON EFFECTIVE POPULATION SIZE

The effective population size (N_e) depends strongly on mating system and generation time. These two factors interact such that, under many circumstances, N_e is close to N/2, where N is the number of adults. This is shown to be the case for both simple and highly polygynous mating systems. The random union of gametes (RUG) and monogamy are two simple systems previously used in estimating N_e, and here a third, lottery polygyny, is added. Lottery polygyny, in which all males compete equally for females, results in a lower N_e than either RUG or monogamy! Given nonoverlapping generations the reduction is 33% for autosomal loci and 25% for sex-linked loci. The highly polygynous mating systems, harem polygyny and dominance polygyny, can give very low values of N_e/N when the generation time (T) is short. However, as T is lengthened, N_e approaches N/2. The influence of a biased sex ratio depends on the mating system and, in general, is not symmetrical. Biases can occur because of sex differences in either survival or recruitment of adults, and the potential for a sex-ratio bias to change N_e is much reduced given a survival bias. The number of juveniles present also has some influence: as the maturation time is lengthened, N_e increases.     

The Predictive Power of R 0 in an Epidemic Probabilistic System

An important issue in theoretical epidemiology is the epidemic thresholdphenomenon, which specify the conditions for an epidemic to grow or die out.In standard (mean-field-like) compartmental models the concept of the basic reproductive number, R ₀, has been systematically employed as apredictor for epidemic spread and as an analytical tool to study thethreshold conditions. Despite the importance of this quantity, there are nogeneral formulation of R ₀ when one considers the spread of a disease ina generic finite population, involving, for instance, arbitrary topology ofinter-individual interactions and heterogeneous mixing of susceptible andimmune individuals. The goal of this work is to study this concept in ageneralized stochastic system described in terms of global and localvariables. In particular, the dependence of R ₀ on the space ofparameters that define the model is investigated; it is found that near ofthe `classical' epidemic threshold transition the uncertainty about thestrength of the epidemic process still is significantly large. Theforecasting attributes of R ₀ for a discrete finite system is discussedand generalized; in particular, it is shown that, for a discrete finitesystem, the pretentious predictive power of R ₀ is significantlyreduced.     

The effect of the locus pstB on phosphate binding in the phosphate specific transport (PST) system of Escherichia coli

Summary The periplasmic phosphate binding protein is a product of the phoS gene and is an essential component of the phosphate specific transport (PST) system, which mediates Pi uptake in Escherichia coli. The binding of Pi to periplasmic protein(s) and the kinetic parameters of Pi uptake were studied in phoT and pstB mutants of E. coli. These mutants are impaired in Pi uptake but have a periplasmic Pi-binding protein whose Pi-binding acpacity was estimated by the retention kinetics. The Pi-binding activity in two pstB mutants was found to be weaker as compared to phoT9 and the wild type. The K _D values for Pi binding to periplasmic protein were determined by equilibrium dialysis. In the pstB mutants the K _D value was found to be 9–31 times higher than the values obtained for the wild type and the phoT mutant. The apparent K _m values for Pi uptake in one pstB mutant is 14.3 times higher than in the wild type. V _max of the mutant is 8.3 times lower that of the wild type. The data indicate that pstB, an essential gene of the PST transport system, is promoting the binding capacity of the Pi-binding protein.Abbreviations AP alkaline phosphatase - Pi inorganic orthophosphate - Km kanamycin     

An example of a regular inbreeding system with cubic ancestral growth that preserves some genetic variability

A specific regular inbreeding system of quadruple half-second cousin mating is considered. A regular inbreeding system can be thought of as a graph which satisfies certain natural homogeneity properties. Random walks X _n and Y _n are introduced on the nodes of the graph; the event {X _n=Y_n} is a renewal event by the homogeneity properties. In Arzberger (1985) it is shown that 1) graphs associated with left cancellative semigroups are regular, and 2) for regular systems, the population becomes genetically uniform if and only if the event {X _n=Y_n} is recurrent. In Arzberger (1986) the system of quadruple half-second cousin mating is associated with a cancellative semigroup, thus the system is regular. In this paper we show that 1) A_n is asymptotically of the form cn ³, where A _n is the number of ancestors n generations into the past, 2) {X _n=Y_n} is not recurrent (this is shown by associating (X _n, Y _n) with a random walk in Z ³, 3) P[X _3n =Y _3n ] is asymptotically of the form cn ^–3/2. Thus, in this example, genetic heterogeneity is maintained, with a cubic rate of growth for A_n, not by an exponential growth rate, as in all previous examples of regular inbreeding systems in which genetic heterogeneity is maintained.     

Heterologous protein production in Escherichia coli using the propionate-inducible pPro system by conventional and auto-induction methods

We examined expression of two plant genes encoding coclaurine N-methyltransferase (CMT) and norcoclaurine synthase (NCS) in Escherichia coli from the Salmonella enterica prpBCDE promoter (P_prpB) and compared it to that from the strongest IPTG-inducible promoter, P_T7. In contrast to our previous study showing slightly higher production of green fluorescent protein (GFP) from the pPro system compared to that from the T7 system, production of two plant proteins CMT and NCS from P_prpB was 2- to 4-fold higher than that from P_T7. Unlike P_T7, expression from P_prpB did not reduce cell growth even when highly induced, indicating that this propionate-inducible system is more efficient for overproduction of proteins that result in growth inhibition. In an auto-induction experiment, which does not require monitoring the culture or adding inducer during cell growth, the pPro system exhibited much higher protein production than the T7 system. These results strongly indicate that the pPro system is well-suited for overproduction of recombinant proteins.