Optimising sampling methods for small mammal communities in Neotropical rainforests

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Species richness and rarity of crane flies (Diptera, Tipuloidea) in a boreal mire

Species richness and abundance are central in biodiversity inventories and in measuring the structure of communities. Neglecting the assessment of sampling efficiency may lead to spurious estimates of species richness and conservation value. Our aim was to examine species richness, sampling effectiveness, species-abundance distribution (SAD) and rarity of a boreal, mire-dwelling crane fly (Diptera, Tipuloidea) assemblage in western Finland. 12 Malaise traps dispersed in 4 subplots and standardized sweep net samples were used to collect adult flies from the mire. A total of 23 species and 1,569 specimens were identified. In general all species richness estimators were highly correlated and indicated rather good sampling effort. Sample completeness, expressed as percentage of observed richness divided by estimated richness, was higher for mire-dwellers (mean 75 %) than for all species (mean 63 %). Crane fly assemblages of subplots and combined data fitted best with log-series SAD. Species spatial distribution was positively correlated with average abundance. In other words, the most abundant species occurred in the most of Malaise traps. Seven mire-dwelling species greatly outnumbered (94 % of the collected specimens) all other members in the assemblage, and only one observed species was rare by several definitions (local abundance, extent of occurrence in Finland and area of occupancy). Although the studied assemblage was characterized by commonness, five of the species have threatened status in Europe south of Finland. Separate species richness estimation of all species (vagrants and occasional species included) and focal species (here mire-dwellers) is supported if ecological information is available on the taxonomic group being studied.     

An initial assessment of sampling procedures for juvenile pallid sturgeon in the Missouri River downstream of Fort Randall Dam, South Dakota and Nebraska

We compared the effectiveness of passive gill nets, hoop nets, set lines, and drifted trammel nets, towed beam trawls and otter trawls to develop criteria to best determine the mean catch per unit effort (CPUE) for juvenile pallid sturgeon (Scaphirhynchus albus) based on selectivity and seasonal efficiency in various habitats of the Missouri River downstream of Fort Randall Dam, South Dakota. Sampling occurred from April to November in 2003 and 2004 and from March to November in 2005. We captured 29 juvenile pallid sturgeon in a total of 498 overnight gill net sets, 55 in 870 drifted trammel nets, 19 on 1683 set lines, and six in 166 otter trawl tows. No pallid sturgeon were captured in 515 beam trawl tows or 520 overnight hoop net sets. Seasonal trends in mean CPUE were found and the relative precision was the greatest in October and November for gill nets, in August for trammel nets, in April for set lines, and in October for otter trawls. A higher proportion of pallid sturgeon captures for gill nets were in the inside bend macrohabitat generally associated with lower water velocities, trammel nets over sand substrate and in the outside bend macrohabitat typically associated with higher water velocities and greater depths, set lines in lower water velocities, and otter trawls in depths >2.5 m and over sand substrate. Although we found trends among seasons and habitats for gill nets, trammel nets, set lines, and otter trawls, the catch rates were low and annual point estimates of relative abundance are not adequate to detect changes in relative abundance of juvenile pallid sturgeon in this reach of the Missouri River. Independently, gill nets, trammel nets, and otter trawls likely captured the size structure of the population of pallid sturgeon in the Missouri River downstream of Fort Randall Dam. Based on our results, a standardized protocol can now be established to systematically monitor juvenile pallid sturgeon, an essential element for determining responses to recovery efforts in the Missouri River.     

Is pitfall trapping a valuable sampling method for grassland Orthoptera?

