Similar composition but differential stability of mineral retained organic matter across four classes of clay minerals

Adsorption of dissolved organic compounds onto mineral surfaces is increasingly recognized as a significant, if not dominant, carbon stabilisation mechanism in many soils. By utilising carbon-13 enriched dissolved organic carbon (DOC) source materials in a repeated leaching-sorption-incubation study, we show here that the biochemical composition of mineral-retained organic matter (OM) is similar across four different classes of clay minerals but the quantity and stability of this OM is both a function of source material and clay mineralogy. Three to eight times as much carbon was retained on a mass basis when the same amount of DOC derived from eucalyptus versus wheat litter was applied, and the retained wheat-derived OM was up to 2.4 times more degradable than that of the eucalyptus source. For both litter types, carbon retention across the clay types was not significantly different; whereas, the stability of the retained OM was different but depended on which litter extract had been applied. The wheat-derived DOC was more stable when retained by allophane and oxides than by illite and smectite. Solid-state ¹³C NMR spectroscopic results indicated that despite large compositional differences in both source litter and resultant DOC, the composition of the mineral-retained OM was similar across clay classes with lignin-derived aromatic and carboxylic compounds dominating. Differences in the amount of carbon retained were related to differences in the proportions of aromatic, phenolic and carboxylic C in the DOC produced from the two litter sources. Differences in the stability across the clay classes were correlated with the abundance of metals and short-range ordered minerals. These results suggest that whenever reactive mineral surfaces and metals are present in a soil, a similar form of relatively unaltered litter derived OM can be adsorbed but that the longer term stability of sorbed OM, and thus in situ composition, will be a function of the mineralogy (reactivity) of the specific minerals involved in the binding process.     

Clay Mineralogy of Central Victorian (Creswick) Soils: Clay Mineral Contents as a Possible Tool of Environmental Indicator

The clay mineralogy and heavy metal/metalloid (As, Pb and Cu) contents of soils developed on the various rock units in a central highlands environment in Victoria (Creswick, Australia) have been investigated. The clay minerals identified showed an order of abundance as: kaolinite ? illite > smectite > mixed-layer (ML) ≈ vermiculite. The soil clay mineralogy did not change systematically with depth (0～ 10, 10～ 20 and 20～ 30 cm) and showed large variations spatially. The high proportion of kaolinite was probably due to the removal of 2:1 phyllosilicates by the formation of 1:1 kaolinite through weathering, which also reduced the cation exchange capacity (CEC) and electrical conductivity (EC, soil: water ratio of 1:5) of soils by aging. Soils were classified as silty loam to loam with a low clay size (≤ 2μ m) fraction. The soils were acidic to moderately acidic with pH ranging from 4.5 to 7.1, averaging 5.7. Concentrations of As, Pb, and Cu (average values 24.3, 16.7 and 11.0 mg/kg, respectively) did not show an association with the clay mineral contents except vermiculite. The occurrence of smectite and mixed-layer clay contents, although far lower than kaolinite and illite, contributed significantly to CEC of soils. The study area was affected by mining, high natural background As values dominate the area and the role of clay minerals in fixation of metalloid/metals was found to be less significant. Low organic matter content (average ～ 6.5%), low soil surface area (average ～ 1.0 m²/g) and the high proportion of kaolinite mineral content result in a limited ability to fix heavy metals. The role of Fe oxides appeared to be a key influence in the fixation of As and other potentially toxic metals, rather than the clay minerals, and therefore requires further research. This work highlighted the importance of the determination of types and amounts of clay minerals of natural soils in environmental management.     

Short-term effects of biological and physical forces on aggregate formation in soils with different clay mineralogy

