Coordination of Ribosomal Protein and Ribosomal RNA Gene Expression in Response to TOR Signaling

Cells grow in response to nutrients or growth factors, whose presence is detected and communicated by elaborate signaling pathways. Protein kinases play crucial roles in processes such as cell cycle progression and gene expression, and misregulation of such pathways has been correlated with various diseased states. Signals intended to promote cell growth converge on ribosome biogenesis, as the ability to produce cellular proteins is intimately tied to cell growth. Part of the response to growth signals is therefore the coordinate expression of genes encoding ribosomal RNA (rRNA) and ribosomal proteins (RP). A key player in regulating cell growth is the Target of Rapamycin (TOR) kinase, one of the gatekeepers that prevent cell cycle progression from G1 to S under conditions of nutritional stress. TOR is structurally and functionally conserved in all eukaryotes. Under favorable growth conditions, TOR is active and cells maintain a robust rate of ribosome biogenesis, translation initiation and nutrient import. Under stress conditions, TOR signaling is suppressed, leading to cell cycle arrest, while the failure of TOR to respond appropriately to environmental or nutritional signals leads to uncontrolled cell growth. Emerging evidence from Saccharomyces cerevisiae indicates that High Mobility Group (HMGB) proteins, non-sequence-specific chromosomal proteins, participate in mediating responses to growth signals. As HMGB proteins are distinguished by their ability to alter DNA topology, they frequently function in the assembly of higher-order nucleoprotein complexes. We review here recent evidence, which suggests that HMGB proteins may function to coordinate TOR-dependent regulation of rRNA and RP gene expression.Key Words: Rapamycin, TORC1, HMO1, high mobility group, yeast, RP gene, rDNA.     

Protein Arp and protein H from group A streptococci. Ig binding and dimerization are regulated by temperature.

Cell surface proteins that bind to the Fc part of Ig are expressed by many strains of group A streptococci, an important human pathogen. Two such bacterial strains, AP4 and AP1, were shown to bind IgA and IgG, respectively, in a temperature-dependent manner. The binding of radiolabeled Ig to the bacterial cells was lower at 37 degrees C than at 22 and 4 degrees C. Similarly, protein Arp, the IgA-binding protein isolated from strain AP4, and protein H, the IgG-binding protein isolated from strain AP1, displayed a strong Ig-binding at 22 degrees C and lower temperatures, and virtually no binding at all at 37 degrees C. The effect was reversible: lowering of the temperature restored the binding and vice versa. A gradual shift between binding and nonbinding took place between 27 and 37 degrees C. Gel chromatography and velocity sedimentation centrifugation showed that protein Arp and protein H appeared as noncovalently associated dimers at 10 and 22 degrees C, and as monomers at 37 degrees C. These results strongly suggest that the dimerization of protein Arp and protein H, rather than the low temperature itself, yielded the strong Ig-binding of the proteins at 10 and 22 degrees C. Indeed, after covalent cross-linking of the dimers at 10 degrees C by incubation with low concentrations of glutaraldehyde, full Ig-binding was achieved even at 37 degrees C. A carboxyl-terminal proteolytic fragment of protein Arp, which completely lacked the IgA-binding capacity at any temperature, showed the same temperature-dependent dimerization as intact protein Arp, suggesting that the Ig-binding part of the protein is not required for dimerization. The implications of these results for the function of Ig-binding group A streptococcal proteins, and their role in the host-parasite relationship are discussed.     

前列腺癌患者组织中RPL6的表达及临床意义

目的:探讨前列腺癌患者组织中核糖体蛋白L6(RPL6)表达,分析其对肿瘤恶性程度的评估作用。方法:收集2013年12月-2015年12月在本院接受治疗的前列腺疾病患者117例,根据病理结果分为前列腺炎组63例、前列腺癌组54例;另取同期进行健康体检的健康者80例作为正常对照组。采用Western-blot法检测三组研究对象的前列腺组织RPL6表达,采用酶联免疫吸附法(ELISA)测定血清肿瘤标志物含量,采用RT-PCR法检测前列腺组织增殖基因、侵袭基因mRNA表达,采用Pearson检验分析RPL6表达量与肿瘤恶性程度的相关关系。结果:前列腺癌组患者的前列腺组织RPL6表达量高于前列腺炎组及正常对照组(P0.05);前列腺癌组患者的血清前列腺特异性抗原(PSA)、前列腺特异性酸性磷酶(PSAP)、尿激酶型纤溶酶原激活剂(u PA)、硫氧还蛋白(TRX)含量高于前列腺炎组及正常对照组(P0.05);前列腺癌组患者的前列腺组织增殖基因URG11、PTEN mRNA表达量高于前列腺炎组及正常对照组,PRDM5 mRNA表达量低于前列腺炎组及正常对照组,侵袭基因IgGHG1、TMPRSS2-ER、PIK3C2B mRNA表达量高于前列腺炎组及正常对照组(P0.05)。前列腺癌患者的组织RPL6表达量与肿瘤标志物含量、增殖及侵袭基因活性均呈直接相关关系(P0.05)。结论:高表达的RPL6是前列腺癌早期诊断的可靠指标,且与肿瘤恶性程度直接相关,有望成为前列腺癌辅助诊断及预后评估的重要手段。     