Common methods to assess diversity and abundance of Orthoptera are sweep netting, transect counts and box-quadrat sampling. Pitfall trapping, by contrast, is rarely used, and the value of this method is still being questioned. In 2008, we studied Orthoptera species richness and abundance in five vegetation types along a gradient of dune succession on the Baltic Sea island of Hiddensee (NE Germany) by comparing transect-count and pitfall-trapping data. Using transect counts, 12 species were detected in the study area. With pitfall traps, three chorto- and thamnobiont Ensifera species (C. dorsalis, M. roeselii and T. viridissima) were not caught at all, and it was only in low-growing and sparsely-vegetated grey dunes that all present species were detected. With pitfall traps, the proportion of present species recorded strongly declined with increasing height and density of the vegetation type. Assuming that transect counts are a good proxy for relative Orthoptera densities, densities ascertained by pitfall traps are strongly biased by vegetation structure and locomotive behaviour of the species. More than 80% of all individuals were caught in sparsely-vegetated grey dunes. Frequency patterns of the species also differed. Using pitfall traps, especially chortobiont species were significantly underrepresented. Qualitative and quantitative sampling of Orthoptera using pitfall traps seems only reasonable in habitats with low and sparse vegetation and a high proportion of geobiont species.     

Using data from an encounter sampler to model fish dispersal

A method to estimate speed of free-ranging fishes using a passive sampling device is described and illustrated with data from the Everglades, U.S.A. Catch per unit effort (CPUE) from minnow traps embedded in drift fences was treated as an encounter rate and used to estimate speed, when combined with an independent estimate of density obtained by use of throw traps that enclose 1 m(2) of marsh habitat. Underwater video was used to evaluate capture efficiency and species-specific bias of minnow traps and two sampling studies were used to estimate trap saturation and diel-movement patterns; these results were used to optimize sampling and derive correction factors to adjust species-specific encounter rates for bias and capture efficiency. Sailfin mollies Poecilia latipinna displayed a high frequency of escape from traps, whereas eastern mosquitofish Gambusia holbrooki were most likely to avoid a trap once they encountered it; dollar sunfish Lepomis marginatus were least likely to avoid the trap once they encountered it or to escape once they were captured. Length of sampling and time of day affected CPUE; fishes generally had a very low retention rate over a 24 h sample time and only the Everglades pygmy sunfish Elassoma evergladei were commonly captured at night. Dispersal speed of fishes in the Florida Everglades, U.S.A., was shown to vary seasonally and among species, ranging from 0· 05 to 0· 15 m s(-1) for small poeciliids and fundulids to 0· 1 to 1· 8 m s(-1) for L. marginatus. Speed was generally highest late in the wet season and lowest in the dry season, possibly tied to dispersal behaviours linked to finding and remaining in dry-season refuges. These speed estimates can be used to estimate the diffusive movement rate, which is commonly employed in spatial ecological models.     

Fish sampling in the marine-dominated Kariega Estuary,South Africa,using a demersal otter trawl: day/night effects

Very few demersal fish assemblage studies using otter trawls in estuaries have been done in South Africa and none of these have tested for the effects of diel period. This study aimed to test whether diel period affects otter trawl catches in the clear, permanently open Kariega Estuary in terms of both species composition and abundance. Fish were sampled by day and night from 30 October to 1 November 2007 at 15 sites using an otter trawl. More species were collected at night, when there were higher catch rates for all key species, with the exception of Rhabdosargus holubi, which was more abundant during the day. Overall assemblages collected by day and by night were similar, with six species accounting for over 90% of the catch in both day and night samples. Both day and night samples reflected differences related to region, with the highest mean CPUE during day and night sampling being recorded in the head region.     

