A Correlation to Estimate the Bioventing Degradation Rate Constant

Estimating the biodegradation rate is essential when designing a bioremediation strategy for petroleum-contaminated sites, and when evaluating assessment guidelines. However, estimating the biodegradation rate is difficult as the rate constant varies from site to site due to changing site conditions, which include soil type, biological activity, and type of contaminant. Accordingly, bench-scale biodegradation studies were completed using respirometers to measure first-order biodegradation rate constants for gasoline in several soils over 30 days of incubation. A total of seven soils were tested at various gasoline concentrations with constant nutrient ratios and water content. No microbial inhibition was observed for the range of gasoline concentrations studied. Analysis showed that the statistically significant parameters were the initial population of petroleum-degrading microorganisms and the organic matter content. The developed empirical correlation is a simple tool that practioners can use to estimate the biodegradation rate without conducting lengthy and expensive experiments.     

Large-scale bioventing degradation rates of petroleum hydrocarbons and determination of scale-up factors

Bioventing is a cutting edge, nondestructive treatment method that uses indigenous soil microorganisms in situ to remediate petroleum hydrocarbons in the unsaturated soil zone. Transferring the application of this technology to a field environment still has some uncertainties due to scale-up challenges. In order to identify the scale-up factor, a 80-kg soil reactor system was developed, consisting of a custom-made reactor, climate chamber, low-flow venting system, and an off-gas capture device. Sandy and clayey soils were tested with known concentrations of spiked synthetic gasoline. Various environmental conditions were monitored, which included moisture levels, pH, microbial levels, and nutrient and oxygen levels. Results show a second-stage degradation rate similar to the degradation rate obtained from research conducted with a 4-kg reactor, giving an average scale-up factor of 2.3 ± 0.4. The completed research shows that working with a 80-kg laboratory reactor is feasible, yet not always necessary for the development of scale-up factors. A complimentary study with aged soil contaminants was performed and yielded degradation rates that were significantly reduced.     

Biodegradation of Dinoseb (2-sec-Butyl-4,6-Dinitrophenol) in Several Idaho Soils with Various Dinoseb Exposure Histories

We examined the ability of native microorganisms in various Idaho soils to degrade dinoseb and studied some physical and chemical soil characteristics which might affect the biodegradation process. Dinoseb biodegradation rates were higher in silt-loam soils than in loamy-sand soils. Biodegradation rates were not influenced by previous exposure of the soils to dinoseb. Bacterial numbers, measured by standard plate counts on soil extract agar, were the best predictors of biodegradation rates, accounting for 53% of the variability between soils. Soil nitrate-N inhibited dinoseb biodegradation and accounted for 39% of the variability. Sorption of dinoseb to soil surfaces also appeared to influence biodegradation rates. No other soil parameter contributed significantly to the variability in biodegradation rates. Persistence of dinoseb in one soil was due to inhibition of biodegradation by nitrate, while in another soil persistence appeared to be due to lack of native degradative microorganisms.     

喀斯特不同植被恢复阶段土壤有机酸季节变化与有效氮磷的关系

植物分泌有机酸在提高土壤养分有效性方面起到重要作用。为了解喀斯特地区不同植被恢复阶段土壤有机酸含量季节性变化与氮磷有效性的关系,在灌木林和原生林各选择3种优势植物,测定雨季和旱季两个季节根际土和非根际土的有机酸含量、碳氮磷含量和比值、有效性氮磷含量及微生物生物量碳。结果表明:原生林植物根际土的草酸含量高于灌木林,而苹果酸和乙酸含量则低于灌木林;根际土草酸含量均高于非根际土; 2个植被根际土和非根际土的草酸含量在雨季高于旱季,而苹果酸和乙酸含量则低于旱季;土壤草酸含量与有机碳、全氮、全磷和N∶P值呈显著正相关,与C∶N呈显著负相关;土壤有效氮和有效磷与草酸和微生物生物量碳呈显著正相关。上述结果表明,植物分泌有机酸的季节性变化与土壤养分状态和自身养分需求相关,而有机酸耦合微生物对养分有效性的提高具有积极的作用。因此,根际土的有机酸季节变化可能是喀斯特生态系统中植物适应土壤养分限制的一种重要机制。     

