Regional chronologies of <Emphasis Type="Italic">Cedrela</Emphasis><Emphasis Type="Italic">fissilis</Emphasis> and <Emphasis Type="Italic">Cedrela angustifolia</Emphasis> in three forest types and their relation to climate

Key message

Although tree-ring chronologies of Cedrela fissilis and Cedrela angustifolia showed a common climatic signal, local conditions influence growth, suggesting that forest guidelines should be appropriate to the species and context.

Abstract

Cedrela species are highly valued because of the quality of their timber. Understanding the behaviour of each different Cedrela species and their ecology is of importance to ensuring that forest harvesting and management do not endanger the survival of natural populations. These species grow in a wide range of environmental gradients and different types of forests in Bolivia. This study used dendrochronological methods to analyse growth–precipitation relationships of two Cedrela species coming from three locations with different environmental conditions: dry Chiquitano (Concepción), Chiquitano transitional Amazonian (Guarayos), and Bolivian-Tucuman montane forests (Postrervalle). The rainy season in all locations runs from October to April and the dry season runs from May to September. Twelve Cedrela fissilis specimens were sampled from dry Chiquitano, 11 Cedrela fissilis specimens from Chiquitano transitional Amazonian, and 30 Cedrela angustifolia specimens from Bolivian-Tucuman montane forests. The samples were crossdated and exhibited a common signal between trees from three sites, despite tree rings from the Chiquitano transitional Amazonian forest being narrower and displaying blurred bands of parenchyma in the boundaries. Significant inter-series correlation was found for the C. fissilis species series from dry Chiquitano with r = 0.261 (p < 0.01) and Chiquitano transitional Amazonian forests with r = 0.284 (p < 0.01), and for Cedrela angustifolia from Bolivian-Tucuman montane forests with r = 0.374 (p < 0.01). Mean annual growth was 2.07, 1.92, and 2.82 mm year^?1 at the three sites, respectively. Cedrela species from dry Chiquitano and Bolivian-Tucuman montane forests were sensitive to precipitation from October to April of the current growth year (wettest season) and to low temperatures from May to July of the current growth year (driest season). Samples from Chiquitano transitional Amazonian were more sensitive to precipitation during late rainy season (March, April, and May of the current growth year) and high temperatures during the rainy months (November–December). Growth differences between sites and species in response to climate variations and local conditions should be taken into account and handled with different forest management guidelines.

     

Elements for a non-detriment finding of Cedrela spp. in Bolivia—A CITES implementation case study

Cedrela odorata and C. fissilis are two tropical tree species that have been widely harvested for their timber. In response to this heavy exploitation, the species have been listed in Appendix III of the Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES). The aim of this study was to provide important elements necessary for the making of CITES Non-Detriment Findings for Cedrela spp. in Bolivia using a wide variety of sources of information on its distribution, population structure, and management at multiple spatial scales. A national large-scale database of forest inventories was created, including information about trees of certain species with diameter at breast height (dbh) ≥20. These data were used to make non-detriment findings (NDFs) following CITES guidance for timber species. Spatial prediction of Cedrela habitat revealed a consistent pattern of habitat probability across Bolivia. The genus occurs in areas formerly or currently occupied by ten of the twelve forest types described as habitat for Cedrela odorata and C. fissilis, with a density ranging from 0.4 to 159 trees > 60 cm dbh per 100 ha. Based on these data, the annual export quota for Cedrela in Bolivia should be 3513.1 m³ of timber. This country-level case study could provide a roadmap for other studies that may eventually lead to uplisting the genus. Including Cedrela in CITES Appendix II may help to ensure that its harvest to supply international markets is conducted in a sustainable manner, without damaging the target species or their ecosystem.     

Growth ring response of two Atlantic Forest tree species pre- and post-dam operation in Southern Brazil

Hydropower plants are important sources of renewable energy, but the climatic impacts of their constructions remain poorly explored. Considering that tree growth analysis is a useful tool to identify environmental impacts, this study aimed at using climate records and tree-ring chronologies to understand possible local climate changes caused by the construction of a hydropower plant in the 1980s in the State of Paraná, Southern Brazil. Historical climatic data were obtained from the local meteorological station and surrounding municipalities and analyzed using ANOVA and means tests. The Pettitt test was additionally used to identify change-points in the meteorological data. Wood samples from a total of 60 trees from Araucaria angustifolia (Bertol.) Kuntze (Araucariaceae) and Cedrela fissilis Vell. (Meliaceae) were collected, and tree-ring chronologies were built using dendrochronological standard procedures. Chronologies for A. angustifolia and C. fissilis represented time periods from 1800 to 2016 and 1899–2015, respectively. Tree-ring growth responses to climatic variables were evaluated by adjusting generalized mixed linear models and the Spearman correlations. Our results evidenced that the hydropower plant altered the local climate, mostly influencing the hydrological cycle by increasing local rainfall, with monthly rain volumes being statistically higher than in other meteorological stations. Significant responses in the growth of A. angustifolia were found to be associated with the water level increase caused by the dam and of C. fissilis due to the increase in cloud cover.     

