Forecasting climate change impacts to plant community composition in the Sonoran Desert region

Hotter and drier conditions projected for the southwestern United States can have a large impact on the abundance and composition of long‐lived desert plant species. We used long‐term vegetation monitoring results from 39 large plots across four protected sites in the Sonoran Desert region to determine how plant species have responded to past climate variability. This cross‐site analysis identified the plant species and functional types susceptible to climate change, the magnitude of their responses, and potential climate thresholds. In the relatively mesic mesquite savanna communities, perennial grasses declined with a decrease in annual precipitation, cacti increased, and there was a reversal of the Prosopis velutina expansion experienced in the 20th century in response to increasing mean annual temperature (MAT). In the more xeric Arizona Upland communities, the dominant leguminous tree, Cercidium microphyllum, declined on hillslopes, and the shrub Fouquieria splendens decreased, especially on south‐ and west‐facing slopes in response to increasing MAT. In the most xeric shrublands, the codominant species Larrea tridentata and its hemiparasite Krameria grayi decreased with a decrease in cool season precipitation and increased aridity, respectively. This regional‐scale assessment of plant species response to recent climate variability is critical for forecasting future shifts in plant community composition, structure, and productivity.     

Multiscale climate change impacts on plant diversity in the Atacama Desert

Comprehending ecological dynamics requires not only knowledge of modern communities but also detailed reconstructions of ecosystem history. Ancient DNA (aDNA) metabarcoding allows biodiversity responses to major climatic change to be explored at different spatial and temporal scales. We extracted aDNA preserved in fossil rodent middens to reconstruct late Quaternary vegetation dynamics in the hyperarid Atacama Desert. By comparing our paleo‐informed millennial record with contemporary observations of interannual variations in diversity, we show local plant communities behave differentially at different timescales. In the interannual (years to decades) time frame, only annual herbaceous expand and contract their distributional ranges (emerging from persistent seed banks) in response to precipitation, whereas perennials distribution appears to be extraordinarily resilient. In contrast, at longer timescales (thousands of years) many perennial species were displaced up to 1,000 m downslope during pluvial events. Given ongoing and future natural and anthropogenically induced climate change, our results not only provide baselines for vegetation in the Atacama Desert, but also help to inform how these and other high mountain plant communities may respond to fluctuations of climate in the future.     

Linear and non-linear impacts of a non-native plant invasion on soil microbial community structure and function

Biological invasions can alter ecosystem functions such as litter decomposition and nutrient cycling, but little is known about how invader abundance influences the impact on the ecosystem. It is often assumed that impacts are proportional to invasion density, but this assumption has never been tested and has little justification. We tested the hypothesis that the microbial community structure and function of a mixed hardwood forest soil changed after invasion by Japanese barberry (Berberis thunbergii), an invasive shrub commonly found in eastern hardwood forests, and that changes were proportional to the density of invasion. We constructed microcosms with mixtures of native and invasive leaf litter, and measured microbial community structure (phospholipid fatty acids) and function (litter decomposition). Decomposition was linearly related to the degree of invasion (R ²?=?0.945), but the ratio of bacteria to fungi exhibited a strongly non-linear, threshold response (R ²?=?0.513). These results indicate that impacts of Japanese barberry invasion are not always proportional to invasion density. This finding has implications for the study of biological invasions as well as practical implications for the management of exotic invasive species.     

