Alternative oxidases (AOX1a and AOX2) can functionally substitute for plastid terminal oxidase in Arabidopsis chloroplasts

The immutans (im) variegation mutant of Arabidopsis thaliana is caused by an absence of PTOX, a plastid terminal oxidase bearing similarity to mitochondrial alternative oxidase (AOX). In an activation tagging screen for suppressors of im, we identified one suppression line caused by overexpression of AOX2. AOX2 rescued the im defect by replacing the activity of PTOX in the desaturation steps of carotenogenesis. Similar results were obtained when AOX1a was reengineered to target the plastid. Chloroplast-localized AOX2 formed monomers and dimers, reminiscent of AOX regulation in mitochondria. Both AOX2 and AOX1a were present in higher molecular weight complexes in plastid membranes. The presence of these proteins did not generally affect steady state photosynthesis, aside from causing enhanced nonphotochemical quenching in both lines. Because AOX2 was imported into chloroplasts using its own transpeptide, we propose that AOX2 is able to function in chloroplasts to supplement PTOX activity during early events in chloroplast biogenesis. We conclude that the ability of AOX1a and AOX2 to substitute for PTOX in the correct physiological and developmental contexts is a striking example of the capacity of a mitochondrial protein to replace the function of a chloroplast protein and illustrates the plasticity of the photosynthetic apparatus.     

Overexpression of Alternative Oxidase Gene Confers Aluminum Tolerance by Altering the Respiratory Capacity and the Response to Oxidative Stress in Tobacco Cells

Aluminum (Al) stress represses mitochondrial respiration and produces reactive oxygen species (ROS) in plants. Mitochondrial alternative oxidase (AOX) uncouples respiration from mitochondrial ATP production and may improve plant performance under Al stress by preventing excess accumulation of ROS. We tested respiratory changes and ROS production in isolated mitochondria and whole cell of tobacco (SL, ALT 301) under Al stress. Higher capacities of AOX pathways relative to cytochrome pathways were observed in both isolated mitochondria and whole cells of ALT301 under Al stress. AOX1 when studied showed higher AOX1 expression in ALT 301 than SL cells under stress. In order to study the function of tobacco AOX gene under Al stress, we produced transformed tobacco cell lines by introducing NtAOX1 expressed under the control of the cauliflower mosaic virus (CaMV) 35 S promoter in sensitive (SL) Nicotiana tabacum L. cell lines. The enhancement of endogenous AOX1 expression and AOX protein with or without Al stress was in the order of transformed tobacco cell lines > ALT301 > wild type (SL). A decreased respiratory inhibition and reduced ROS production with a better growth capability were the significant features that characterized AOX1 transformed cell lines under Al stress. These results demonstrated that AOX plays a critical role in Al stress tolerance with an enhanced respiratory capacity, reducing mitochondrial oxidative stress burden and improving the growth capability in tobacco cells.     

Heterologous expression of the <Emphasis Type="Italic">Crassostrea gigas</Emphasis> (Pacific oyster) alternative oxidase in the yeast <Emphasis Type="Italic">Saccharomyces cerevisiae</Emphasis>

Alternative oxidase (AOX) is a terminal oxidase within the inner mitochondrial membrane (IMM) present in many organisms where it functions in the electron transport system (ETS). AOX directly accepts electrons from ubiquinol and is therefore capable of bypassing ETS Complexes III and IV. The human genome does not contain a gene coding for AOX, so AOX expression has been suggested as a gene therapy for a range of human mitochondrial diseases caused by genetic mutations that render Complex III and/or IV dysfunctional. An effective means of screening mutations amenable to AOX treatment remains to be devised. We have generated such a tool by heterologously expressing AOX from the Pacific oyster (Crassostrea gigas) in the yeast Saccharomyces cerevisiae under the control of a galactose promoter. Our results show that this animal AOX is monomeric and is correctly targeted to yeast mitochondria. Moreover, when expressed in yeast, Pacific oyster AOX is a functional quinol oxidase, conferring cyanide-resistant growth and myxothiazol-resistant oxygen consumption to yeast cells and isolated mitochondria. This system represents a high-throughput screening tool for determining which Complex III and IV genetic mutations in yeast will be amenable to AOX gene therapy. As many human genes are orthologous to those found in yeast, our invention represents an efficient and cost-effective way to evaluate viable research avenues. In addition, this system provides the opportunity to learn more about the localization, structure, and regulation of AOXs from animals that are not easily reared or manipulated in the lab.     