The mechanisms resulting in the binding of primary soil particles into stable aggregates vary with soil parent material, climate, vegetation, and management practices. In this study, we investigated short-term effects of: (i) nutrient addition (Hoagland's solution), (ii) organic carbon (OC) input (wheat residue), (iii) drying and wetting action, and (iv) root growth, with or without dry–wet cycles, on aggregate formation and stabilization in three soils differing in weathering status and clay mineralogy. These soils included a young, slightly weathered temperate soil dominated by 2:1 (illite and chlorite) clay minerals; a moderately weathered soil with mixed [2:1 (vermiculite) and 1:1 (kaolinite)] clay mineralogy and oxides; and a highly weathered tropical soil dominated by 1:1 (kaolinite) clay minerals and oxides. Air-dried soil was dry sieved through a 250 m sieve to break up all macroaggregates and 100 g-subsamples were brought to field capacity and incubated for 42 days. After 14 and 42 days, aggregate stability was measured on field moist and air-dried soil, to determine unstable and stable aggregation respectively. In control treatments (i.e., without nutrient or organic matter addition, without roots and at constant moisture), the formation of unstable and stable macroaggregates (> 250 m) increased in the order: 2:1 clay soil < mixed clay soil < 1:1 clay soil. After 42 days of incubation, nutrient addition significantly increased both unstable and stable macroaggregates in the 2:1 and 1:1 clay soils. In all soils, additional OC input increased both unstable and stable macroaggregate formation. The increase in macroaggregation with OC input was highest for the mixed clay soil and lowest for the 1:1 clay soil. In general, drying and wetting cycles had a positive effect on the formation of macroaggregates. Root growth caused a decrease in unstable macroaggregates in all soils. Larger amounts of macroaggregates were found in the mixed clay and oxides soil when plants were grown under 50% compared to 100% field capacity conditions. We concluded that soils dominated by variable charge clay minerals (1:1 clays and oxides) have higher potential to form stable aggregates when OC concentrations are low. With additional OC inputs, the greatest response in stable macroaggregate formation occurred in soils with mixed mineralogy, which is probably a result of different binding mechanisms occurring: i.e., electrostatic bindings between 2:1 clays, 1:1 clays and oxides (i.e. mineral-mineral bindings), in addition to OM functioning as a binding agent between 2:1 and 1:1 clays.     

Biogenic Catalysis of Soil Formation on Mars?

The high iron abundance and the weak ferric iron spectral features of martian surface material are consistent with nanophase (nm-sized) iron oxide minerals as a major source of iron in the bright region soil on Mars. Nanophase iron oxide minerals, such as ferrihydrite and schwertmannite, and nanophase forms of hematite and goethite are formed by both biotic and abiotic processes on Earth. The presence of these minerals on Mars does not indicate biological activity on Mars, but it does raise the possibility. This work includes speculation regarding the possibility of biogenic soils on Mars based on previous observations and analyses. A remote sensing goal of upcoming missions should be to determine if nanophase iron oxide minerals, clay silicates and carbonates are present in the martian surface material. These minerals are important indicators for exobiology and their presence on Mars would invoke a need for further investigation and sample return from these sites.     

Phosphorus–iron interaction in sediments: can an electrode minimize phosphorus release from sediments?

All restoration strategies to mitigate eutrophication depend on the success of phosphorus (P) removal from the water body. Therefore, the inputs from the watershed and from the enriched sediments, that were the sink of most P that has been discharged in the water body, should be controlled. In sediments, iron (hydr)oxides minerals are potent repositories of P and the release of P into the water column may occur upon dissolution of the iron (hydr)oxides mediated by iron reducing bacteria. Several species of these bacteria are also known as electroactive microorganisms and have been recently identified in lake sediments. This capacity of bacteria to transfer electrons to electrodes, producing electricity from the oxidation of organic matter, might play a role on P release in sediments. In the present work it is discussed the relationship between phosphorus and iron cycling as well as the application of an electrode to work as external electron acceptor in sediments, in order to prevent metal bound P dissolution under anoxic conditions.     

Microbial reduction of structural iron in interstratified illite-smectite minerals by a sulfate-reducing bacterium

Clay minerals are ubiquitous in soils, sediments, and sedimentary rocks and could coexist with sulfate‐reducing bacteria (SRB) in anoxic environments, however, the interactions of clay minerals and SRB are not well understood. The objective of this study was to understand the reduction rate and capacity of structural Fe(III) in dioctahedral clay minerals by a mesophilic SRB, Desulfovibrio vulgaris and the potential role in catalyzing smectite illitization. Bioreduction experiments were performed in batch systems, where four different clay minerals (nontronite NAu‐2, mixed‐layer illite‐smectite RAr‐1 and ISCz‐1, and illite IMt‐1) were exposed to D. vulgaris in a non‐growth medium with and without anthraquinone‐2,6‐disulfonate (AQDS) and sulfate. Our results demonstrated that D. vulgaris was able to reduce structural Fe(III) in these clay minerals, and AQDS enhanced the reduction rate and extent. In the presence of AQDS, sulfate had little effect on Fe(III) bioreduction. In the absence of AQDS, sulfate increased the reduction rate and capacity, suggesting that sulfide produced during sulfate reduction reacted with the phyllosilicate Fe(III). The extent of bioreduction of structural Fe(III) in the clay minerals was positively correlated with the percentage of smectite and mineral surface area of these minerals. X‐ray diffraction, and scanning and transmission electron microscopy results confirmed formation of illite after bioreduction. These data collectively showed that D. vulgaris could promote smectite illitization through reduction of structural Fe(III) in clay minerals.     