The spring development of phytoplankton in Lake Erken: species composition,biomass, primary production and nutrient conditions — a review

Relative abundance and within-lake distributions of three fishes, northern redbelly dace (Phoxinus eos), finescale dace (Phoxinus neogaeus), and central mudminnow (Umbra limi), were examined using minnow traps in Tuesday Lake, a small bog lake in the Upper Peninsula, Michigan. For these species, catches in minnow traps placed at the perimeter of the lake were 21 to 52 times higher than catches in midlake traps. Variance: mean ratios of perimeter trap catches indicated that both dace species were highly aggregated while the distribution of mudminnows was less aggregated or random. Over an 11 day period during which all fish caught were removed from the lake, catch per unit effort (CPUE) of both dace species declined in response to fish removal. In contrast, CPUE for mudminnows was low initially, increased to an asymptote and then declined only in the last 5 days of the fish removal. The patterns of CPUE for mudminnows indicated that mudminnow trapability and/or activity was reduced in the presence of high densities of dace. The low abundance of dace in traps with many mudminnows suggested mudminnows avoided traps already containing dace. Throughout the removal period, CPUE provided an accurate index of dace abundance, whereas this was true for mudmnnows only after dace populations had been reduced drastically. Therefore, in any use of minnow traps to estimate populations, both spatial distributions and relative species abundance of small fishes must be taken into account.     

Vertical and seasonal variation in the abundance and the species richness of Attelabidae and Cantharidae (Coleoptera) in a suburban mixed forest

A continuous sampling of canopy beetles was carried out to determine variation in the abundance and the species richness of the Attelabidae and Cantharidae in a suburban mixed forest. Changes in the abundance and the species richness were monitored in three vertical strata of the forest from May to November in 1999, using yellow and blue water pan traps. The results showed significant variation in the abundance and the species richness of Attelabidae and Cantharidae between the layers, trap colors and seasons. Rare species were found in the bottom and middle layers, but were absent in the upper layer. In contrast, common species were more abundant in the upper layer than in the lower layers. The yellow traps had better trapping efficiency than the blue traps for both families, with the exception of an attelabid species, Cycnotrachelus reolofsi, which was more abundant in the blue traps. The abundance and the species richness were generally greater in spring than in summer. In spring, the abundance was consistently highest in the yellow traps in the upper layer. Season and layer were determinant factors in the species composition of the Attelabidae, while only season explained variation in species composition of the Cantharidae.     

Ecological aspects of syllids (Annelida: Polychaeta: Syllidae) on Thalassia testudinum beds in Venezuela

The spatial and temporal variations of syllids associated with the tropical Thalassia testudinum were studied at four seagrass beds in the Morrocoy National Park. The epifaunal syllids were collected at quarterly intervals throughout one year using a modified suction sampler. Possible relationships between sampling sites, months and species were evaluated by Principal Components Analysis. The spatial-temporal variability of the predominant species was tested by means of a 2-factor ANOVA with the sampling sites and months as factors. A total of 1138 individual syllids were collected, belonging to 41 species and 12 genera, of which Branchiosyllis, Exogone, Odontosyllis, Sphaerosyllis and Syllis showed the highest diversity. Spatial variations were defined by the species of Branchiosyllis (B. exilis, B. lorenae, B. oculata) whereas temporal variability was defined by certain species of Syllis(S. beneliahui, S. broomensis and S. prolifera), the latter also being the most species rich genus present. Of the 41 species found, only these six showed consistent presence–absence and abundance patterns. Species richness and abundance were significantly higher in March at all sampling sites. Collectively, the syllid fauna of the Morrocoy seagrass beds was richer than recorded from other similar habitats. These findings are discussed in relation to the physical and biotic factors that may affect the variability of syllid populations in these seagrass habitats.     

Tailoring your bee sampling protocol: Comparing three methods reveals the best approaches to capturing bees

1. Bees are prolific, vital pollinators in agricultural and natural settings, but some taxa are declining. Surveying bees is crucial to understand the needs of these taxa; however, we lack a fine-grained understanding of assemblages associated with different sampling methods that would enable us to analyse data range-wide.
2. Here we examine the difference in abundance and richness of bees (bee bowls and vane traps only) and bumble bees (genus Bombus; bee bowls, blue vane traps and target netting) sampled with these methods from mixed-grass prairie to alpine habitats in Wyoming, USA.
3. We collected four times more bees and twice as many genera of bees in vane traps than bee bowls. Vane traps captured more individuals of abundant genera than bee bowls.
4. Bombus species abundance did not vary between vane traps and target netting; however, richness was higher in vane traps. Bee bowls captured few Bombus species.
5. Overall, we recommend using vane traps to sample most bees, and a combination of vane traps and target netting to collect bumble bees. We evaluated how three sampling techniques perform when surveying for wild bees, which will aid in identifying declining species as well as monitoring species of conservation concern.