Interaction between plastid and mitochondrial retrograde signalling pathways during changes to plastid redox status

Mitochondria and chloroplasts depend upon each other; photosynthesis provides substrates for mitochondrial respiration and mitochondrial metabolism is essential for sustaining photosynthetic carbon assimilation. In addition, mitochondrial respiration protects photosynthesis against photoinhibition by dissipating excess redox equivalents from the chloroplasts. Genetic defects in mitochondrial function result in an excessive reduction and energization of the chloroplast. Thus, it is clear that the activities of mitochondria and plastids need to be coordinated, but the manner by which the organelles communicate to coordinate their activities is unknown. The regulator of alternative oxidase (rao1) mutant was isolated as a mutant unable to induce AOX1a expression in response to the inhibitor of the mitochondrial cytochrome c reductase (complex III), antimycin A. RAO1 encodes the nuclear localized cyclin-dependent kinase E1 (CDKE1). Interestingly, the rao1 mutant demonstrates a genome uncoupled phenotype also in response to redox changes in the photosynthetic electron transport chain. Thus, CDKE1 was shown to regulate both LIGHT HARVESTING COMPLEX B (LHCB) and ALTERNATIVE OXIDASE 1 (AOX1a) expression in response to retrograde signals. Our results suggest that CDKE1 is a central nuclear component integrating mitochondrial and plastid retrograde signals and plays a role in regulating energy metabolism during the response to stress.     

What is critical for plant thermogenesis? Differences in mitochondrial activity and protein expression between thermogenic and non-thermogenic skunk cabbages

Thermogenesis during the blooming of inflorescence is found in several but not all aroids. To understand what is critical for thermogenesis, we investigated the difference between thermogenic and non-thermogenic skunk cabbages (Symplocarpus renifolius and Lysichiton camtschatcensis), which are closely related in morphology and phylogeny. Critical parameters of mitochondrial biogenesis, including density, respiratory activity, and protein expression were compared between these two species. Mitochondrial density, respiratory activity, and the amount of alternative oxidase (AOX) in L. camtschatcensis spadix mitochondria were lower than in S. renifolius spadix mitochondria, while the level of uncoupling protein (UCP) was higher. AOX and UCP mRNAs in L. camtschatcensis were constitutively expressed in various tissues, such as the spadix, the spathe, the stalk, and the leaves. cDNA encoding two putative thermogenic proteins, AOX and UCP were isolated from L. camtschatcensis, and their primary structure was analyzed by multiple alignment and phylogenetic tree reconstruction. AOX and UCP protein of two the skunk cabbage species are closely related in structure, compared with other isoforms in thermogenic plants. Our results suggest that mitochondrial density, respiratory activity, and protein expression, rather than the primary structure of AOX or UCP proteins, may play critical roles in thermogenesis in plants.     

Characterization of oxidative phosphorylation in the colorless chlorophyte Polytomella sp.: Its mitochondrial respiratory chain lacks a plant-like alternative oxidase

The presence of an alternative oxidase (AOX) in Polytomella sp., a colorless relative of Chlamydomonas reinhardtii, was explored. Oxygen uptake in Polytomella sp. mitochondria was inhibited by KCN (94%) or antimycin (96%), and the remaining cyanide-resistant respiration was not blocked by the AOX inhibitors salicylhydroxamic acid (SHAM) or n-propylgallate. No stimulation of an AOX activity was found upon addition of either pyruvate, α-ketoglutarate, or AMP, or by treatment with DTT. An antibody raised against C. reinhardtii AOX did not recognized any polypeptide band of Polytomella sp. mitochondria in Western blots. Also, PCR experiments and Southern blot analysis failed to identify an Aox gene in this colorless alga. Finally, KCN exposure of cell cultures failed to stimulate an AOX activity. Nevertheless, KCN exposure of Polytomella sp. cells induced diminished mitochondrial respiration (20%) and apparent changes in cytochrome c oxidase affinity towards cyanide. KCN-adapted cells exhibited a significant increase of a-type cytochromes, suggesting accumulation of inactive forms of cytochrome c oxidase. Another effect of KCN exposure was the reduction of the protein/fatty acid ratio of mitochondrial membranes, which may affect the observed respiratory activity. We conclude that Polytomella lacks a plant-like AOX, and that its corresponding gene was probably lost during the divergence of this colorless genus from its close photosynthetic relatives.     