Soil greenhouse gas,carbon content,and tree growth response to biochar amendment in western United States forests

Restoring overstocked forests by thinning and pyrolyzing residual biomass produces biochar and other value‐added products. Forest soils amended with biochar have potential to sequester carbon (C), improve soil quality, and alter greenhouse gas (GHG) emissions without depleting nutrient stocks. Yet, few studies have examined the effects of biochar on GHG emissions and tree growth in temperate forest soils. We measured GHG emissions, soil C content, and tree growth at managed forest sites in Idaho, Montana, and Oregon. We applied biochar amendments of 0, 2.5, or 25 Mg/ha to the forest soil surface. Flux of carbon dioxide and methane varied by season; however, neither were affected by biochar amendment. Flux of nitrous oxide was not detected at these nitrogen‐limited and unfertilized forest sites. Biochar amendment increased soil C content by 41% but did not affect tree growth. Overall, biochar had no detrimental effects on forest trees or soils. We conclude that biochar can be used harmlessly for climate change mitigation in forests by sequestering C in the soil.     

Biodegradation of Diesel Fuel in Soil Under Various Nitrogen Addition Regimes

Bioremediation is a growing technology for treating fuel-contaminated soils. Many biological, physical, and chemical parameters control the rate and efficiency of this process, including type and concentration of contaminants, temperature, oxygen content, and nutrient status. This study investigated the effect that nitrogen sources and concentrations had on the degradation rate of diesel fuel in nutrient limited soil at two carbon-to-nitrogen ratios. The different sources of nitrogen studied were ammonium nitrate, ammonium sulfate, potassium nitrate, urea, and urea oligomers (control release fertilizer). Laboratory experiments were conducted on field-contaminated soil using sealed bioreactors at a controlled temperature of 25°C. For both carbon-to-nitrogen ratios tested, hydrocarbon degradation rates were the highest for the ammonium sulfate (20:1 at 0.032?d^?1; 40:1 at 0.019d^?1) and urea treatments (20:1 at 0.025?d^?1; 40:1 at0.011?d^?1). A degradation rate correlation as a function of nitrate and ammonia concentrations was developed. The correlation suggests the occurrence of nitrate inhibition at elevated nitrate concentrations.     

Effects of microorganism on carbon,nitrogen and phosphorus of Dodonaea viscosa and the soils from different elevations in Yuanmou,Yunnan, China

Aims Understanding the effects of soil microorganism at different elevations on plant C:N:P stoichiometry can help us to understand the plant-soil interactions in the context of climate change. Our aim was to quantify the independent and interactive effects of soil microbial communities and temperatures on the C, N, and P in the leaves of Dodonaea viscosa—a global widespread species. Methods Rhizosphere soils of D. viscosa were collected from two elevation zones in Yuanmou County, Yunnan Province. A 2 × 3 factorial experiment with six replications was conducted using climate chambers. The leaf C, N and P contents and the soil properties were measured after three months of the treatments. Important findings Compared with the autoclaved treatment, inoculated rhizosphere soils from both high and low elevations had higher nutrient absorption, especially P uptake. Temperature produced no significant effect on leaf C:N:P stoichiometry, but the interactive effect of temperature and microbial treatment appeared significant. For inoculated rhizosphere soils from high elevation, temperature had no significant effect on leaf C:N:P stoichiometry. For inoculated rhizosphere soils from low elevation, leaf N and P contents under low temperature were significantly lower than those with warmer soils. The promoting effect of soil microorganisms on nutrient uptake may be due to the direct effect of beneficial microorganisms (e.g., mycorrhizal fungi), but not through the alteration of nutrient cycling process. Because D. viscosa in the inoculated rhizosphere soils absorbed more N and P from the soil than those in autoclaved soil, the available N and P in inoculated rhizosphere soils were lower than those in autoclaved soils. As predicted future temperature will be lower in the studied region, the growth of D. viscosa may be negatively affected through plant-microbe feedbacks.     

A method for the detection and analysis of growth patterns of microorganisms in soil.