Selection on soil microbiomes reveals reproducible impacts on plant function

Soil microorganisms found in the root zone impact plant growth and development, but the potential to harness these benefits is hampered by the sheer abundance and diversity of the players influencing desirable plant traits. Here, we report a high level of reproducibility of soil microbiomes in altering plant flowering time and soil functions when partnered within and between plant hosts. We used a multi-generation experimental system using Arabidopsis thaliana Col to select for soil microbiomes inducing earlier or later flowering times of their hosts. We then inoculated the selected microbiomes from the tenth generation of plantings into the soils of three additional A. thaliana genotypes (Ler, Be, RLD) and a related crucifer (Brassica rapa). With the exception of Ler, all other plant hosts showed a shift in flowering time corresponding with the inoculation of early- or late-flowering microbiomes. Analysis of the soil microbial community using 16 S rRNA gene sequencing showed distinct microbiota profiles assembling by flowering time treatment. Plant hosts grown with the late-flowering-associated microbiomes showed consequent increases in inflorescence biomass for three A. thaliana genotypes and an increase in total biomass for B. rapa. The increase in biomass was correlated with two- to five-fold enhancement of microbial extracellular enzyme activities associated with nitrogen mineralization in soils. The reproducibility of the flowering phenotype across plant hosts suggests that microbiomes can be selected to modify plant traits and coordinate changes in soil resource pools.     

古尔班通古特沙漠区大沙鼠对荒漠植物群落的扰动效应

2006年5月,调查了大沙鼠洞区和对照区植物种类组成、盖度、密度、地上生物量,研究了大沙鼠对古尔班通古特沙漠植物群落物种组成和植被结构的影响.使用Mann-Whitney U检验表明,洞区植物种数(16.1)显著高于对照区(13.8)(Z=2.436,P<0.05);洞区半灌木种数(0.8)显著低于对照区(1.9)(Z=3.442,P<0.01).受大沙鼠扰动影响,大沙鼠洞区植被平均盖度(2.40%±2.30%)显著低于对照区(14.46%±6.82%)(Z=3.63,P<0.01);大沙鼠洞区地上植物生物量(6.52 g·m-2±6.30 g·m-2)显著低于对照区(23.3 g·m-2±12.85 g·m-2,Z=3.708,P<0.01).大沙鼠洞区Simpson指数(0.75±0.10,n=10)和Shannon-Wiener指数(0.78±0.12,n=10)显著高于对照区Simpson指数(0.61±0.16)和Shannon-Wiener指数(0.60±0.16)(t=2.362,P<0.05;t=2.948,P<0.01).结果表明:大沙鼠的掘洞、采食行为能够提高古尔班通古特沙漠1年生植物的物种多样性,并导致半灌木衰败.洞区的植物群落在一定程度上显现出次生演替的特征.     

The effects of deer exclusion on the development of a Mediterranean plant community affected by a wildfire

Despite the resilience of Mediterranean ecosystems to fire, the ecological restoration of burned plant communities can be hindered by ungulate herbivores, particularly in areas with high population densities. This study compares the postfire development of a shrub community with and without deer, after a wildfire occurred in 2003 in a protected area in Central Portugal. We monitored 12 fenced and 12 unfenced plots 2, 3, 4, and 8 years after fire. Within each plot, we established a linear transect and measured the monospecific canopy projections (plant patches). Five plant community indicators (patch number, average patch length, average patch height, patch cover, and patch phytovolume per square meter) were obtained. The diameter and height of individuals of the most abundant shrub species (Cistus salvifolius, Erica scoparia, Myrtus communis, Pistacia lentiscus, Rubus ulmifolius, and Ulex jussiaei) were also measured. These measurements were used as response variables in generalized linear mixed models in order to assess the effects of time‐after‐fire and fencing, on the development of the plant community. Patch height and phytovolume had a significantly higher growth in fenced plots. At the species level, C. salvifolius, M. communis, R. ulmifolius, and U. jussiaei showed a higher growth across time both in height and in diameter, in the absence of herbivory. This work shows that deer exclusion needs to be considered when aiming at the postfire restoration of Mediterranean shrub communities.     

古尔班通古特沙漠南部短命植物群落物种多样性及空间分异

短命植物是早春多雨、夏季干热环境而形成的特殊植物类型,古尔班通古特沙漠南部是短命植物集中分布区,对保持沙漠稳定、防风固沙起到重要作用.目前对短命植物群落多样性、生态功能以及空间分布等研究较少.本研究采用分层抽样方法,调查分析了古尔班通古特沙漠南部35个样点3.86×104m2的短命植物多样性特征.共发现93个物种,分属...     

