Spatio-temporal nested patterns in macroinvertebrate assemblages across a pond network with a wide hydroperiod range

Nestedness has been widely used to measure the structure of biological communities and occurs when species-poor sites contain subsets of species-rich ones. Here, we examine nested patterns across the macroinvertebrate assemblages of 91 ponds in Doñana National Park, Spain, and explore temporal variation of nestedness and species richness in 19 temporary ponds over 2 years with differing rainfall. Macroinvertebrate assemblages were significantly nested; both pond spatial arrangement and environmental variation being important in driving nested patterns. Despite the nested structure observed, a number of taxa and ponds deviate from this pattern (termed idiosyncratic), by occurring more frequently than expected in species-poor sites, or having assemblages dominated by species largely absent from species-rich sites. Aquatic adults of winged insects, capable of dispersal, were more highly nested than non-dispersing taxa and life-history stages. Idiosyncratic taxa were found in ponds spanning a wide range of hydroperiods, although nestedness was higher in more permanent waterbodies. Monthly sampling demonstrated a gradual increase of species richness and nestedness from pond filling to April–May, when the most temporary ponds started to dry. Although the degree of nestedness of individual pond assemblages varied from month to month, the overall degree of nestedness in the two study years was practically identical despite marked differences in hydroperiod. Our results suggest that differential colonization and environmental variation are key processes driving the nested structure of Doñana ponds, that macroinvertebrate assemblages change in a predictable manner each year in response to cycles of pond wetting and drying, and that connectivity and environmental variability maintain biodiversity in pond networks.     

Fine-scale structure and cross-taxon congruence of bird and beetle assemblages in an old-growth boreal forest mosaic

Aim Nestedness occurs when species present in depauperate sites are subsets of those found in species‐rich sites. The degree of congruence of site nestedness among different assemblages can inform commonalities of mechanisms structuring the assemblages. Well‐nested assemblages may still contain idiosyncratic species and sites that notably depart from the typical assemblage pattern. Idiosyncrasy can arise from multiple processes, including interspecific interactions and habitat preferences, which entail different consequences for species co‐occurrences. We investigate the influence of fine‐scale habitat variation on nestedness and idiosyncrasy patterns of beetle and bird assemblages. We examine community‐level and pairwise species co‐occurrence patterns, and highlight the potential influence of interspecific interactions for assemblage structure. Location Côte‐Nord region of Québec, Canada. Methods We sampled occurrences of ground‐dwelling beetles, flying beetles and birds at sites within old‐growth boreal forest. We examined the nestedness and idiosyncrasy of sites and sought relationships to habitat attributes. We analysed non‐random species co‐occurrence patterns at pairwise and community levels, using null model analysis and five ‘association’ indices. Results All three assemblages were significantly nested. There was limited congruence only between birds and flying beetles whose nestedness was related to canopy openness. For ground‐dwelling beetles, nestedness was related to high stand heterogeneity and sapling density, whereas site idiosyncrasy was inversely related to structural heterogeneity. For birds, site idiosyncrasy increased with canopy cover, and most idiosyncratic species were closed‐canopy specialists. In all assemblages, species idiosyncrasy was positively correlated with the frequency of negative pairwise associations. Species co‐occurrence patterns were non‐random, and for flying beetles and birds positive species pairwise associations dominated. Community‐level co‐occurrence summaries may not, however, always reflect these patterns. Main conclusions Nestedness patterns of different assemblages may not correlate, even when sampled at common locations, because of different responses to local habitat attributes. We found idiosyncrasy patterns indicating opposing habitat preferences, consistent with antagonistic interactions among species within assemblages. Analysis of such patterns can thus suggest the mechanisms generating assemblage structures, with implications for biodiversity conservation.     

The relationship between wetland hydroperiod and nestedness patterns in assemblages of larval amphibians and predatory macroinvertebrates