An assessment of the genetic diversity of Cedrela balansae C. DC. (Meliaceae) in Northwestern Argentina by means of combined use of SSR and AFLP molecular markers

Cedrela balansae C.DC. is a native tree species in Argentina, severely exploited for its timber features. We performed a molecular analysis to understand the genetic diversity and its distribution in eight remaining populations, which are distributed within the species' range in the Argentine Yungas Rainforest. We used two molecular markers: (i) seven SSRs, selected from forty-five SSRs developed for phylogenetically close species belonging to the Meliaceae family and (ii) 382 polymorphic AFLPs. The He was 0.643 and 0.222 for SSRs and AFLPs, respectively. The moderate levels of genetic diversity were related to the limited size of the species' distribution area, the latitudinal position of populations, the impacts of logging and the species' spatial distribution pattern. Genetic differentiation among populations was low for both markers (4.9% and 4.1% for SSRs and AFLPs, respectively). Four genetic clusters homogeneously distributed were distinguished. These observations may relate to the considerable historical gene flow measured (3.71 and 4.47 for SSRs and AFLPs, respectively). To safeguard the currently existing genetic base in the species, we identify four priority populations for conservation. To date only one of these is located in a protected area. Therefore, it is urgent to apply additional conservation measures for the remaining populations.     

Dendroecological investigations on Swietenia macrophylla King and Cedrela odorata L. (Meliaceae) in the central Amazon

The width of the increment zones in the xylem of Swietenia macrophylla King and Cedrela odorata L. was investigated by dendroecological methods in a primary forest near Aripuanã, Mato Grosso, Brazil (10°09′S, 59°26′W). The annual period of cambial cell division and its intra-annual variation were determined by dendrometer measurements of 30 trees of each species. Tree-ring width chronologies for Swietenia and Cedrela were developed from cross-dated increment curves of 33 out of 47 Swietenia and 51 out of 64 Cedrela trees. Simple correlations were computed between the radial growth increment and monthly precipitation for the period 1890–2000. In Swietenia, cambium activity occurred throughout almost the whole year, but in Cedrela it was restricted to the rainy period from September of the previous year to June of the current year. Tree-rings were formed annually in the juvenile and adult wood of Cedrela, while in Swietenia the annual formation of tree-rings was restricted to the adult wood. Consequently the age of the Swietenia trees could be dated by the tree-rings in good approximation, while age dating of the Cedrela trees was exact. Correlation analyses revealed a significant relationship between the precipitation at the beginning and at the end of the growth season and the width of the increment zones in the adult xylem of Swietenia. In contrast, the width of the growth increment in the xylem of Cedrela was significantly correlated with the precipitation in March and May of the previous growth period.     

Regulation of xylem sap flow in an evergreen, a semi-deciduous, and a deciduous Meliaceae species from the Amazon

The significance of phenological characteristics, stomatal conductance of the leaves, and stem water storage fluctuations for the regulation of xylem sap flow in an evergreen (Carapa guianensis Aubl.), in a semi-deciduous (Swietenia macrophylla King), and in a deciduous (Cedrela odorata L.) Meliaceae species was studied in a 7-year-old plantation near Manaus, Brazil. The study responds to the increasing demand for knowledge on the water relations of highly exploited timber trees of the Amazon. Xylem sap flow measurements indicated that the daily sap flow of Carapa (3.8 l day^-1 tree^-1 to 16.4 l day^-1 tree^-1) exceeded the daily sap flow of Swietenia (2.4 l day^-1 tree^-1 to 7.0 l day^-1 tree^-1) and Cedrela (1.6 l day^-1 tree^-1 to 11.6 l day^-1 tree^-1) during the entire year, although the highest flux densities were measured in Cedrela. The decrease in xylem sap flow observed in periods with low soil water potentials and high atmospheric vapor saturation deficits was more pronounced in the deciduous (Cedrela) and semi-deciduous species (Swietenia) than the evergreen species (Carapa). Carapa, which has the highest daily sap flow, had the highest biomass and sapwood portion. The high flux densities measured in Cedrela most likely result from the large earlywood vessels in this species. The seasonal variation of xylem sap flow of the three species was correlated with the stomatal conductance of the leaves measured by infiltration experiments. Stem water storage fluctuations in Carapa and Swietenia were predominantly due to transpiration; in Cedrela it was predominantly due to evaporative water loss on the stem surface during dry periods.     