Conserved Active Site Sequences in Arabidopsis Plastid Terminal Oxidase (PTOX): IN VITRO AND IN PLANTA MUTAGENESIS STUDIES

The plastid terminal oxidase (PTOX) is distantly related to the mitochondrial alternative oxidase (AOX). Both are members of the diiron carboxylate quinol oxidase (DOX) class of proteins. PTOX and AOX contain 20 highly conserved amino acids, six of which are Fe-binding ligands. We have previously used in vitro and in planta activity assays to examine the functional importance of the Fe-binding sites. In this report, we conduct alanine-scanning mutagenesis on the 14 other conserved sites using our in vitro and in planta assay procedures. We found that the 14 sites fall into three classes: (i) Ala-139, Pro-142, Glu-171, Asn-174, Leu-179, Pro-216, Ala-230, Asp-287, and Arg-293 are dispensable for activity; (ii) Tyr-234 and Asp-295 are essential for activity; and (iii) Leu-135, His-151, and Tyr-212 are important but not essential for activity. Our data are consistent with the proposed role of some of these residues in active site conformation, substrate binding, and/or catalysis. Titration experiments showed that down-regulation of PTOX to ∼3% of wild-type levels did not compromise plant growth, at least under ambient growth conditions. This suggests that PTOX is normally in excess, especially early in thylakoid membrane biogenesis.Alternative oxidase (AOX)² is a terminal oxidase that functions in the alternative pathway of mitochondrial respiration (1). It catalyzes the four-electron reduction of oxygen to water and branches from the cytochrome pathway at the level of the quinone pool (1–5). The alternative oxidase is found in two of the three domains of life, Bacteria and Eucarya, but not in Archaea; among Eucarya it is found in all kingdoms (i.e. plants, animals, fungi, protists) (4, 5). It is thought that AOX is activated when the cytochrome pathway becomes saturated, for instance, during oxidative stress when the inner membrane is highly energized and prone to the production of reactive oxygen species (ROS) (3, 6–9).The IMMUTANS locus of Arabidopsis codes for a plastid homolog of AOX (10, 11). IM-like proteins have subsequently been found in a diverse array of plant, algal, and cyanobacterial species; IM does not appear to be present in animals (12). Also similar to AOX, IM functions as a terminal oxidase, transferring electrons from the plastoquinol (PQ) pool to molecular oxygen (13–17). IM is thus frequently designated “PTOX” (plastid terminal oxidase). (To avoid confusion, we will use the term PTOX in this report and IMMUTANS when describing the Arabidopsis gene for PTOX.) Current thinking is that PTOX is an important alternative electron sink in plastid membranes and that it lies at the intersection of many redox pathways. These include the desaturation reactions of carotenoid biosynthesis and chlororespiration (18, 19). Reminiscent of AOX, PTOX has been hypothesized to serve as a “safety valve” for the dissipation of excess electron flow, e.g. during stress (20–23). Consistent with this view, studies in tomato ghost (the ortholog of the Arabidopsis im mutant) reveal that lack of PTOX in young seedlings as well as in mature tomato leaves results in increased sensitivity to high light stress due to disturbances in the redox status of the plastoquinone pool (23). In contrast, in vivo chlorophyll fluorescence measurements reveal that modulating IMMUTANS expression and/or protein accumulation does not alter the flux of intersystem electrons during steady state photosynthesis in Arabidopsis nor does it afford photoprotection (17). However, IMMUTANS expression is strongly regulated by developmental factors in Arabidopsis, and the phenotype of im strongly argues that PTOX function in Arabidopsis is required early in chloroplast biogenesis. Together, these studies suggest that PTOX functions in a developmental- and species-specific manner.AOX and PTOX are members of the DOX (non-heme diiron carboxylate quinol oxidase) family of proteins (4, 5, 24–29). By analogy to crystal structure determinations of non-plant members of this family, it has been proposed that the diiron centers of AOX and PTOX are coordinated by four carboxylate and two His residues on a four-helix bundle (26–28). Sequence alignments have revealed that the six putative Fe-binding residues are highly conserved in the sequences of all AOX and PTOX proteins examined to date. In addition, nearly all PTOX enzymes contain a 16-amino acid domain near the C terminus that is highly conserved, but that is not found in AOX (13). Curiously, this sequence corresponds precisely to exon 8 of the gene.We previously used PTOX as a model to test the functional significance of the conserved Fe-binding and exon 8 sequences (13). These experiments were facilitated by the availability of two important tools: 1) an in vitro activity assay, developed by Josse et al. (15, 18); and 2) null alleles of the Arabidopsis immutans (im) mutant, which made in planta mutagenesis experiments possible. Arabidopsis im mutants have a light-sensitive green- and white-variegation due to action of a nuclear recessive gene -enhanced light intensities promote white sector formation (30–32). The white sectors contain abnormal, photooxidized plastids as a consequence of a lack of colored carotenoid production, while the green sectors contain morphologically normal chloroplasts. When transformed with a wild-type IM sequence, im plants revert to an all-green phenotype. Mutagenized copies of IM can thus be tested for their ability to normalize the im variegation and restore a wild type appearance. Our previous in vitro and in planta experiments showed that the six amino acids that bind iron do not tolerate change, even conservative ones, and that the exon 8 domain is required for PTOX activity and stability (13).In this report, we examine 14 other amino acids that are perfectly conserved, or nearly so, in the sequences of all AOX and PTOX reported to date: Leu-135, Pro-142, Ala-139, His-151, Glu-171, Asn-174, Leu-179, Tyr-212, Pro-216, Ala-230, Tyr-234, Asp-287, Arg-293, Asp-295 (numbering refers to the Arabidopsis PTOX sequence). Most of these residues are predicted to reside in close proximity to the six Fe-binding sites. In this report, we test the functional significance of these sites by in vitro and in planta alanine-scanning mutagenesis, and report that very few of these sites are absolutely essential for activity. In addition, some mutant enzymes are defective in vitro, but are able to complement im. RNAi, antisense, and co-suppression experiments showed that transgenic plants with less than 3% of wild-type PTOX levels produce normal appearing plants. Considered together, the data suggest that PTOX is normally in excess, especially during the process of thylakoid formation early in leaf development when sector formation is established (33).     