线虫核糖核蛋白基因内含子与相应编码序列的相互作用

对线虫核糖核蛋白基因内含子序列与相应编码序列采用Smith-Waterman方法做局域比对分析,探讨两者之间的相互作用机制．发现内含子中部序列确实存在与相应编码序列的相互作用区域．第一内含子的最佳匹配分布在内含子15%～55%的区域内,第二内含子的最佳匹配分布在内含子30%～80%的区域内．对于长内含子,在与外显子序列比对时,最佳匹配分布在内含子5%～20% 区域内,在与整个编码序列比对时,出现了两个峰区,一个位于内含子15%～30%区域内,另一个位于内含子54%～78%区域内．推测第一个峰区与外显子内部序列有关,第二个峰区与外显子-外显子结合区域的序列有关．还发现编码序列上存在多个与内含子序列的相互作用域和一些禁配区域分布．推测这些禁配区域与蛋白质结合区域有关．结论印证了内含子序列与相应编码序列协同进化的观点．     

吸水和干燥条件下发菜核糖体代谢差异表达基因分析

为解析发菜吸水和干燥条件下的基因差异表达规律以及发菜适应"干-湿"水分节律调控机制,该研究以充分吸水发菜藻体为对照组,干燥状态下的发菜藻体为处理组,采用高通量Illumina HiSeq PE150测序平台结合生物信息学分析方法对发菜吸水和干燥条件下的差异表达基因进行分析。结果显示:(1)发菜吸水和干燥条件下共鉴定到差异表达基因3 383个,其中显著上调和显著下调表达的基因数分别为1 767个和1 616个。(2)GO功能富集分析发现,在吸水和干燥条件下发菜差异表达基因主要富集在蛋白质合成与代谢等相关途径中;KEGG显著性富集分析发现,吸水和干燥条件下发菜有46个差异表达基因被显著富集到核糖体代谢途径,且均为显著上调表达,这些基因可能参与发菜对干旱胁迫的响应。(3)随机挑选6个被显著富集到核糖体代谢途径的基因进行qRT-PCR分析发现,其基因相对表达量与转录组测序结果一致。研究表明,发菜在干燥条件下可能通过激活核糖体代谢特定基因表达帮助抗旱相关的蛋白质的合成和正确折叠、并参与渗透调节等重要生理活动进而调控其适应干燥环境条件。     

单纯疱疹病毒2gD-Hsp70融合蛋白基因的构建及表达

构建并原核表达Hsp70-HSV2gD融合蛋白。将Hsp70和HSV-2gD蛋白基因分别克隆到原核表达载体pGEX-4T-1,构建成重组质粒pGEX-4T-Hsp70-gD,并测序鉴定。重组质粒pGEX-4T-Hsp70-gD转化大肠杆菌DH5α后,IPTG诱导表达并进行SDS-PAGE分析。表达产物纯化后做Westernblot检测。将其肌注免疫BALB/c小鼠,检测融合蛋白对免疫小鼠脾淋巴细胞增殖、γ-干扰素产生以及血清中gDIgG水平的影响。表达产物的SDS-PAGE分析发现,在相对分子量为118kD处有外源蛋白表达,与预期蛋白带一致。用GST柱得到了纯化的Hsp70-HSV2gD融合蛋白。Westernblot证实,表达产物具有良好的活性。GST-Hsp70-gD组蛋白疫苗免疫的小鼠,其脾淋巴细胞刺激指数和脾淋巴细胞培养上清中γ-干扰素的水平高于其它组(P<0.05)。血清单纯疱疹病毒-2gD蛋白的抗体水平高于其它组(P<0.05)。     

H9N2型禽流感病毒核蛋白的原核表达及多克隆抗体制备

目的:利用大肠杆菌表达H9N2禽流感病毒(AIV)核蛋白(NP)与GST的融合蛋白并分离纯化,进行动物免疫制备多克隆抗体。方法:根据AIV NP基因序列设计引物,将已经获得的NP基因定向克隆到GST融合原核表达载体pGEX-KG并转化大肠杆菌,在IPTG诱导下获得高效表达。经谷胱甘肽层析柱分离纯化蛋白,制备抗原免疫家兔,得到pGEX-KG-NP多克隆抗体。结果:SDS-PAGE分析显示融合表达蛋白GST-NP相对分子质量约82 000,表达量约占菌体总蛋白的20%。Western-blot和ELISA检测结果表明,重组NP能与鸡抗AIV抗体发生明显的抗原抗体反应。自制的多克隆抗体能特异地与NP相互作用,可用于AIV病原诊断。结论:获得了NP基因的高效表达产物;制备了效价和特异性良好的抗重组NP多克隆抗体。经实验验证表达产物具有活性,多克隆抗体效价高,特异性强,为AIV病原诊断试剂的研发奠定了基础。