Assemblages exhibit nested distributional patterns if the species found in species-poor locations also occur in progressively richer locations. We investigated patterns of nestedness in assemblages of larval amphibians and predatory macroinvertebrates in 42 isolated freshwater wetlands in southern New Hampshire, USA. These wetlands varied markedly in hydroperiod and we predicted that nestedness would be relatively weak because changes in disturbance processes (the relative threat of desiccation and predation) along the hydroperiod gradient often generate distinct assemblages. Contrary to expectations we found that both amphibian and macroinvertebrate assemblages were strongly nested not only with respect to species richness but also with respect to hydroperiod and wetland size, which were positively correlated. We attribute our results to the increased colonization rates and decreased extinction rates associated with increasing hydroperiod, and to concomitant increases in wetland size, habitat heterogeneity/complexity, and possibly water temperature. Moreover, the impact of predatory fishes on species richness and composition of amphibians and macroinvertebrates was relatively minor. We found that amphibians had a significantly lower degree of nestedness than macroinvertebrates, suggesting that a higher proportion of amphibian species found in species-poor assemblages was unlikely to occur in species-rich assemblages of amphibians (e.g. wood frogs and spotted salamanders). The degree of nestedness appeared to be influenced primarily by hydroperiod and wetland size for amphibians, whereas nestedness of macroinvertebrates was influenced by unknown factors (possibly water temperature) in addition to hydroperiod and wetland size. The high degrees of nestedness observed in amphibian and macroinvertebrate assemblages imply that protection of larger, more permanent wetlands may be more important for conserving native biological diversity than protection of smaller, non-permanent wetlands. However, non-permanent wetlands are used by several species of conservation concern that often do not occur in larger and more permanent wetlands.     

Determinants of the diversity of plants, birds and mammals of coastal islands of the Humboldt current systems: implications for conservation

Sound conservation plans for islands require understanding the processes underlying to the patterns of species richness and composition. Larger islands are often the targets of conservation assuming that the island area mainly determines species richness, and that species composition is nested across islands. However, in small-island these patterns could be altered because of stochastic processes, and species assemblages could be disharmonious. In addition, human impact could further modify the distribution pattern and diversity. Here we use the case of seven islands from the coastal system of Coquimbo as a model to address the role of environmental variables and human impacts on species richness and assembly rules of plants, birds, and mammals. We hypothesize (a) the existence of a small-island effect, and the prevalence of habitat diversity and anthropogenic impacts as main drivers of species richness, and (b) the existence of disharmonious assemblages, characterized by a low degree of nestedness and random patterns of species co-occurrence. Our results showed that (a) species richness is mainly correlated with habitat diversity, and only weakly related to island area supporting the ‘small-island effect’ and (b) species composition is highly structured, but that such structure may be the result of anthropogenic activities. Nestedness was observed in plants and landbirds, while co-occurrence patterns were only detected in plants. Assemblages in small-islands departed from the nestedness pattern and maintain rare species. Currently, only three of the seven islands are protected by national regulations, excluding the smaller ones that are subjected to human disturbance and invasive mammals. Our study suggests that it necessary to include all the islands in a major protected area to preserve both richness and species composition of a number of representative islands of the Humboldt current systems. We showed that conservation plans solely based on island area might not be robust.     

Relating fish kills to upwellings and wind patterns in the Salton Sea

Awareness of pond conservation value is growing all over Europe. Ponds are recognized as important ecosystems supporting large numbers of species and several rare and threatened aquatic plants, macroinvertebrates and amphibians. Notwithstanding ponds, particularly temporary ones, are still neglected in Italy. There are some gaps in our understanding of the macrophyte ecology and the conservation value of Mediterranean small still waters. Therefore, this study investigated the macrophyte communities and physico-chemical characteristics of 8 permanent and 13 temporary ponds along the Tyrrhenian coast near Rome, with the aim to relate the distribution of aquatic plants to environmental variables, and to define the botanical conservation value of ponds. Throughout the study period (Spring 2002), Principal Component Analysis performed on abiotic variables clearly discriminated temporary ponds, smaller and more eutrophic, from permanent ponds, larger and with higher pH and oxygen concentration. A total of 73 macrophyte taxa were collected in the study ponds. Temporary waters hosted a smaller number of plant species than permanent ones. Besides hydroperiod length, the environmental factors related to plant richness were maximum depth, surface area, dissolved oxygen and nitrogen concentration in the water. Moreover, the Non-metric Multidimensional Scaling showed a high dissimilarity in the taxonomic composition of aquatic plants between temporary and permanent ponds. The former contained more annual fast-growing species (Callitriche sp. pl. and Ranunculus sp. pl.), while in the latter species with long life-cycles (i.e. Potamogeton sp. pl.) were more abundant. Our results highlighted that temporary and permanent ponds in central Italy have different macrophyte assemblages, with aquatic species (including some of conservation interest at regional scale) exclusively found in each pond type. This suggested that both type of ponds could give an irreplaceable contribution to the conservation of aquatic plant diversity of these freshwater ecosystems. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users. Guest editors: R. Céréghino, J. Biggs, B. Oertli & S. Declerck The ecology of European ponds: defining the characteristics of a neglected freshwater habitat     