Functional properties of the Ustilago maydis alternative oxidase under oxidative stress conditions

The mitochondrial respiratory chain of Ustilago maydis contains two terminal oxidases, the cytochrome c oxidase (COX) and the alternative oxidase (AOX). To understand the biochemical events that control AOX activity, we studied the regulation and function of AOX under oxidative stress. The activity of this enzyme was increased by both pyruvate (K₀₅ = 2.6 mM) and purine nucleotides (AMP, K₀₅ = 600 μM) in mitochondria using succinate as respiratory substrate. When U. maydis cells were grown in the presence of antimycin A, the amount of AOX in mitochondria was markedly increased and its selectivity towards AMP and pyruvate changed, suggesting that post-translational events may play a role in the regulation of AOX activity under stress conditions. Addition of antimycin A to isolated mitochondria induced the inactivation of AOX, the formation of lipid peroxides and the loss of glutathione from mitochondria. The two last processes are probably related with the time dependent inactivation of AOX, in agreement with the inhibition of the enzyme by tert-butyl hydroperoxide. Our results suggest that the in vivo operation of AOX in U. maydis depends on the mitochondrial antioxidant machinery, including the glutathione linked systems.     

Intracellular Distribution of Heat Shock Proteins in Pigeon Pea (Cajanus cajan)

The proteins synthesized In response to higher temperature In pigeon pea (Cajanus cajan) plants have been studied with respect to their Intracellular localization using root tissue. The heat shock proteins (hsps) of 18, 20, 22 and 24 kD were found to be associated with mitochondrial and membrane fractions, while the 60, 70 and 81 kD hsps were found In the soluble fraction. No evidence for the presence of hsps among the proteins synthesized in organello by isolated mitochondria could be obtained. Low molecular weight hsps (18, 20, 22 and 24 kD) were found associated with mitochondria Isolated from the heat shocked tissue suggesting that these hsps may have been transported post-translationally into mitochondria.     