Effects of a winter wildfire on plant community structure and forage quality in subalpine grassland of western Sichuan,China

火是继土壤、水分、温度之后, 塑造地表植被的主要力量。该文以2010年“12·5”冬草场火烧事件为背景, 通过对比川西亚高山草地火烧区域和未火烧区域火后第一年植被群落结构和牧草质量, 探讨亚高山草地植被对冬季火烧的响应机制。通过物种多样性分析、双向指示种分析(TWINSPAN)和干重等级法(dry-weight-rank)分析发现, 冬季火烧未改变植被的生物多样性、均匀度和物种丰富度, 却改变了植被群落结构的物种组成。冬季火烧导致一年生禾草、一年生杂草、灌木等3种生活型植物的数量和生物量增加; 多年生杂草数量减少, 生物量增加; 多年生禾草数量和生物量减少。冬季火烧也极大地减少了可食禾草的比例, 增加了各种杂草的生物量比例。此次火烧事件降低了细柄草(Capillipedium parviflorum)和早熟禾(Poa sp.)等可食禾草的竞争能力, 增加了一些杂草(如火绒草(Leontopodium leontopodioides)、白莲蒿(Artemisia sacrorum)、草玉梅(Anemone rivularis)等)在资源竞争中的相对优势, 最终表现为火后牧草的可食性下降。     

Direct and indirect impacts of wildfire on faunal communities of Mediterranean temporary ponds

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Vertebrate browsing impacts in a threatened montane plant community and implications for management

Montane ecosystems are vulnerable to the removal of vegetation cover through browsing by feral or native vertebrate fauna. The highest elevated peaks of the Stirling Range in Western Australia provide habitat for an endemic plant community, Critically Endangered due to plant disease, frequent fire and an emerging threat of browsing by vertebrate fauna. Survey and camera trapping confirmed the herbivorous feral Rabbit (Oryctolagus cuniculus) and native Quokka (Setonix brachyurus) are present. Dietary analysis through faecal examination revealed contrasting diets and implicates native rather than feral species as responsible for impacts on dicotyledonous species, and in particular those of conservation significance. Exclosure experiments conducted over 1 year revealed significant changes in abundance, cover and height of perennial herbs and an increase in growth and/or reproduction of four threatened endemic plants. Detrimental impacts caused by native browsing fauna are not unprecedented and may be attributed to disequilibria in ecosystem processes due to multiple interacting threats. Montane ecosystems may be particularly vulnerable to browsing due to their naturally slow recovery after disturbance and browsing may also create environmental conditions more conducive to plant disease. For plant species with critically low population numbers, the impact of browsing poses a threat to population persistence and undermines investment into other conservation recovery actions. For effective management, it is critical to determine the relative impact of browsing species present. Where native species are implicated, the physical protection of high value assets in wire exclosures is warranted to complement other recovery actions and ensure effective species and community recovery.     

Limited direct effects of a massive wildfire on its sagebrush steppe bee community

1. Fire can affect bees directly through exposure to heat and smoke. Direct effects include mortality, injury, and displacement affecting at most two generations – adults and any immature progeny present during the fire. To study the direct effects of fire on bees, two criteria must be met. First, bees must be sampled soon after the fire event, before colonists arrive from outside the burn. Second, sampling locations must be far enough into the burned habitat to ensure that bees observed are survivors, and not foragers nesting outside the burn. 2. Bees were systematically sampled far inside (>7 km) and outside the burn perimeter immediately following a massive wildfire that burned primarily at night in sagebrush steppe habitat. Because adult females sleep in their nests, it was hypothesised that females of species with nests >10 cm underground would be safe from lethal heat, whereas females with shallow or above‐ground nests would be vulnerable. It was also hypothesised that fire would kill proportionately more males, as they typically sleep above ground. 3. Adult bees were present at all burned sample sites 14 and 21 days after the fire started. Many females were observed transporting pollen, indicative of active nest provisioning. Among the guild of bees surveyed at wild sunflowers (the only surviving flowering plant), fewer species were active within the burn. Guild composition was significantly altered, particularly by loss or depletion of several (but not all) sunflower specialists. Sex ratios did not shift, possibly due to surviving males aggregating in remaining patches of sunflowers.     