铁矿物强化厌氧氨氧化效能及其微生物机制研究进展

自然界中的氮循环与铁循环相互交联,参与氮循环的厌氧氨氧化（anaerobic ammonium oxidation,anammox）菌的生长代谢及活性发挥也与铁元素紧密关联。自然界广泛存在的铁矿物因具有运行成本低廉、稳定性好、二次污染小等优势,在污水处理领域得到广泛应用。在厌氧氨氧化脱氮系统中引入适量铁矿物,不仅有助于促进anammox菌和铁还原菌的富集,提高功能基因丰度和相关酶活性,还可能通过影响污泥浓度、血红素c含量、胞外聚合物含量和颗粒化程度,改善污泥性能和提高厌氧氨氧化系统的稳定性。同时,铁矿物具有促进体系多种氮素转化途径（如anammox、铁自养反硝化、铁氨氧化、异化硝酸盐还原成铵和反硝化）相耦合的潜能,可以提高anammox污水处理系统的总氮去除率。本文基于铁矿物在促进污水生物脱氮方面的良好性能及其在anammox系统中的变化,从脱氮效能、污泥特性、微生物特征及酶活性等方面,系统综述了铁矿物对厌氧氨氧化系统的强化作用机制,并从anammox菌对铁矿物的利用及铁元素的摄取角度展望了后续的研究方向,以期为铁矿物强化厌氧氨氧化系统的实际应用提供理论和技术指导。     

Pyrolysis-field ionization mass spectrometry of agricultural soils and humic substances: Effect of cropping systems and influence of the mineral matrix

Whole soil samples, extracted humic substances, the corresponding fulvic (FA) and humic acids (HA) and the extraction residues (humins) from long-term, agricultural test plots were investigated by in-source pyrolysis-field ionization mass spectrometry (Py-FIMS). For the soils distinct differences in the chemical composition of the organic matter in differently managed fields were observed. The FI mass spectra of the extracted humic substances gave complementary chemical information, as they cover a larger mass range compared to the whole soil spectra. The chemical, structural information of the conventional alkaline extraction residues was demonstrated by Py-FIMS spectra to be similar to that of the related soil samples. Influences of mineral matrix to organic matter ratios were studied on mixtures of extracted humic substances with defined mineral components such as quartz, basalt, iron oxide (Fe₂O₃), Ca-montmorillonite, kaolinite and illite. It was shown that in these mixtures the number of mass signals detected and the covered mass range decreased, when organic carbon concentrations (C_org) in this synthetic mineral matrix dropped below 2% (w/w). Limitations in the direct application of Py-FIMS might arise in the case of natural soil samples with C_org concentrations below 0.5% (w/w), high contents of swelling clay minerals and iron oxides. ei]{gnR}{fnMerckx}     

Biosorption of phosphate from synthetic wastewater by biosolids

The aim of this study was to determine the potential of phosphate (P) removal from wastewater by biosolids prepared by the immobilization of P-accumulating bacteria onto organic bentonite. Organic bentonite was prepared by treating bentonite clay with quaternary ammonium salt — cetyltrimetylammonium (CTA) bromide. Cation exchange capacity (CEC) of the bentonite was found to be 179.0 meq/100 g of the dry bentonite. The CTA occupied ca. 175% of the CEC. Modification of bentonite with CTA in amounts higher than 55% of the CEC resulted in the change of zeta potential of particles from negative to positive. Only in reactors containing organic bentonite samples occupied with 3.5 and 28% of the CEC was P efficiently removed from wastewater by combined adsorption and bacterial uptake in the biomass. Organic bentonite samples with higher CTA loadings (from 55 to 175% of the CEC) showed bactericidal effects. To enhance P removal from wastewater in the aerated biological system, biosolids consisting of P-accumulating bacteria and organic bentonite can be used, but special attention should be given to the configuration of sorbed CTA molecules and its potential desorption.     