In vitro shiro formation between the ectomycorrhizal basidiomycete Tricholoma matsutake and Cedrela herrerae in the Mahogany family (Meliaceae)

Tricholoma matsutake is an ectomycorrhizal basidiomycete that associates with Pinaceae plants, forming a rhizospheric mycelial aggregate called “shiro” from which the prized “matsutake” mushrooms form. Here we document that T. matsutake associates in vitro with Andean Cedrela herrerae (Meliaceae) via root endophyte interactions and efficiently forms shiro. C. herrerae produces many branches, leaves, and lateral roots in association with T. matsutake, unlike C. odorata, which grows in the tropics and produces few leaves and branches in association with the symbiont. This symbiosis may be a unique approach to culturing matsutake as well as to cultivating endangered plant species in vitro.     

Genetic diversity of Cedrela fissilis (Meliaceae) in the Brazilian Atlantic Forest reveals a complex phylogeographic history driven by Quaternary climatic fluctuations

Quaternary climatic fluctuations have shaped the geographic distribution of lineages, potentially affecting the demography, genetic structure, and patterns of genetic diversity of extant species. Different phylogeographic scenarios have been proposed for plants in neotropical cloud forests during the Last Glacial Maximum based on paleoecological data: the dry refugia hypothesis (DRH) and the moist forest hypothesis. We specifically focus on the Brazilian Atlantic Forest (BAF) range of Cedrela fissilis (Meliaceae), sampling 410 specimens from 50 localities. Our study combines analyses of the genetic diversity, phylogeographic patterns, and past geographic distributions with a particular focus on highland populations. We identified 283 alleles across the 11 microsatellite loci, ranging from 18 to 33 alleles per locus, distributed across five genetic groups. Most populations of C. fissilis from the BAF exhibited a diffuse genetic structure, reflected in low pairwise F_ST values, which could be the consequence of high gene flow. In addition, the plastid data showed a connection between the western, southern, and eastern populations in the North‐East of Brazil, but no association between genetic data and elevation was observed. Habitat suitability projections over the past 140 000 years showed less fragmentation relative to the present, indicating a higher connectivity and gene flow. Our results provide support for both the moist forest as well as the DRH, suggesting that most likely, a mixture of these processes has acted through space and time.     

Foliar pathogens of Populus angustifolia are consistent with a hypothesis of Beringian migration into North America

Populus angustifolia, the narrowleaf cottonwood, is considered one of two native species of Populus section Tacamahaca restricted to western North America. Efforts to construct a definitive phylogeny of Populus spp. are complicated by ancient hybridization, but some phylogenetic analyses suggest P. angustifolia is more closely related to Asian congeners than to Populus trichocarpa, the other species of Populus section Tacamahaca in western North America. Because hosts and their obligate symbionts can display parallel phylogeographic patterns, we evaluated the possibility of a Beringian migration into North America by an Asian ancestor of P. angustifolia by determining the distributions, host preferences, and, in some cases, closest phylogenetic relatives of fungal leaf pathogens of P. angustifolia. Phyllactinia populi, a common foliar pathogen on Populus spp. in Asia but unknown on P. trichocarpa, was found on P. angustifolia in multiple sites. Mycosphaerella angustifoliorum, also unknown on P. trichocarpa, was commonly collected on P. angustifolia. Conversely, many common foliar pathogens of P. trichocarpa in western North America were not found on P. angustifolia; only Melampsora×columbiana and Drepanopeziza populi were common to both Populus species. Phylogenetic analyses revealed that M. angustifoliorum was not part of the diversification of Mycosphaerella on Populus that includes all other Mycosphaerella species on Populus in North America: Mycosphaerella populicola, Mycosphaerella populorum, M. sp. 1, and M. sp. 2. The latter two undescribed species represent a newly discovered diversification of M. populorum in western North America. Overall, the leaf pathogen community of P. angustifolia is consistent with a Beringian migration into North America by the ancestor of P. angustifolia.     