Selective Homo- and Heteromer Interactions between the Multiple Organellar RNA Editing Factor (MORF) Proteins in Arabidopsis thaliana

RNA editing in plastids and mitochondria of flowering plants requires pentatricopeptide repeat proteins (PPR proteins) for site recognition and proteins of the multiple organellar RNA editing factor (MORF) family as cofactors. Two MORF proteins, MORF5 and MORF8, are dual-targeted to plastids and mitochondria; two are targeted to plastids, and five are targeted to mitochondria. Pulldown assays from Arabidopsis thaliana tissue culture extracts with the mitochondrial MORF1 and the plastid MORF2 proteins, respectively, both identify the dual-targeted MORF8 protein, showing that these complexes can assemble in the organelles. We have now determined the scope of potential interactions between the various MORF proteins by yeast two-hybrid, in vitro pulldown, and bimolecular fluorescence complementation assays. The resulting MORF-MORF interactome identifies specific heteromeric MORF protein interactions in plastids and in mitochondria. Heteromers are observed for MORF protein combinations affecting a common site, suggesting their functional relevance. Most MORF proteins also undergo homomeric interactions. Submolecular analysis of the MORF1 protein reveals that the MORF-MORF protein connections require the C-terminal region of the central conserved MORF box. This domain has no similarity to known protein modules and may form a novel surface for protein-protein interactions.     

Effects of photoperiod on energy budgets and thermogenesis in Mongolian gerbils (Meriones unguiculatus)

(1)

To investigate the role of photoperiod on the regulation of energy budgets and thermogenesis in Mongolian gerbils, body mass (BM), body fat mass (BFM), basal metabolic rate (BMR), nonshivering thermogenesis (NST), gross energy intake (GEI), mitochondrial cytochrome c oxidase (COX) activity and uncoupling protein1 (UCP1) content of brown adipose tissue (BAT), and serum tri-iodothyronine (T₃), thyroxine (T₄) and leptin levels were measured.     

Seasonal regulations of resting metabolic rate and thermogenesis in striped hamster (Cricetulus barabensis)

(1)

Resting metabolic rate (RMR), nonshivering thermogenesis (NST) and mitochondria cytochrome c oxydase (COX) activity of brown adipose tissue (BAT), as well as weight of skin and fur were measured in striped hamsters (Cricetulus barabensis) that were live-trapped in the summer, autumn, winter and spring.     

Significant enhancement of lignan accumulation in hairy root cultures of Linum album using biotic elicitors

Linum album has been shown to accumulate some lignans with antiviral and anticancer properties such as podophyllotoxin (PTOX) and 6-methoxy podophyllotoxin (MPTOX). In this research, we examined the effects of fungal elicitors on the production of lignans in L. album hairy root cultures. The biosynthesis of lignans was differentially affected by fungal elicitors. Fusarium graminearum extract induced the highest increase of PTOX, 190 μg g^?1 dry weight (DW), and lariciresinol, 260 μg g^?1 DW, which was two-fold and three-fold greater than the untreated control, respectively, while Trichoderma viride extract enhanced the accumulation of MPTOX, instead of PTOX, up to 160 µg g^?1 DW, which was 2.4-fold greater than the control. The enhancing effects of fungal elicitors on lignans production was correlated with the increased expression of some key genes involved in the biosynthesis of these compounds, phenylalanine ammonia-lyase, cinnamoyl-CoA reductase, cinnamyl-alcohol dehydrogenase and pinoresinol-lariciresinol reductase.     

Intracellular localization of VDAC proteins in plants

Voltage-dependent anion channels (VDACs) are porin-type -barrel diffusion pores. They are prominent in the outer membrane of mitochondria and facilitate metabolite exchange between the organelle and the cytosol. Here we studied the subcellular distribution of a plant VDAC-like protein between plastids and mitochondria in green and non-green tissue. Using in vitro studies of dual-import into mitochondria and chloroplasts as well as transient expression of fluorescence-labeled polypeptides, it could be clearly demonstrated that this VDAC isoform targets exclusively to mitochondria and not to plastids. Our results support the idea that plastids evolved a concept of solute exchange with the cytosol different from that of mitochondria.Abbreviations AOX Alternative oxidase - p Precursor form - POM36 Putative outer mitochondrial membrane proteins of 36 kDa - SSU Small subunit of ribulose-1,5-bisphosphate carboxylase-oxygenase (Rubisco) - VDAC Voltage-dependent anion channel     