A fluorescence-staining technique using the magnesium salt of 8-anilino-1-naphthalene sulfonic acid is described and used to follow the changes in the distribution patterns of microorganisms in soils. A statistical procedure was used to determine the occurrence of significant differences in clumping of bacteria (i.e., production of colonies) in different regions of artificial soil-aggregate systems treated with nutrient solutions and also with a herbicide, Linuron. The response of soil microorganisms to glucose amendment was most marked in the aerobic, outer zone of aggregates. Linuron inhibited colony formation in aggregates treated with the herbicide. The method allows continued observations to be made on the same soil sample at intervals during incubation and os can be used to determine growth rates, inhibitory effects of chemicals, distribution patterns in soils, effects of added nutrients, and other effects where growth in situ is important.     

Herbivore and nutrient control of lawn and bunch grass distributions in a southern African savanna

In African savannas, bottom-up soil nutritional factors and top-down herbivory have both been suggested to control the distribution patterns of bunch and lawn grasses. We tested the separate and combined roles of these factors on grassland distribution in a South African savanna by focusing on three main objectives, namely (1) are grazing patches and lawns restricted to specific soils or sites, (2) does herbivory alter rates of nutrient cycling which facilitates lawns and (3) are there any differences in foliage quality between lawn and bunch grass-dominated sites that might influence animals in choosing to feed on lawns? We set up ten sites along a grazing gradient in the Hluhluwe-iMfolozi Park in KwaZulu-Natal, South Africa. At these sites, we measured total soil nutrients, soil nutrient turnover rates and grass foliage nutrient concentrations. We found that in the Hluhluwe-iMfolozi Park the spatial distribution of lawn and bunch grassland types appears to be an animal-driven phenomenon and not dependent on specific soil properties. The short-structured and distinct species found in lawns do not appear to be restricted to nutrient-enriched patches. However, the grasses of these lawns had significantly higher nutrient concentrations, in their foliage, which might explain the high attraction to these patches by herbivores. We also did not find any animal-induced stimulation of nutrient cycling rates that are often associated with lawn grass species.     

Microbial degradation of hydrocarbons in the environment.

The ecology of hydrocarbon degradation by microbial populations in the natural environment is reviewed, emphasizing the physical, chemical, and biological factors that contribute to the biodegradation of petroleum and individual hydrocarbons. Rates of biodegradation depend greatly on the composition, state, and concentration of the oil or hydrocarbons, with dispersion and emulsification enhancing rates in aquatic systems and absorption by soil particulates being the key feature of terrestrial ecosystems. Temperature and oxygen and nutrient concentrations are important variables in both types of environments. Salinity and pressure may also affect biodegradation rates in some aquatic environments, and moisture and pH may limit biodegradation in soils. Hydrocarbons are degraded primarily by bacteria and fungi. Adaptation by prior exposure of microbial communities to hydrocarbons increases hydrocarbon degradation rates. Adaptation is brought about by selective enrichment of hydrocarbon-utilizing microorganisms and amplification of the pool of hydrocarbon-catabolizing genes. The latter phenomenon can now be monitored through the use of DNA probes. Increases in plasmid frequency may also be associated with genetic adaptation. Seeding to accelerate rates of biodegradation has been shown to be effective in some cases, particularly when used under controlled conditions, such as in fermentors or chemostats.     

Impact of application of organic waste materials on microbial and enzyme activities of mine soils in the Lusatian coal mining region

The objective of the present work was to study the short-term stimulation of microbial and enzyme activity in mine soils by application of organic waste materials in lysimeter and mesocosm studies. The mine soils derived from tertiary and quaternary deposits were ameliorated with brown coal filter ash (tertiary deposits) and lime (quaternary deposits). At the beginning of recultivation the soils were treated with varying amounts of sewage sludge, coal sludge, composted sewage sludge and compost to a depth of 30 cm. In the first 2 years after application of organic waste materials we found a very low level of microbial properties especially in the sandy materials from quaternary deposits but a significant increase in microbial respiration, substrate induced respiration and enzyme activities like invertase and alkaline phosphatase with increasing application rates of sewage sludge, compost and sewage sludge mixed with coal sludge. This can be explained by an increase in organic matter and nutrient content of the soils and an improvement of soil physical properties such as water and nutrient retention capacity. Additionally it can be assumed, that constituents of the coal admixtures of tertiary deposits can be mineralised or converted by the soil microorganisms. In the tertiary materials ameliorated with brown coal ash the highest amounts of microbial and enzyme activities were measured after application of nitrogen-rich sewage sludge or very high amounts of mature compost mainly consisting of green waste. Compared with sewage sludge the stimulating effects of composted sewage sludge were quite lower because of organic matter fragmentation and a reduced energy and nutrient supply to soil microorganisms. This revised version was published online in June 2006 with corrections to the Cover Date.     