     

Habitat patch and matrix effects on small-mammal persistence in Amazonian forest fragments

Tropical forest mammal assemblages are widely affected by the twin effects of habitat loss and habitat fragmentation. We evaluated the effects of forest patch metrics, habitat structure, age of patch isolation, and landscape metrics on the species richness, abundance and composition of small mammals at 23 forest fragments (ranging in size from 43 to 7,035 ha) in a highly deforested 3,609-km² landscape of southwestern Brazilian Amazonia. Using pitfall traps and both terrestrial and arboreal traplines of Sherman, Tomahawk and snap traps, we captured a total of 844 individuals over 34,900 trap-nights representing 26 species and 20 genera of small-mammals, including 13 rodent and 13 marsupial species. We also consider the effects of distance from forest edges on species occupancy and abundance. Overall small mammal abundance, species richness and species composition were primarily affected by the quality of the open-habitat matrix of cattle pastures, rather than by patch metrics such as fragment size. Ultimately, small mammal community structure was determined by a combination of both landscape- and patch-scale variables. Knowledge of the anthropogenic factors that govern small mammal community structure is of critical importance for managing the persistence of forest vertebrates in increasingly fragmented neotropical forest landscapes.     

Sampling technique affects detection of habitat factors influencing wild bee communities

Reliable and consistent monitoring is essential for bee conservation. Correctly interpreting the influence of habitat characteristics on native bee communities is necessary to develop effective strategies for bee conservation and to support the provision of pollination services to agricultural crops or natural plant communities. Biases imposed by different sampling methods used to monitor bee populations can affect our ability to discern important habitat characteristics, but the extent of this bias is not well understood. We used three common sampling methods (blue vane traps, colored pan traps, and aerial net collection) to assess bee communities in fragments of Palouse Prairie in eastern Washington and northern Idaho. We determined differences in abundance, species richness, proportional representation of different genera, and functional trait characteristics among the three sampling techniques. We also evaluated differences in the relationships between bee species richness and diversity and two key habitat variables known to mediate bee populations: local plant species richness and the amount of suitable bee habitat in the surrounding landscape. Community metrics for bees collected using blue vane traps were correlated with the amount of suitable habitat in the landscape but not with plant species richness. Conversely, community metrics for bees collected using an aerial net were correlated with the local plant species richness but not with the amount of suitable habitat. Our results indicate that effective conservation of insect communities will require a combination of sampling methods to reliably discern the influence of habitat variables at different scales and across taxa with varying functional traits.     

Biases in Trapping Larval Amphibians in Playa Wetlands

Abstract: Standardized, effective sampling methods are required to monitor amphibian population trends and community composition. Funnel traps have been used to ostensibly estimate species richness and relative abundance of larval amphibians. We tested whether funnel traps can be used to provide unbiased estimates of amphibian community composition in playa wetlands by comparing seining—dip netting and passive funnel-trapping results. Plains spadefoots (Spea bombifrons) were more prone to be captured in funnel traps whereas New Mexico spadefoots (S. multiplicata) were less likely captured by funnel traps than by seines and dip nets. In playas funnel traps should be used only for collecting specimens and not for estimating amphibian community composition.     

A comparison of pitfall traps with bait traps for studying leaf litter ant communities.