Determinant landscape‐scale factors on pond odonate assemblages

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The response of amphibian communities to fish and habitat features in Mediterranean permanent ponds

Generalized linear models were used to test the effect of fish, using ponds with and without fish and habitat features as covariates, on richness and abundance of amphibian species. Five fish species and six amphibian species were recorded in 60 permanent ponds located in central Italy. The choice of covariates (macrophyte cover and pond surface area) was made after studying the correlations. The richness of amphibian species was not significantly affected by fish presence or macrophyte cover, in line with previous studies, since almost all the fish species were non-predatory. However, abundance of urodeles (newts) was negatively affected by fish and positively affected by macrophyte cover. Although fish may strongly influence the abundance and composition of amphibian communities, the results indicate that the cover of aquatic macrophytes may increase the available habitat for amphibians and therefore their abundance. Anuran species preferred ponds where fish were present, since both groups preferred larger ponds. Concordance between fish and amphibian species composition was not found by the Mantel and Partial Mantel tests. This indicates that the fish assemblages do not predict which amphibian species occur in the pond.     

Simple pond restoration measures increase dragonfly (Insecta: Odonata) diversity

Ponds are home to a diverse community of specialized plants and animals and are hence of great conservation concern. Through land-use changes, ponds have been disappearing rapidly and remaining ponds are often threatened by contamination and eutrophication, with negative consequences for pond-dependent taxa like amphibians or dragonflies (Odonata: Anisoptera and Zygoptera). Increasingly, restoration measures such as removal of shading terrestrial vegetation or submerged organic matter are implemented to counteract current threats, but how these measures affect the target taxa is rarely assessed. We tested if and how simple pond restoration measures affectionate diversity. We propose that pond restoration influences the light regime, which promotes aquatic and riparian vegetation important for different dragonfly life stages, thus increasing their diversity. Additionally, we assume that this changes dragonfly species composition between restored and unrestored ponds. We surveyed exuviae in the riparian and aquatic vegetation along the shore of 29 (12 restored, 17 unrestored) man-made ponds in southwest Germany and assessed environmental variables known to affect dragonfly diversity. We identified the cover of tall sedges and submerged macrophytes as the driving biotic variables for dragonfly diversity and species composition, with restoration measures affecting submerged macrophyte cover directly but tall sedges indirectly via available sunlight. This study demonstrates that simple restoration measures not only have a positive effect on overall dragonfly diversity, but also increase habitat suitability for several species that would otherwise be absent. We therefore propose dragonflies as a suitable flagship group for pond conservation.     

Nested subset patterns of species composition in a pond-dwelling fish fauna

Our objectives are to examine the influence of the difference in stress tolerance among species on patterns of nestedness and to test whether a set of several small ponds supports more species than a few large ponds of equal area. Although fish species assemblages for each group of all fish, tolerant and intolerant species were significantly nested, intolerant species showed stronger nested tendency than tolerant species, suggesting that the tolerance of species can influence the patterns of nestedness. These results suggest that the tolerance of species can influence the patterns of nestedness. As for the comparison of cumulative species richness in small ponds and large ponds, although small ponds supported more species for tolerant species, there was little difference for intolerant species.     

Promoting dragonfly diversity in cities: major determinants and implications for urban pond design

Urbanisation is increasing and it is essential to integrate biodiversity into the spatial planning of urban areas. This requires deeper understanding of biodiversity patterns in cities. We investigated which habitat variables are major determinants of dragonfly diversity and species assemblage structure in the municipal area of Dortmund (Germany). We sampled dragonfly larvae in 33 ponds situated in city parks, commercial, residential and agricultural areas. We recorded 30 autochthonous dragonfly species with species richness ranging from zero to 17. Additionally, we surveyed a set of environmental variables including habitat size, water level, pond structures and vegetation as well as surrounding landscape and potential disturbances like waterfowl and fish. Multivariate methods were used to identify the major determinants of dragonfly diversity, abundance and assemblage structure. Analysis indicated that diversity of aquatic and terrestrial vegetation affected dragonfly diversity positively. City park ponds had low diversity, but Ischnura elegans was obviously promoted by the specific park pond conditions, including high waterfowl density. We found five assemblages mostly determined by generalistic species which were related to different pond types. Moderately disturbed ruderal and pioneer ponds in residential and agricultural areas also contained increased numbers of rare species. Our results indicate that urban ponds may have a great value for maintaining biodiversity, but various disturbances have negative impact. To promote urban biodiversity we suggest a natural design of well-vegetated ponds as well as a high diversity of different pond types and particularly a more-natural redesign of city park ponds.     