Annual plant community responses to density of small-scale soil disturbances in the Negev Desert of Israel

We investigated whether plant diversity and productivity in small-scale soil disturbances, which is known to be higher than in undisturbed soil, decreases as the density of the disturbances increases. We studied this in an experiment with soil diggings (15 cm diameter and 15 cm depth) dug at a range of densities, on a north- and a south-facing slope of a watershed in the central Negev Desert of Israel. The diggings were similar to the commonly occurring pits made by porcupines (Hystrix indica) as they forage for below-ground plant parts. We used four levels of digging density, within the naturally occurring range in the region, represented by a rectangular plot with rows of diggings dug at four distances between diggings. The plots were laid out in a blocked design with three replications on both slopes, with each block containing all four levels of digging density. In the spring of 1992, 1994 and 1995 we measured plant density, species richness and plant productivity in the diggings, and in adjacent equal-sized undisturbed control areas (“soil matrix”) and on the mounds made by the removed excess soil. Plant density, species richness and productivity of annual plants were higher in the diggings than in the undisturbed matrix, while these responses were very low on the mounds. Plant density, species richness and productivity in the diggings, but not in the matrix or mounds, decreased as digging density increased. This effect varied slightly with location within a watershed and with annual rainfall. The density of seeds captured in the diggings from outside the digging during the 1995 dispersal season decreased with increasing digging density, but only on one of the slopes. At the highest digging density, plant density and species number in the diggings did not decrease down the slope, as expected if interference between diggings in runoff water capture were the cause of the digging density effect. There was a weak decrease in biomass production in 1994–1995 down the slope. We used a simple mathematical model to estimate whether the distribution of rainfall intensities that occurred during the winter of 1994–1995 could result in differences between digging densities in the amount of water captured by the diggings, and whether this could explain the observed effect of digging density. The model showed that there were four events during which less water was captured by the diggings at high digging densities, except in the topmost row of diggings. Soil moisture measurements, however, showed very little difference between diggings at different digging densities. We explain our findings as the result of the interaction between the properties of the disturbance patch with its surroundings, as the diggings capture resources in the form of runoff water, and seeds moved primarily by wind. The additional resources and seeds captured in diggings increase plant density, species richness and productivity relative to the undisturbed matrix. However, the contrast in plant responses between the disturbed patches and undisturbed soil diminishes at higher digging densities. We explain this as interference among diggings at close proximity. As we did not detect a decrease in plant responses down the slopes, we conclude that interference is due to interception of the wind-driven, non-directional flow of seeds. Interception of the down-slope flow of runoff water by upslope diggings is insufficient to affect plant density, determined at the beginning of the season. Later in the season, runoff interception may become important for biomass production. Received: 16 August 1996 / Accepted: 26 October 1997     

Storm impacts on phytoplankton community dynamics in lakes

In many regions across the globe, extreme weather events such as storms have increased in frequency, intensity, and duration due to climate change. Ecological theory predicts that such extreme events should have large impacts on ecosystem structure and function. High winds and precipitation associated with storms can affect lakes via short‐term runoff events from watersheds and physical mixing of the water column. In addition, lakes connected to rivers and streams will also experience flushing due to high flow rates. Although we have a well‐developed understanding of how wind and precipitation events can alter lake physical processes and some aspects of biogeochemical cycling, our mechanistic understanding of the emergent responses of phytoplankton communities is poor. Here we provide a comprehensive synthesis that identifies how storms interact with lake and watershed attributes and their antecedent conditions to generate changes in lake physical and chemical environments. Such changes can restructure phytoplankton communities and their dynamics, as well as result in altered ecological function (e.g., carbon, nutrient and energy cycling) in the short‐ and long‐term. We summarize the current understanding of storm‐induced phytoplankton dynamics, identify knowledge gaps with a systematic review of the literature, and suggest future research directions across a gradient of lake types and environmental conditions.     