A comparison of pitfall traps with bait traps for sampling leaf litter ants was studied in oak-dominated mixed forests during 1995-1997. A total of 31,732 ants were collected from pitfall traps and 54,694 ants were collected from bait traps. They belonged to four subfamilies, 17 genera, and 32 species. Bait traps caught 29 species, whereas pitfall traps caught 31 species. Bait traps attracted one species not found in pitfall traps, but missed three of the species collected with pitfall traps. Collections from the two sampling methods showed differences in species richness, relative abundance, diversity, and species accumulation curves. Pitfall traps caught significantly more ant species per plot than did bait traps. The ant species diversity obtained from pitfall traps was higher than that from bait traps. Bait traps took a much longer time to complete an estimate of species richness than did pitfall traps. Little information was added to pitfall trapping results by the bait trapping method. The results suggested that the pitfall trapping method is superior to the bait trapping method for leaf litter ant studies. Species accumulation curves showed that sampling of 2,192+/-532 ants from six plots by pitfall traps provided a good estimation of ant species richness under the conditions of this study.     

Hoverfly (Diptera: Syrphidae) community of a cultivated arable field and the adjacent hedgerow near Debrecen,Hungary

A hoverfly (Syrphidae) community was investigated in a cultivated wheat field and the adjacent hedgerow near Debrecen (Hungary). We monitored the change of species richness and abundance of hoverflies along three transects in the hedgerow and in the wheat field in different distances (10 m, 20 m) from the hedgerow. The effect of sampling methods on the number of hoverfly species and individuals was analyzed. Two sampling methods were used to catch hoverflies: netting and pan traps. The whole sampling period was divided into three subperiods, which are early (22^nd April–2^nd June), middle (11^th June–1^st August) and late (6^th August–11^th September). Altogether 1,214 individuals of 22 species were sampled. Fourteen species with 78% of individuals belonged to the aphidophagous group, feeding on aphids as larvae. Altogether 861 individuals of 22 hoverfly species were sampled by netting and 353 individuals of 10 species by pan traps. The total number of hoverfly species was significant lower in the late period than in the early. The total abundance was higher in the middle period compared to the early. The species richness and abundance of aphidophagous species followed a similar pattern as the total species values. The species richness and abundance of hoverflies were significant higher in 10 m and 20 m distance in the wheat field than along the hedgerow. The results suggest that the pan traps were less efficient in the hedgerow than the netting, but in the wheat field they sampled more hoverflies because of visually alluring effect on hoverflies in the absence of flowers.     

Attractiveness of baits to dung beetles in Brazilian savanna and exotic pasturelands

The Brazilian savanna is the second largest ecosystem in Brazil. It is also one of the most endangered, with only 20% of its habitat remaining unchanged. Agriculture and livestock have been indicated as the main agents of destruction of the Brazilian savanna. Brazilian livestock, for example, is the main reason for cultivation of exotic grasses such as Urochloa spp. (from Africa). Dung beetles are widely used in ecological assessment, mainly because they are recognized as bioindicators of environmental changes. Therefore, efficient sampling is required for any research involving the biodiversity of this group. In order to mitigate the lack of information on efficiency of the attractiveness of baits in the endangered Brazilian savanna and in exotic pasturelands, we sampled dung beetles in four native patches of the Brazilian savanna and in four areas of pastures with Urochloa spp. Dung beetles were captured with pitfall traps baited with carcass, cattle dung, human feces and pig dung, with a total sampling effort of 384 traps. We sampled 7544 individuals belonging to 43 species and 18 genera of dung beetles. Thirty‐eight species were collected in the Brazilian savanna and 24 species in exotic pastureland. In both ecosystems traps baited with human feces sampled greater abundance and species richness of dung beetles when compared with the other three baits used. Our results showed that human feces is a reliable, easy and inexpensive bait to sample greater abundance and species richness of generalist dung beetles in both native and exotic habitats, with clear structural differences.     