Xenotopic expression of alternative oxidase (AOX) to study mechanisms of mitochondrial disease

The mitochondrial respiratory chain or electron transport chain (ETC) facilitates redox reactions which ultimately lead to the reduction of oxygen to water (respiration). Energy released by this process is used to establish a proton electrochemical gradient which drives ATP formation (oxidative phosphorylation, OXPHOS). It also plays an important role in vital processes beyond ATP formation and cellular metabolism, such as heat production, redox and ion homeostasis. Dysfunction of the ETC can thus impair cellular and organismal viability and is thought to be the underlying cause of a heterogeneous group of so-called mitochondrial diseases. Plants, yeasts, and many lower organisms, but not insects and vertebrates, possess an enzymatic mechanism that confers resistance to respiratory stress conditions, i.e., the alternative oxidase (AOX). Even in cells that naturally lack AOX, it is autonomously imported into the mitochondrial compartment upon xenotopic expression, where it refolds and becomes catalytically engaged when the cytochrome segment of the ETC is blocked. AOX was therefore proposed as a tool to study disease etiologies. To this end, AOX has been xenotopically expressed in mammalian cells and disease models of the fruit fly and mouse. Surprisingly, AOX showed remarkable rescue effects in some cases, whilst in others it had no effect or even exacerbated a condition. Here we summarize what has been learnt from the use of AOX in various disease models and discuss issues which still need to be addressed in order to understand the role of the ETC in health and disease.     

The Relationship Between the Activity of Cyanide-resistant Respiration and the Expression of Alternative Oxidase in Different Organs of Mung Bean Seedlings

Twelve peptides, including eight conservative amino acid residues in the amino acid sequence of hydrophilic S helix of the alternative oxidase (AOX), were synthesized by solid-phase method. The polypeptide was coupled to αchymotrypsinogen, and the antibodies against this complex were obtained in rabbit. By using these antibodies, which were raised to immunoreact with total proteins of purified mitochondria from different organs of mung bean (Phaseolous radiatus L.) seedlings, it was found that there were two hybridizable AOX fractions in the mitochondria of mung bean seedlings. Their molecular weight was about 35 kD and 38 kD, respectively. Moreover, among the respiratory parameters obtained in hypocotyl, true leaf and cotyledon of mung bean seedlings true leaf had the highest total respiration (Vt), alternative pathway (AP) capacity(Valt) and the activity of AP (ρValt). Hypocotyl Vt and ρValt were the lowest, but its Vt was higher than that of the cotyledon. The activities of total and cyanide-resistant respiration were consistant with the analysis of Western blotting of AOX expression. The highest Vt and ρValt in true leaf were accompanied by two hybridizable polypeptides of AOX protein. The next was cotyledon Vt and ρValt with only one 38 kD hybridizable polypeptide of AOX protein. Hypocotyl Vt and ρValt were the lowest and its immunobloting band was similar to that of the cotyledon, but the expression amount of 38 kD protein was less than that of the cotyledon. The 35 kD AOX may make the main contribution to the true leaf ρValt.     

Chemical modification of mitochondria: I. Specific labeling by 2,4-dinitro-5-(bromo-[2-14C]acetoxyethoxy) phenol

The uncoupler dinitrobromoacetoxyethoxyphenol (DNBP) has been synthesized and found to label rapidly and specifically a small number of cysteine residues in rat liver mitochondria. The labeling reaction was essentially complete in a few minutes. Only eight of the mitochondrial polypeptide bands, of MW 97, 58, 52, 43, 30, 26, 22, 13 × 10³, respectively, as separated by SDS gel electrophoresis, were found to carry the radioactive label. In each case, the label which survived acid hydrolysis was covalently bound to cysteine residues through alkylation reaction. Under the present experimental conditions, only 0.45 mole of the label was covalently bound to mitochondrial protein per mole of cytochrome aa₃ and only 1 out of about 650 sulfhydryl groups was so labeled. Consideration of the specificity of the labeling and the observed time-dependence of DNBP-stimulated respiration suggests that the labeled protein molecules are either at or very close to the mitochondrial coupling sites and probably play an important role in the primary energy transduction process.