Pulsed Electrokinetic Removal of Chromium,Mercury and Cadmium from Contaminated Mixed Clay Soils

Electrokinetic remediation (EKR) processes are energy intense systems as they are mainly run under continuous constant current supply mode. In this study, pulsed electrokinetic remediation (PEKR) technique was employed for the removal of Cd, Hg and Cr from mixed contaminated natural clay and bentonite soils. The effects of voltage gradient, pulse duty cycle and bentonite/clay ratio on the simultaneous removal efficiencies of the heavy metals and specific energy consumption were investigated. Fifteen (15) PEKR experiments were conducted according to Box–Behnken design (BBD) with each experiment allowed to continuously run for 21 days. Increase in the proportion of the bentonite significantly decreased the removal efficiency of the heavy metals while having insignificant effect on the energy consumption. Conversely, increase in both voltage gradient and pulse duty cycle increased the heavy metals removal efficiencies, though at the expense of increase in energy consumption due to combine effects of increase in the soil electrical conductivity, amount of current needed to sustain the applied voltage gradient as well as the raise in the soil pH. The maximum achievable removal efficiencies for Cd, Hg and Cr were 21.87, 78.06 and 89.64% respectively. The specific energy consumption significantly increased from the range of 91.67–154.17 kwh/m³ to 1700–2441.67 kwh/m³ as a result of combined effect of increasing voltage gradient and pulse duty cycle. This demonstrated that effective PEKR could be achieved with significance reduction in the energy consumption via appropriate selection of pulse duty and voltage gradient for clay soils of different proportion of montmorillonite.     

Bio-current as an indicator for biogenic Fe(II) generation driven by dissimilatory iron reducing bacteria

Microbial reduction of insoluble iron minerals by dissimilatory iron reducing bacteria (DIRB) is an important environment process in the iron biogeochemical cycle. We reported that the bio-current generated from oxidation of organic matter by these bacteria in the presence of iron oxides can be used as an indicator for microbial dissolution of insoluble iron oxides. Bioelectrochemical experiments were conducted to investigate the effects of the specific bacteria and the phase identity of iron oxides on bio-current generation by recording the current response as a result of a poised constant potential. Experimental results indicated that the bio-current generation can be greatly enhanced by iron oxide addition under all the conditions varying in the type of pure culture or iron oxide. The increase in the bio-current was linearly correlated with the increased concentration of biogenic Fe(II) detected either by chemical analysis or cyclic voltammetry (CV) tests. This can be understood based on the proposed mechanism that the Fe(II)/Fe(III) couple functions as the electron mediator shuttling electrons from the microbes to the electrodes.     

新疆其木干剖面中新世-上新世沉积物粘土矿物特征及其古气候指示意义

为重建新疆其木干地区中新世-上新世古气候,采用X射线衍射、扫描电子显微分析方法,对该区中新世-上新世沉积物中粘土矿物的相对含量、组合类型及显微形貌等进行了研究。结果显示:中新世早期-早中新世中期,沉积物中粘土矿物以伊利石和绿泥石为主,含少量的蒙脱石,表明以干旱气候为特征;晚中新世中期-早中新世晚期,伊利石的相对含量逐渐降低,且含有少量的蒙脱石和高岭石,指示相对温湿的气候条件;中新世晚期的粘土矿物组分与中新世早期相似,以伊利石和绿泥石为主,指示古气候以干旱为主导;晚中新世晚期至上新世伊利石相对含量降低,而蒙脱石和高岭石的相对含量升高,但由于粘土矿物中伊利石、绿泥石的含量仍然较高,指示古气候仍然以干旱为主导,但相对于中新世而言,这段时期为相对湿润期。以上结果表明,新疆其木干地区中新世-上新世古气候以干旱为主,并且气候经历了干旱-相对湿润-干旱-相对湿润的演化过程,但总体而言,本区中新世比上新世要更为干旱。     

Toxicity of cadmium to twoStreptomyces species as affected by clay minerals

Summary The effect of cadmium on the growth ofStreptomyces rimosus andS. bottropensis (both isolated from soil) was investigated. The modifying effect of the presence of the clay minerals kaolinite, bentonite and vermiculte on Cd toxicity was also included. After four days no growth was observed at 100 ppm CdCl₂ ofS. bottropensis and at 150 ppm in case ofS. rimosus. After six days some growth ofS. rimosus occurred at 150 ppm CdCl₂ and ofS. bottropensis at 100 ppm. Addition of the three clay minerals decreased the Cd toxicity considerably.     