Abundance and species richness as a function of food resources and vegetation structure: juvenile fish assemblages in rivers

Availability of food and habitat complexity are two factors generally invoked to explain the high density of fish in vegetated habitats. The role of food resources (zooplankton) and habitat complexity (expressed by a vegetation structural index) in determining juvenile fish abundance and fish species richness in three morphologically contrasted macrophyte types (Sagittaria, Ceratophyllum and Nuphar) was studied for a large, lowland river.
Our results showed that fish abundance increased with food availability, and was maximal for intermediate values of vegetation complexity. Food resources and vegetation complexity did not, however, explain the higher juvenile fish abundance observed in Sagittaria beds. We suggested that plant growth form, acting on fish foraging success and risk of predation, might influence patterns of juvenile fish distribution.
Species‐abundance relationships were similar among the three macrophyte types, but relationships between number of fish species (fish richness) and number of samples differed. Fish richness in terms of total number of fish species found at each sampling point showed the same pattern as for fish abundance: it increased with food availability and was highest at intermediate vegetation complexities. However, since both fish abundance and fish richness responded in the same manner to food availability and vegetation complexity, we were not able to distinguish statistically any effect for the specific fish richness formulated by the number of fish species per unit fish abundance. The current paradigm that structural complexity of vegetation provides a wider range of niches, increasing species diversity, was thus not verified. This finding indicates a simple species‐abundance relationship (the passive sampling hypothesis), and suggests that no special mechanism acts directly on fish species richness.     

Dispersal of adult caddisflies (Trichoptera) into forests alongside three New Zealand streams

The abundance and taxonomic richness of adult caddisfly faunas were determined at varing distances (up to 200 m) away from three North Island, New Zealand, streams to help define appropriate forested riparian zone widths for adult aquatic insects. Adults were collected using sticky traps and ultraviolet light traps on four occasions over summer. Light traps were more effective at catching caddisflies than sticky traps, but both methods gave similar patterns of declining abundance and taxonomic richness with distance from the stream edge. Abundances of total caddisflies at 20 m were <21% of those caught at the stream edge for both trapping techniques. The same trends were evident for abundances of most common species in light traps, whereas bimodal peaks were evident with distance from the channel edge for percentage females of three common species. More than 30% of species caught at the stream edge was found in light traps at least 70 m into forest at all sites. A faster rate of decline for abundance than richness with distance away from the stream reflected the relatively large distances travelled by representatives of many species. Similar results from the three sites for numbers and species richness indicate that the main area of activity for adult Trichoptera in forested riparian zones was within 30 m of the stream edge at these sites.     

Oyster Reef Restoration in the Northern Gulf of Mexico: Effect of Artificial Substrate and Age on Nekton and Benthic Macroinvertebrate Assemblage Use

In the northern Gulf of Mexico (GOM), reefs built by eastern oysters, Crassostrea virginica, provide critical habitat within shallow estuaries, and recent efforts have focused on restoring reefs to benefit nekton and benthic macroinvertebrates. We compared nekton and benthic macroinvertebrate assemblages at historic, newly created (<5 years) and old (>6 years) shell and rock substrate reefs. Using crab traps, gill‐nets, otter trawls, cast nets, and benthic macroinvertebrate collectors, 20 shallow reefs (<5 m) in the northern GOM were sampled throughout the summer of 2011. We compared nekton and benthic assemblage abundance, diversity and composition across reef types. Except for benthic macroinvertebrate abundance, which was significantly higher on old rock reefs as compared to historic reefs, all reefs were similar to historic reefs, suggesting created reefs provide similar support of nekton and benthic assemblages as historic reefs. To determine refuge value of oyster structure for benthic macroinvertebrates compared to bare bottom, we tested preferences of juvenile crabs across depth and refuge complexity in the presence and absence of adult blue crabs (Callinectes sapidus). Juveniles were more likely to use deep water with predators present only when provided oyster structure. Provision of structural material to support and sustain development of benthic and mobile reef communities may be the most important factor in determining reef value to these assemblages, with biophysical characteristics related to reef location influencing assemblage patterns in areas with structure; if so, appropriately locating created reefs is critical.