Spatial and temporal variability of aquatic habitat use by amphibians in a hydrologically modified landscape

1. Habitat loss is a major driver of biodiversity decline worldwide. Temporary waterbodies are especially vulnerable because they are sensitive both to human impact and to climatic variations. Pond‐breeding amphibians are often dependent on temporary waterbodies for their reproduction, and hence are sensitive to loss of temporary ponds. 2. Here we present the results of a 5‐year study regarding the use of temporary aquatic habitats by amphibians in a hydrologically modified area of Eastern Europe (Romania). The annual number of aquatic habitats varied between 30 and ～120. Each aquatic habitat was characterised by a number of variables such as: ‘type’ (pond, drainage ditch and archaeological ditch), ‘hydroperiod’ (number of weeks the ponds were filled in a given year), ‘depth’ (cm), ‘area’ (m²) and the density of predatory insects (‘predation’). The turnover rate for each amphibian species for each wetland was calculated based on the pond occupancy. 3. Eight amphibian species were recorded from the aquatic habitats. Hydroperiod was the most important variable, positively influencing wetland use by amphibians and their reproductive success. Most species preferred drainage ditches for reproduction, and the reproductive success was highest in this habitat type every year. For most of the species, the local extinction rate was higher than the colonisation rate in the first 4 years, but the situation reversed in the last year of the study when wetland use by amphibians sharply increased because of high rainfall. 4. This study confirms the importance for amphibians of maintaining and managing aquatic habitat diversity at small spatial scales. Man‐made aquatic habitats such as drainage ditches may be important habitats for amphibians, and this should be considered in restoration activities.     

Lizard assemblages in a fragmented landscape of central Chile

We studied lizard assemblages assessing abundance, richness, and nestedness in a fragmented landscape of central Chile including native temperate forest, forest fragments, and commercial pine plantations. Fragmentation and plantations increase the availability of edge habitats triggering both the support of additional lizard species, absent at the continuous forest, and the nestedness of lizard assemblages, where interior habitats of forest and plantations are nested subsets of habitat edges. A vulnerable lizard (Liolaemus tenuis) thrives at fragments in abundance similar to the continuous forest. Therefore, remnants ought to be considered in the conservation of lizard assemblages.     

Nested bird and micro-habitat assemblages in a peatland archipelago

Biotic assemblages of insular habitats are nested when poor assemblages are subsets of richer ones. Nestedness of species assemblages is frequent and may result from selective extinction or frequent colonization in insular habitats. It may also be created by a nested distribution of habitats among islands or by sampling bias. We sampled 67 isolated peatlands (7–843 ha) in southern Quebec, Canada, to measure nestedness of bird species assemblages among peatlands and assess the habitat nestedness hypothesis. Species and microhabitat assemblages were both strongly nested among peatlands. Whether sites were ranked by species richness, microhabitat richness or peatland area had no effect on nestedness. However, microhabitat nestedness was significantly reduced when sites were sorted by area rather than by microhabitat richness. As expected, if bird-microhabitat associations are responsible for the nested pattern of distribution, we found a positive correlation between the contributions of bird species and microhabitats to individual site nestedness. Nevertheless, microhabitat assemblages were significantly less nested than bird species assemblages, possibly because of frequent recolonization by birds or uneven sampling among sites. Received: 12 June 1998 / Accepted: 20 September 1998     

Nestedness of butterfly assemblages in the Zhoushan Archipelago,China: area effects,life-history traits and conservation implications

The nested subset pattern (nestedness) of faunal assemblages has been a research focus in the fields of island biogeography and conservation biology in recent decades. However, relatively few studies have described nestedness in butterfly assemblages in oceanic archipelago systems. Moreover, previous studies often quantified nestedness using inappropriate nestedness metrics and random fill algorithms with high Type I errors. The aims of this study are to examine the existence of nestedness and underlying causal mechanisms of butterfly assemblages in the Zhoushan Archipelago, China. We used the line-transect method to determine butterfly occupancy and abundance on 42 study islands from July to August 2014. We obtained butterfly life-history traits (wingspan, body weight and minimum area requirement) by field work and island geographical features (area and isolation) from the literature. We used the recently developed metric WNODF to estimate nestedness. Partial Spearman rank correlation was used to evaluate the associations of nestedness and island geographical features as well as butterfly life-history traits related to species extinction risk and colonization ability. The butterfly assemblages were significantly nested. Island area and minimum area requirement of butterflies were significantly correlated with nestedness after controlling for other independent variables. In contrast, the nestedness of butterflies did not appear to result from passive sampling or selective colonization. However, multi-year studies are needed to confirm that target effects are not muddling these results. Our results indicate that selective extinction may be the main driver of nestedness of butterfly assemblages in our study system. From a conservation viewpoint, we should protect both large islands and species with large area requirement to maximize the number of species preserved.     