Effect of nitrogen and phosphorus addition on phenanthrene biodegradation in four soils

Phenanthrene mineralization rates were found to vary widely among four soils; differences in soil nutrient levels was one hypothesis to explain this variation. To test this hypothesis, phenanthrene mineralization rates were measured in these soils with, and without, added nitrogen and phosphorus. Mineralization rates either remained unchanged or were depressed by the addition of nitrogen and phosphorus. Phenanthrene degradation rates remained unchanged in the soil which had the highest indigenous levels of nitrogen and phosphorus and which showed the largest increase in phosphorus levels after nutrients were added. The soils in which degradation rates were depressed had lower initial phosphorus concentrations and showed much smaller or no measurable increase in phosphorus levels after nutrients were added to the soils. To understand the response of phenanthrene degradation rates to added nitrogen and phosphorus, it may be necessary to consider the bioavailability of added nutrients and nutrient induced changes in microbial metabolism and ecology.     

Hybridization Analysis of Microbial DNA from Fuel Oil–Contaminated and Noncontaminated Soil

Abstract The enrichment of several genes (xylE, nahAcd, todC1C2BA, tmoABCDE, alkB) that encode enzymes responsible for key steps in the degradation of hydrocarbons, and one gene specific to rRNA group I of the genus Pseudomonas, was studied in DNA extracted from a fuel oil–contaminated field site, and in laboratory microcosms (with the exception of alkB). Toluene, ethylbenzene, xylene, and naphthalene concentrations were related to the extent of hybridization of the genes in the field studies. Significant differences were observed in the extent of hybridization of some of the genes between contaminated and noncontaminated samples. In the microcosm studies, gasoline at rates ranging from 0.5 mg to 125 mg gasoline/g of soil as applied to soils, and the changes in hybridization intensity of these genes monitored with time. The lower threshold of gene enrichment of these genes in response to gasoline addition was below 0.5 mg/g soil. Small increases were observed at the 0.5-mg exposure level, but hybridization intensity quickly decreased to levels below detection 6–8 days after addition of the gasoline. A dose-response effect was observed from treatments with gasoline concentrations ranging from 0.5 to 35 mg/g soil. Inhibition by toxic components in gasoline was observed at 75 and 125 mg/g soil levels. Hybridization of the Pseudomonas group 1 probe to field DNA was not significantly enriched in the contaminated field site, although these sequences were enriched in the microcosm studies. Among the genes tested, xylE was the most sensitive indicator of low levels of fuel oil contamination. Received: 23 July 1996; Accepted 9 October 1996     

Short-term carbon input increases microbial nitrogen demand,but not microbial nitrogen mining,in a set of boreal forest soils

Rising carbon dioxide (CO₂) concentrations and temperatures are expected to stimulate plant productivity and ecosystem C sequestration, but these effects require a concurrent increase in N availability for plants. Plants might indirectly promote N availability as they release organic C into the soil (e.g., by root exudation) that can increase microbial soil organic matter (SOM) decomposition (“priming effect”), and possibly the enzymatic breakdown of N-rich polymers, such as proteins, into bio-available units (“N mining”). We tested the adjustment of protein depolymerization to changing soil C and N availability in a laboratory experiment. We added easily available C or N sources to six boreal forest soils, and determined soil organic C mineralization, gross protein depolymerization and gross ammonification rates (using ¹⁵N pool dilution assays), and potential extracellular enzyme activities after 1 week of incubation. Added C sources were ¹³C-labelled to distinguish substrate from soil derived C mineralization. Observed effects reflect short-term adaptations of non-symbiotic soil microorganisms to increased C or N availability. Although C input promoted microbial growth and N demand, we did not find indicators of increased N mobilization from SOM polymers, given that none of the soils showed a significant increase in protein depolymerization, and only one soil showed a significant increase in N-targeting enzymes. Instead, our findings suggest that microorganisms immobilized the already available N more efficiently, as indicated by decreased ammonification and inorganic N concentrations. Likewise, although N input stimulated ammonification, we found no significant effect on protein depolymerization. Although our findings do not rule out in general that higher plant-soil C allocation can promote microbial N mining, they suggest that such an effect can be counteracted, at least in the short term, by increased microbial N immobilization, further aggravating plant N limitation.     