Effects of plant species richness and evenness on soil microbial community diversity and function

Understanding the links between plant diversity and soil communities is critical to disentangling the mechanisms by which plant communities modulate ecosystem function. Experimental plant communities varying in species richness, evenness, and density were established using a response surface design and soil community properties including bacterial and archaeal abundance, richness, and evenness were measured. The potential to perform a representative soil ecosystem function, oxidation of ammonium to nitrite, was measured via archaeal and bacterial amoA genes. Structural equation modeling was used to explore the direct and indirect effects of the plant community on soil diversity and potential function. Plant communities influenced archaea and bacteria via different pathways. Species richness and evenness had significant direct effects on soil microbial community structure, but the mechanisms driving these effects did not include either root biomass or the pools of carbon and nitrogen available to the soil microbial community. Species richness had direct positive effects on archaeal amoA prevalence, but only indirect impacts on bacterial communities through modulation of plant evenness. Increased plant evenness increased bacterial abundance which in turn increased bacterial amoA abundance. These results suggest that plant community evenness may have a strong impact on some aspects of soil ecosystem function. We show that a more even plant community increased bacterial abundance, which then increased the potential for bacterial nitrification. A more even plant community also increased total dissolved nitrogen in the soil, which decreased the potential for archaeal nitrification. The role of plant evenness in structuring the soil community suggests mechanisms including complementarity in root exudate profiles or root foraging patterns.     

Pathogen impacts on plant diversity in variable environments

Environmental variability can promote species diversity when species respond differently to environmental conditions, via the storage effect. Pathogens, predators and other shared consumers can also facilitate coexistence when they differentially limit common species. However, it remains unclear how environmental variation and consumers interact to determine species diversity. Here, I use a model based on California annual grassland plants to show that a generalist pathogen with no host specificity can enhance the positive effect of environmental variability on diversity. The model predicts that pathogens can promote diversity by increasing the covariance between the environment and competition, enhancing the storage effect. However, pathogen impacts depend on life history. Pathogens that infect germinating seeds or plants tend to increase the storage effect, whereas those that infect dormant seeds can undermine the storage effect by eliminating population buffering during unfavorable years. These results suggest that pathogens may mediate plant responses to environmental variability and change, and in doing so may maintain diversity.     

A gradient of nutrient enrichment reveals nonlinear impacts of fertilization on Arctic plant diversity and ecosystem function

Rapid environmental change at high latitudes is predicted to greatly alter the diversity, structure, and function of plant communities, resulting in changes in the pools and fluxes of nutrients. In Arctic tundra, increased nitrogen (N) and phosphorus (P) availability accompanying warming is known to impact plant diversity and ecosystem function; however, to date, most studies examining Arctic nutrient enrichment focus on the impact of relatively large (>25x estimated naturally occurring N enrichment) doses of nutrients on plant community composition and net primary productivity. To understand the impacts of Arctic nutrient enrichment, we examined plant community composition and the capacity for ecosystem function (net ecosystem exchange, ecosystem respiration, and gross primary production) across a gradient of experimental N and P addition expected to more closely approximate warming‐induced fertilization. In addition, we compared our measured ecosystem CO₂ flux data to a widely used Arctic ecosystem exchange model to investigate the ability to predict the capacity for CO₂ exchange with nutrient addition. We observed declines in abundance‐weighted plant diversity at low levels of nutrient enrichment, but species richness and the capacity for ecosystem carbon uptake did not change until the highest level of fertilization. When we compared our measured data to the model, we found that the model explained roughly 30%–50% of the variance in the observed data, depending on the flux variable, and the relationship weakened at high levels of enrichment. Our results suggest that while a relatively small amount of nutrient enrichment impacts plant diversity, only relatively large levels of fertilization—over an order of magnitude or more than warming‐induced rates—significantly alter the capacity for tundra CO₂ exchange. Overall, our findings highlight the value of measuring and modeling the impacts of a nutrient enrichment gradient, as warming‐related nutrient availability may impact ecosystems differently than single‐level fertilization experiments.