Stabilization of Soil Organic Matter: Association with Minerals or Chemical Recalcitrance?

Soil organic matter (OM) can be stabilized against decomposition by association with minerals, by its inherent recalcitrance and by occlusion in aggregates. However, the relative contribution of these factors to OM stabilization is yet unknown. We analyzed pool size and isotopic composition (¹⁴C, ¹³C) of mineral-protected and recalcitrant OM in 12 subsurface horizons from 10 acidic forest soils. The results were related to properties of the mineral phase and to OM composition as revealed by CPMAS ¹³C-NMR and CuO oxidation. Stable OM was defined as that material which survived treatment of soils with 6 wt% sodium hypochlorite (NaOCl). Mineral-protected OM was extracted by subsequent dissolution of minerals by 10% hydrofluoric acid (HF). Organic matter resistant against NaOCl and insoluble in HF was considered as recalcitrant OM. Hypochlorite removed primarily ¹⁴C-modern OM. Of the stable organic carbon (OC), amounting to 2.4–20.6 g kg⁻¹ soil, mineral dissolution released on average 73%. Poorly crystalline Fe and Al phases (Fe_o, Al_o) and crystalline Fe oxides (Fe_d−o) explained 86% of the variability of mineral-protected OC. Atomic C_p/(Fe+Al)_p ratios of 1.3–6.5 suggest that a portion of stable OM was associated with polymeric Fe and Al species. Recalcitrant OC (0.4–6.5 g kg⁻¹ soil) contributed on average 27% to stable OC and the amount was not correlated with any mineralogical property. Recalcitrant OC had lower Δ¹⁴C and δ¹³C values than mineral-protected OC and was mainly composed of aliphatic (56%) and O-alkyl (13%) C moieties. Lignin phenols were only present in small amounts in either mineral-protected or recalcitrant OM (mean 4.3 and 0.2 g kg⁻¹ OC). The results confirm that stabilization of OM by interaction with poorly crystalline minerals and polymeric metal species is the most important mechanism for preservation of OM in these acid subsoil horizons.     

Retention of Metals Leached From Municipal Solid Waste Incineration (MSWI) Bottom Ashes in Soils

Utilization of bottom ash in road construction may lead to a release of contaminants that can affect the soil of the swales constructed along these roads. Column tests were performed to evaluate the retention behavior of Cu, Cr, Zn, and Pb, originating from municipal solid waste incineration (MSWI) bottom ash leachate, in two substrates: peat and mould (a cultural soil). A chemical sequential extraction method was used to predict the risk associated with the release of the retained elements with modifications of environmental conditions. Apart from the dissolution of organic matter (OM), ash leachate properties hindered the metal transport from peat. Mould was efficient only in removing Zn, making it a less favorable substrate for the leachate control along the roads. Readily soluble forms made up a minor fraction of the retained metals in peat, reducing the risk of metal release due to ion exchange and pH drop. Changes in redox potential might be the main cause of Zn desorption from peat as the Fe-Mn oxides were the main scavengers for this metal. Oxidation of OM would be the primary reason of Cu and Cr release, while for Pb both fractions (Fe-Mn oxides and OM) might equally contribute to the metal discharge.     