Genetic relationship and genetic diversity among Typha taxa from East Asia based on AFLP markers

The genetic relationship and diversity among four Typha taxa in East Asia were evaluated using amplified fragment length polymorphism (AFLP) markers. Three AFLP selective primer combinations generated a total of 707 amplification products, of which 704 (99.6%) were polymorphic. The unweighted pair-group method with arithmetic mean (UPGMA) dendrogram and principal component analysis (PCA) plot confirmed the taxonomic status of four separate species. East Asian Typha taxa separated into two groups: the first with Typha angustifolia and the second with T. orientalis, T. laxmanni, and T. latifolia with a high bootstrap value for UPGMA (93%) and a low first score for PCA (25%). The two clusters corresponded with two sections based on the bracteoles in the female flower: section Bracteolatae and section Ebracteolatae. T. angustifolia showed the highest genetic diversity among the four Typha taxa (percentage of polymorphic loci [PPL] = 71%, H_o = 0.157), whereas T. latifolia had the lowest genetic diversity (PPL = 40%, H_o = 0.117). Genetic diversity was related to the presence of the gap between male and female inflorescences. A positive correlation between genetic distance and geographic distance was clearly found in the two species with continuous inflorescences (T. latifolia and T. orientalis). This positive correlation was not observed in the other species with discontinuous spikes (T. angustifolia and T. laxmanni).     

In vitro conservation of Cedrela fissilis Vellozo (Meliaceae),a native tree of the Brazilian Atlantic Forest

Two in vitro conservation methods have beendeveloped for the ex situ conservation of germplasm fromCedrela fissilis, an economically important tree of theBrazilian Atlantic Forest. The first method involves the medium-term storage, at 25°C, of artificial seeds comprising alginate encapsulatedvegetative propagules (shoot tips, cotyledonary and epicotyl nodal segments).Maximum post-storage (3 months) viabilities of 96–100% wereachieved for encapsulated shoot tips and cotyledonary nodal segments stored onwater-solidified agar (at 0.4–0.7% w/v). Encapsulated shoot tips storedfor 6 months on 0.4% (w/v) agar showed the highest survival rates(44%). Seeds of C. fissilis were successfully cryopreserved(100%) after direct immersion in liquid nitrogen. Ex situstorage procedures are now available for the medium- to long-term conservationof C. fissilis. These approaches offer new opportunitiesfor the conservation, sustainable management and utilization of this valuablefast growing timber tree.     

Population genetics of <Emphasis Type="Italic">Cedrela fissilis</Emphasis> (Meliaceae) from an ecotone in central Brazil

Cedrela fissilis is an endangered timber species associated with seasonal forests throughout South America. We investigated a population of C. fissilis (PAN) located toward central Brazil to uncover insights on how an ecotone may have shaped the evolutionary history of this species at the local scale. PAN consisted of 18 mother trees and their 283 offspring (18 families), which were genotyped with ten microsatellite loci. We supplemented our dataset with equivalent microsatellite data from 175 specimens representing the east and west lineages of C. fissilis. An array of complementary methods assessed PAN for genetic diversity, population structure, and mating system. In PAN, the gene pool of the east lineage combined with a third (previously unidentified) lineage to form an admixture population. PAN is under inbreeding (Ho?=?0.80 and 0.74, uHe?=?0.85 and 0.82, Ap?=?1.1 and 7.1, F?=?0.06 and 0.10, for mother trees and offspring, respectively). Mother trees were predominantly outcrossing (t_m?=?0.95), with some selfing (1???t_m?=?0.05), and crossing between related individuals (t_m–t_s?=?0.07); they received pollen from few donors (N_ep?=?9). Restricted gene flow within PAN gave rise to a strong population structure, which split the 18 families into six groups. Some mother trees were reproductively isolated. Conservation perspectives are discussed.     

Authentication of the medicinal plant Sennaangustifolia by RAPD profiling

In this study “RAPD” molecular marker was employed for the identification of Sennaangustifolia, Sennaacutifolia, Sennatora and Sennasophera. Total 32 decamer primers were screened in amplification with genomic DNA extracted from all species, of which 6 primers yielded species-specific reproducible bands. Out of 42 loci detected, the polymorphic, monomorphic and unique loci were 24, 2 and 16, respectively. Based on dendrogram and similarity matrix, 4 species were differentiated from each other and showed more divergence. Thus, this technique may prove and to contribute the identification of these species of Senna having similar morphology sold in the local markets.     