BIODIVERSITY RESEARCH: Nestedness for different reasons: the distributions of birds,lizards and small mammals on islands of an inundated lake

Aim We examined whether the community compositions of birds, lizards and small mammals were nested in a fragmented landscape in the Thousand Island Lake, China. We also assessed whether the mechanisms influencing nestedness differed among these taxonomic groups. Location Thousand Island Lake, China. Methods Presence/absence matrices were compiled for birds (42 islands) and lizards (42 islands) using line‐transect methods, and for small mammals (14 islands) using live‐trapping methods from 2006 to 2009. Nestedness was analysed using BINMATNEST, and statistical significance was assessed using the conservative null model 3. We used Spearman rank correlations and partial Spearman rank correlations to examine associations of nestedness and habitat variables (area, isolation, habitat diversity and plant richness) as well as life‐history traits (body size, habitat specificity, geographical range size and area requirement) related to species extinction and immigration tendencies. Results The community compositions of birds, lizards and small mammals were all significantly nested, but the causal factors underlying nestedness differed among taxonomic groups. For birds, island area, habitat specificity and area requirement were significantly correlated with nestedness after controlling for other independent variables. For lizards, habitat heterogeneity was the single best correlate of nestedness. For small mammals, island area, habitat heterogeneity and habitat specificity were significantly correlated with nestedness. The nested patterns of birds, lizards and small mammals were not attributable to passive sampling or selective colonization. Main conclusions The processes influencing nested patterns differed among taxonomic groups. Nestedness of bird assemblages was driven by selective extinction, and lizard assemblage was caused by habitat nestedness, while nestedness of small mammals resulted from both selective extinction and habitat nestedness. Therefore, we should take taxonomic differences into account when analysing nestedness to develop conservation guidelines and refrain from using single taxa as surrogates for others.     

Breeding site characteristics regulating life history traits of the brown tree frog, Litoria ewingii

Past research has determined the habitat requirements of amphibian species predominantly from presence/absence studies. This study tested the hypothesis that relationships between breeding site habitat components, life history traits and fitness may provide a higher resolution of biological data relating to the habitat requirements of amphibian species. We tested this novel approach by using Litoria ewingii as our model species. We correlated larval and metamorph life history traits with habitat variables at 28 small to medium sized ponds within a commercially logged forest in southern Tasmania, Australia. To avoid larval mortality due to pond desiccation, L. ewingii laid eggs and metamorphosed earlier in smaller ponds. Snout vent length at metamorphosis increased with elevation and metamorphosis was earlier in less shaded ponds. Breeding ponds that maximised the fitness of L. ewingii were higher elevation ponds with reduced shading, steeper bank slopes and reduced pond isolation. The findings of the study equip land managers with a greater ecological understanding of ecosystem function in relation to specific species. The methodological approach has broad application to conservation biology where an awareness of the specific habitat requirements of amphibians is critical to successful ecosystem management.     

Patterns in the organization of Cerrado pond biodiversity in Brazilian pasture landscapes

There is a worldwide concern on the loss of pond biodiversity in human dominated landscapes. Nevertheless, agricultural activities appear to increase pond number in the Brazilian Cerrado through damming streams for cattle raising. These man-made ponds may represent important landscape features, but their importance to regional biodiversity has not yet been studied. Here, we evaluated differences in alpha and beta diversity under a multi-taxonomic approach, as well as tested pond size as the main driver of local species richness. We also assessed the importance of environmental heterogeneity through the analysis of the regional species accumulation curves (SAC). The overall result suggests that species turnover was the major component of regional biodiversity for all groups. Major physical and chemical water conditions had no effects on algae, macrophytes, water bugs, and birds species richness. Pond size had a significant effect on Odonata and fish species richness, while water beetles and amphibians were influenced by trophic conditions. Results from regional SAC show variations among different taxonomic groups regarding landscape heterogeneity: only algae, fish, and birds do not reached to an asymptote and had higher z-values. Our results highlight the importance of ponds for biodiversity conservation in increasingly agricultural landscapes in central Brazil.     