The relationship between the microbial activity of the autochthonous microorganisms of pristine and contaminated soils and their potential for the degradation of mineral oil hydrocarbons

The microbial activity of pristine and contaminated soils was investigated by measuring the following parameters: glucose induced respiration, dimethylsulphoxide reduction and the hydrolysis of fluorescein diacetate. The viable counts were determined by the plate count method. The ability of the autochthonous microorganisms of the investigated soils to degrade diesel fuel was determined in a closed system on the basis of the oxygen consumption and by direct measurements of the hydrocarbon concentrations. As expected, compost showed the highest microbial activity with regard to all three parameters, followed by the grassland and the arable soil samples which were also found to have high activity. However, soils that had been exposed to mineral oil for a long period of time showed significantly lower values. Microorganisms from contaminated sites had a high degradation potential; few pristine soils reached similar turnover rates. The investigations showed that the level of the degradation of diesel fuel in pristine soils correlated with their microbial activity, but this correlation was not found in the investigated contaminated soils.     

Effect of soil K, Ca and Mg saturation and endomycorrhization on growth and nutrient uptake of sugar maple seedlings

Nutrient imbalances of declining sugar maple (Acer saccharum Marsh.) stands in southeastern Quebec have been associated with high exchangeable Mg levels in soils relative to soil K and Ca. A greenhouse experiment was set up to test the hypothesis that the equilibrium between soil exchangeable K, Ca, and Mg ions influences the growth and nutrient status of sugar maple seedlings. Also tested was whether endomycorrhization can alter nutrient acquisition under various soil exchangeable basic cations ratios. Treatments consisted of seven ratios of soil exchangeable K, Ca, and Mg making up a total base saturation of 58%, and a soil inoculation treatment with the endomycorrhizal fungus Glomus versiforme (control and inoculated), in a complete factorial design. Sugar maple seedlings were grown for 3 months in the treated soils. Plant shoot elongation rate, dry biomass and nutrient concentrations in foliage were influenced by the various ratios of soil cations. The predicted plant biomass and foliar K concentration were highest at a soil Ca saturation of 38%, a soil K saturation of 12%, and a soil Mg saturation of 8%. Potassium concentration in foliage was dependent on the level of Ca and Mg saturation in the soil when soil K saturation was close to 12%. Foliar Ca and Mg levels were more dependent on their corresponding levels in soil than foliar K. Colonization by G. versiforme did not influence seedling growth and macronutrient uptake. The results confirm that growth and nutrition of sugar maple are negatively affected by imbalances in exchangeable basic cations in soils.     

Water Content Mediated Microaerophilic Toluene Biodegradation in Arid Vadose Zone Materials

We investigated the conditions promoting toluene biodegradation for gasoline-contaminated near-surface (0.6 m depth) and subsurface (4.7 to 5.0 m depth) vadose zone soils sampled from an arid environment. At both depths, water addition was required for toluene biodegradation to occur. In near-surface samples, no inorganic nutrient addition was necessary and (i) biodegradation was fastest at 0.0 MPa, (ii) biodegradation rates decreased with decreasing water potential down to ?1.0 MPa, and (iii) biodegradation was undetectable at ?1.5 MPa. For subsurface material, toluene depletion was stimulated either by slurrying with a nutrient solution or by adjusting the moisture content to 20% (0.0 MPa) with nutrient solution and lowering the oxygen concentration (to effectively 1 mg L-1 in the aqueous phase). Thus, in the subsurface material, toluene depletion was microaerobic and nutrient-limited, occurring only under low oxygen and with inorganic nutrient addition. Our studies implicate microaerophily as an important characteristic of the toluene-degrading communities in these dry soils, with soil water as a primary controller of oxygen availability.     