Trace elements distribution in tropical tree rings through high-resolution imaging using LA-ICP-MS analysis

BackgroundThe distribution of trace elements in tree rings although poorly known may be useful to better understand environmental changes, pollution trends, long-term droughts, forest dieback processes, and biology of trees.MethodLaser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) is used for imaging micronutrients and potentially toxic elements distribution, allowing the investigation of trace elements at high spatial resolution within the tree rings. To ensure a more efficient determination of micronutrients and potentially toxic elements, LA-ICP-MS instrumental conditions were optimized and carbon, a major element in wood, is used as an internal standard during analysis to correct for random fluctuations.ResultsSpatial distributions maps of Ba, Cu, Fe, Mn, Ni, and Pb in growth layers of six tropical tree species were built-up using the LA-iMageS software, namely: Amburana cearensis (Fabaceae), Cedrela fissilis (Meliaceae), Hymenaea courbaril (Fabaceae), Maclura tinctoria (Moraceae), Parapiptadenia zehntneri (Fabaceae), Peltogyne paniculata (Fabaceae). A correlation between the trace element composition and different cell types (parenchyma, fiber, and vessel) was distinctly observed. It was observed a general pattern of Ba, Cu, Ni, Mn, and Pb accumulation mainly in the axial parenchyma and vessels. But the elemental composition of xylem cells is strongly species dependent. The multivariate analysis also points to a distinct accumulation of minerals between heartwood and sapwood in the same species.ConclusionsImaging both essential and deleterious element distributions in the tree rings may improve visualization and can effectively contribute to understanding the lifetime metabolism of trees and evaluating the effects of environmental changes related to climatic seasonality, pollution, and future paleoclimate reconstructions.     

Genic Microsatellite Markers in Brassica rapa: Development, Characterization, Mapping, and Their Utility in Other Cultivated and Wild Brassica Relatives

Genic microsatellite markers, also known as functional markers, are preferred over anonymous markers as they reveal the variation in transcribed genes among individuals. In this study, we developed a total of 707 expressed sequence tag-derived simple sequence repeat markers (EST-SSRs) and used for development of a high-density integrated map using four individual mapping populations of B. rapa. This map contains a total of 1426 markers, consisting of 306 EST-SSRs, 153 intron polymorphic markers, 395 bacterial artificial chromosome-derived SSRs (BAC-SSRs), and 572 public SSRs and other markers covering a total distance of 1245.9 cM of the B. rapa genome. Analysis of allelic diversity in 24 B. rapa germplasm using 234 mapped EST-SSR markers showed amplification of 2 alleles by majority of EST-SSRs, although amplification of alleles ranging from 2 to 8 was found. Transferability analysis of 167 EST-SSRs in 35 species belonging to cultivated and wild brassica relatives showed 42.51% (Sysimprium leteum) to 100% (B. carinata, B. juncea, and B. napus) amplification. Our newly developed EST-SSRs and high-density linkage map based on highly transferable genic markers would facilitate the molecular mapping of quantitative trait loci and the positional cloning of specific genes, in addition to marker-assisted selection and comparative genomic studies of B. rapa with other related species.     

Development and Application of Microsatellites in Candidate Genes Related to Wood Properties in the Chinese White Poplar (Populus tomentosa Carr.)

Gene-derived simple sequence repeats (genic SSRs), also known as functional markers, are often preferred over random genomic markers because they represent variation in gene coding and/or regulatory regions. We characterized 544 genic SSR loci derived from 138 candidate genes involved in wood formation, distributed throughout the genome of Populus tomentosa, a key ecological and cultivated wood production species. Of these SSRs, three-quarters were located in the promoter or intron regions, and dinucleotide (59.7%) and trinucleotide repeat motifs (26.5%) predominated. By screening 15 wild P. tomentosa ecotypes, we identified 188 polymorphic genic SSRs with 861 alleles, 2–7 alleles for each marker. Transferability analysis of 30 random genic SSRs, testing whether these SSRs work in 26 genotypes of five genus Populus sections (outgroup, Salix matsudana), showed that 72% of the SSRs could be amplified in Turanga and 100% could be amplified in Leuce. Based on genotyping of these 26 genotypes, a neighbour-joining analysis showed the expected six phylogenetic groupings. In silico analysis of SSR variation in 220 sequences that are homologous between P. tomentosa and Populus trichocarpa suggested that genic SSR variations between relatives were predominantly affected by repeat motif variations or flanking sequence mutations. Inheritance tests and single-marker associations demonstrated the power of genic SSRs in family-based linkage mapping and candidate gene-based association studies, as well as marker-assisted selection and comparative genomic studies of P. tomentosa and related species.