Landscape context influences the abundance of amphibians and the strength of their food web interactions in small ponds

Many species, including most amphibians, undergo an ontogenetic niche shift (ONS) from an aquatic larval stage to a terrestrial adult stage. We use the ratio of aquatic to terrestrial habitat in a landscape as a tool to understand the influence of landscape context on the population growth of ONS species. The aquatic to terrestrial ratio (ATR) of habitats can be viewed as an analog to the influence of resource ratios on the population growth of consumers and depends on the degree to which each habitat type limits the growth of a given population. Population growth rates of shorter‐lived species tend to be more limited by demographic rates in early (aquatic) life stages. As a result, increasing the ATR should lead to a higher total population size in the landscape (and higher densities in the terrestrial habitat), but have little influence on the density of individuals in any given aquatic habitat. Alternatively, population growth rates of longer‐lived species tend to be more limited by demographic rates in later (terrestrial) life stages and increasing the ATR should have little influence on the total population size in the landscape, but decrease the density of individuals in any given aquatic habitat. We show that among‐landscape variation in the breeding‐pond densities of three widespread amphibians with contrasting life histories is consistent with this framework. Within‐pond densities of Pseudacris crucifer, a species with short‐lived adults, were not influenced by ATR, whereas within‐pond densities of Hyla versicolor, a longer‐lived member of the same family (Hylidae), declined as ATR increased. Ambystoma maculatum, a long‐lived salamander, also had lower densities in ponds with higher ATR. Because A. maculatum larvae are important predators in ponds, we use structural equation modeling to show that landscape context (ATR) can moderate community structure via direct (amphibian abundances) and indirect (prey species richness) effects.     

Fish reduce habitat coupling by a waterbird: evidence from combined stable isotope and conventional dietary approaches

Aquatic consumers can function as habitat couplers by using allochthonous subsidies of prey that migrate across ecosystem boundaries. We examined the relative use of allochthonous (invertebrates—terrestrial or living on littoral vegetation; immigrating amphibians) versus autochthonous (aquatic invertebrates, fish) resources by the red-necked grebe Podiceps grisegena, a generalist predator, on fishless ponds versus ponds stocked with common carp Cyprinus carpio. We combined conventional methods of diet estimation with stable carbon and nitrogen analyses of egg yolks and putative prey of grebes. Prelaying grebes were observed to take mainly adult amphibians on fishless ponds and fish on stocked ponds. Alimentary tract analyses gave more weight to invertebrate prey, especially leaf beetles Donaciinae, apparently picked off water or emergent plants. Bayesian isotopic mixing models did not reveal predominance of a single food source but indicated that in the presence of fish grebes received relatively less energy for egg formation from amphibians and leaf beetles. Overall, our results show that grebes relied more on allochthonous resources (range of means 50–97 % of the biomass contribution estimated by different assessment methods) in the absence than in the presence of fish (8–23 %). We suggest that habitat coupling by waterbirds may be controlled by fish, which can suppress external prey subsidies, apart from being an attractive food for piscivorous birds.     

Fish assemblages in temporary ponds adjacent to 'terra-firme' streams in Central Amazonia

1. The effect of habitat structural features and physicochemical characteristics of the water on the composition and richness of fish assemblages in temporary ponds near streams were examined at three spatial scales: among ponds, among streams and between drainage basins, in a ‘terra‐firme’ (not subject to long‐term flooding) forest reserve in Central Amazonia. 2. The fish assemblage in temporary ponds was composed of subsets of 18 small‐bodied species widely distributed in the reserve. The assemblages had a nested subset structure, where smaller ponds contained subgroups of the species found in larger ponds. 3. Species composition and richness in temporary ponds were similar between drainage basins, although the fish assemblages in streams differed between basins. 4. Fish assemblage structure was influenced by local factors related to habitat structure, such as pond area and depth, canopy cover and hydroperiod. Physicochemical characteristics of the water in the ponds were similar between drainage basins and had little detectable effect on the structure of pond fish assemblages. 5. No correspondence was found between the composition, richness or abundance of fishes in the ponds and in stretches of the streams adjacent to the ponds. Therefore, it is not possible to predict the composition of these temporary pond fish assemblages from the fish assemblages found in adjacent streams.