Effects of phenolic acids on ammonia oxidation by terrestrial autotrophic nitrifying microorganisms

Abstract It has been hypothesized that vegetation in certain ecosystems inhibits nitrification in soil by producing phenolic compounds that inhibit oxidation of ammonia by nitrifying microorganisms. This hypothesis is based largely on a report that very low concentrations (10⁻⁶ M–10⁻⁸ M) of several phenolic acids (notably ferulic acid) completely inhibited NO₂⁻ production in an aqueous suspension of soil treated with (NH₄)₂SO₄ and a nutrient solution suitable for growth of Nitrosomonas and other autotrophic nitrifying microorganisms. To evaluate this hypothesis, we determined the effects of three ohenolic acids (ferulic acid, caffeic acid, and p -coumaric on nitrite production by representatives of three genera of terrestrial autotrophic nitrifying microorganisms ( Nitrosospira, Nitrosomonas , or Nitrosolubos ) grown on a defined medium containing NH₄⁺. We found that nitrite production by the Nitrososspira was not inhibited by ferulic acid, caffeic acid, or p -coumaric acid at concentrations of 10⁻⁶ or 10⁻⁵ M and was only slightly inhibited when these acids were at a concentration of 10⁻⁴ M. We also found that ferulic acid did not markedly inhibit nitrite production by the three genera of nitrifying microorganisms studied, even when its concentration was as high as 10⁻³ M. These observations invalidate the hypothesis tested because the phenolic acids studied did not significantly retard ammonia oxidation by autotrophic microorganisms even when their concentration in cultures of these microorganisms greatly exceeded their concentrations in soils.     

Microbial Growth in a Steady-State Model of Ethylene Glycol-Contaminated Soil

Biodegradation of ethylene glycol was tested in a laboratory-scale, steady-state infiltration system of two arid region soil types by monitoring indigenous microbial growth after the infiltration of three concentrations of ethylene glycol. Microorganisms in the soils were able to adapt to the ethylene glycol in several cases, resulting in higher numbers of microorganisms and lower pHs in the effluents. These microorganisms were identified and were able to use ethylene glycol as a sole carbon source. The adaptation was seen best with high-moisture-content soils when the ethylene glycol concentrations were 1% or 10%. However, acclimation to 0.1% and 10% ethylene glycol did not occur in low-moisture-content clay soil, but did occur in low-moisture-content silt soil, indicating that soil type and moisture content are important factors. In all cases, microbial diversity decreased over time. Received: 23 June 1997 / Accepted: 11 August 1997     

Do nutrient-poor soils inhibit development of forests? A nutrient stock analysis

Nutrient-poor soils often support low-stature grasslands, savannas and shrublands where the climate is warm enough and wet enough for closed forests. Though this pattern has long been recognised, the causes are debated and poorly explored. I tested the hypothesis that forest fails to develop where the total nutrient pool is too small to construct both the foliage and the wood. I estimated potential woody biomass from the difference between soil nutrient stocks and forest foliage stocks. Nutrient stocks required for foliage were estimated from leaf tissue concentrations and foliage biomass typical of Amazon forests. Potential wood biomass was estimated from wood nutrient concentrations typical of Amazon forests. Data on soil nutrient stocks were assembled from studies from South American and African forests and savannas and from south-western Australian and south-west African heathlands. According to these calculations, estimated nutrient stocks (kg ha^?1) to build a forest would need to be > = P: 20–30, K 200–350, Ca 300–600 and Mg 55–65. Many surface soil horizons from both savanna and heathland sites were below these thresholds. However when deeper soil layers were included, most soils had adequate nutrient stocks. The nutrients in shortest supply were Ca and K and not P. This study suggests that nutrient stocks are usually adequate for constructing the wood needed to build a forest, except where soils are highly leached and very shallow. The implication is that, at steady state, low nutrient stocks seldom constrain forest development. The apparent failure of low nutrient stocks to explain the missing forests on nutrient-poor soils emphasises the need for new ideas on how nutrients, alone or in combination with other factors such as fire, influence vegetation structure.