Controls on the origin and cycling of riverine dissolved inorganic carbon in the Brazos River, Texas

Rivers draining watersheds that include carbonate bedrock or organic matter (OM)-rich sedimentary rocks frequently have ¹⁴C-depleted dissolved inorganic carbon (DIC) relative to rivers draining carbonate- and OM-free watersheds, due to dissolution of carbonate and/or decomposition of ancient OM. However, our results from a subtropical river, the Brazos River in Texas, USA, show that in this watershed human activities appear to dominate basin lithology in controlling the origin and metabolism of DIC. The middle Brazos flows through limestone and coal-bearing bedrock, but DIC isotope data suggest no limestone dissolution or respiration of ancient OM, and instead reflect efficient air?Cwater CO₂ exchange, degradation of relatively young OM and photosynthesis in the river as a result of river damming and urban treated wastewater input. The lower Brazos drains only small areas of carbonate and coal-bearing bedrock, but DIC isotope data suggest the strong influence of carbonate dissolution, with a potentially minor contribution from decomposition of old soil organic matter (SOM). Oyster shells and crushed carbonate minerals used in road construction are likely sources of carbonate in the lower Brazos, in addition to natural marl and pedogenic carbonate. Additionally, the generally low pCO₂ and high DIC concentration in the Brazos River lead to a low CO₂ outgassing:DIC export ratio, distinguishing the Brazos River from other rivers.     

Interaction of the haloalkaliphilic purple bacteria <Emphasis Type="Italic">Rhodovulum steppense</Emphasis> with aluminosilicate minerals

The interaction was investigated between the haloalkaliphilic nonsulfur purple bacteria Rhodovulum steppense A-20s^T and layered aluminosilicates: micas (biotite, phlogopite, and muscovite) and clay minerals (montmorillonite and kaolinite). The interaction between all components of this system (minerals, water, medium, and bacteria) resulted in the changes in the chemical composition of the minerals and solutions. These changes were especially significant in the presence of bacteria. By using some elements for growth and promoting their transfer into the exchange pool of the minerals, bacteria removed these elements from the medium. The content of exchange bases in the aluminosilicates incubated in the presence of bacteria was several times higher than in the minerals incubated in sterile medium. The observed saturation of the mineral phase with potassium and magnesium may be considered the initial phase of diagenesis of the aluminosilicates under study.     

Extraction of copper from an oxidized (lateritic) ore using bacterially catalysed reductive dissolution

An oxidized lateritic ore which contained 0.8 % (by weight) copper was bioleached in pH- and temperature-controlled stirred reactors under acidic reducing conditions using pure and mixed cultures of the acidophilic chemolithotrophic bacterium Acidithiobacillus ferrooxidans. Sulfur was provided as the electron donor for the bacteria, and ferric iron present in goethite (the major ferric iron mineral present in the ore) acted as electron acceptor. Significantly more copper was leached by bacterially catalysed reductive dissolution of the laterite than in aerobic cultures or in sterile anoxic reactors, with up to 78 % of the copper present in the ore being extracted. This included copper that was leached from acid-labile minerals (chiefly copper silicates) and that which was associated with ferric iron minerals in the lateritic ore. In the anaerobic bioreactors, soluble iron in the leach liquors was present as iron (II) and copper as copper (I), but both metals were rapidly oxidized (to iron (III) and copper (II)) when the reactors were aerated. The number of bacteria added to the reactors had a critical role in dictating the rate and yield of copper solubilised from the ore. This work has provided further evidence that reductive bioprocessing, a recently described approach for extracting base metals from oxidized deposits, has the potential to greatly extend the range of metal ores that can be biomined.     

Oligomerization of Glycine and Alanine Catalyzed by Iron Oxides: Implications for Prebiotic Chemistry

Iron oxide minerals are probable constituents of the sediments present in geothermal regions of the primitive earth. They might have adsorbed different organic monomers (amino acids, nucleotides etc.) and catalyzed polymerization processes leading to the formation of the first living cell. In the present work we tested the catalytic activity of three forms of iron oxides (Goethite, Akaganeite and Hematite) in the intermolecular condensation of each of the amino acids glycine and L-alanine. The effect of zinc oxide and titanium dioxide on the oligomerization has also been studied. Oligomerization studies were performed for 35 days at three different temperatures 50, 90 and 120°C without applying drying/wetting cycling. The products formed were characterized by HPLC and ESI-MS techniques. All three forms of iron oxides catalyzed peptide bond formation (23.2% of gly2 and 10.65% of ala2). The reaction was monitored every 7 days. Formation of peptides was observed to start after 7 days at 50°C. Maximum yield of peptides was found after 35 days at 90°C. Reaction at 120°C favors formation of diketopiperazine derivatives. It is also important to note that after 35 days of reaction, goethite produced dimer and trimer with the highest yield among the oxides tested. We suggest that the activity of goethite could probably be due to its high surface area and surface acidity.