Signal behavior in cranes (the Siberian Crane Sarcogeranus leucogeranus, the White-naped Crane Grus vipio, and the Red-crowned Crane Grus japonensis) in the context of the ritualization hypothesis

Signal behavior of three crane species was chosen to test the logic of the ritualization hypothesis. Its claims to explain the origin and functioning of the “highly ritualized” communication signals in birds are discussed. It is shown that such signals are observed in a wide range of situations, including those in the absence of a social partner for communication (perceiver). In its presence a signal may be performed in a way that it cannot be perceived by the partner. The same actions (“ritualized preening”) vary in length and intensity, and such variability is present in nearly all situations. In each situation, it is difficult to discriminate between the ritualized preening and actual comfort behavior. It may take place even when a social partner is present. Short preening that may be readily considered as ritualized signals are more common in the all situations, including those with an absent partner. The endogenous cyclicity in unison calling by mates indicates that communication cannot be regarded as a simple exchange of signals in accordance to the ‘stimulus-reaction’ principle. Similar actions by the more ancestral Siberian Crane may appear to be more ritualized than in the evolutionary advanced Red-crowned Crane. All these findings contradict the concept of emancipation and ritualization of behavioral actions during evolution and selection for increasing communication efficiency. According to that hypothesis, during this process such actions, due to selection for more efficient communication, evolve into discrete meaningful communication signals (displays). They stand out against the background of the monotonous, unexpressive (non-signal) everyday behavior and thus appear as the main carriers of information serving principal communication functions. A more realistic approach seems to be the understanding of communication as a process of a continuous mutual fine-tuning of the social partners’ behavioral attitudes towards each other. In either participant, its behavior is an integral structure, inseparable into categories of more or less important signals (flow of behavior). Even minor changes in performance by one individual reflect alteration in its motivational state which, in its turn, changes that of the other participant and the subsequent lines of its behavior.     

Genetic diversity and relatedness in different generations of the Siberian crane (Grus leucogeranus Pallas) captive population

Eight variable microsatellite loci were analyzed in terms of studying the genetic structure of different generations of a captive population of a rare endemic Russian species, the Siberian crane (Grus leucogeranus Pallas). It was shown that the founding population of natural origin (15 birds) is characterized by high genetic diversity (N _A = 6.625, H _O = 0.767, H _E = 0.731) and a lack of relatedness (R = ?0.079). In the total sample of descendents of the founders (122 individuals from generations F₁, F₁/F₂, F₁/F₃, F₂, F₂/F₃), this characteristic level of genetic variation is being maintained; however, we observed a decrease in allelic richness in some generations (F₁/F₂, F₁/F₃, F₂). We found a low level of relatedness in the sample of descendents of the founders (F₁, F₁/F₂, F₁/F₃), while the relatedness was maximal (R = 0.302) in the descendents of the breeders of the first generation. A small sample of breeders related to each other of generations F₁ and F₂ (eight birds) does not represent the entire gene pool of the founders of the Siberian Crane captive population. In view of this, we discuss the need to form a new genetically heterogeneous generation of breeders that would also include Siberian Cranes from the almost extinct Western Siberian population.     

Genetic assessment of population restorations of the critically endangered Silene hifacensis in the Iberian Peninsula

In order to preserve endangered plant populations and recover their evolutionary potential and ecological behavior, some restoration measures generally involve the reinforcement of the population size in existing natural populations or the reintroduction of new populations. Genetic monitoring of both natural and restored populations can provide an assessment of restoration protocol success in establishing populations that maintain levels of genetic diversity similar to those in natural populations. The highly threatened Spanish species Silene hifacensis (Caryophyllaceae) has only three natural reduced mainland populations in the Iberian Peninsula, following decline and extinction that occurred during the late 20th century. Preterit restoration strategies were essentially based on the implantation of new populations and reinforcement of certain existing populations using transplants mostly cultivated in greenhouses. In the present contribution, levels and patterns of genetic variability within natural and restored populations of Silene hifacensis were assessed using the molecular technique AFLP. Our results pointed out significant genetic diversity differences across the three existing natural populations though their population fragmentation and progressive loss of individuals have not had an impact on the global genetic diversity of this species. For restored populations, their levels of genetic diversity were similar and even higher than in natural populations. As a result, the past restoration protocols were successful in capturing similar and even higher levels of genetic diversity than those observed within natural pools. However, inbreeding processes have been detected for two restored populations. Finally, the main source of plant material for the long-time restored transplants appears to be the natural population of Cova de les Cendres. This study demonstrates, once again, how genetic markers are useful tools to be taken in consideration for endangered plant species conservation plans.     

Genetic differentiation of two distinct chemotypes of Ferula communis (Apiaceae) in Sardinia (Italy)

The giant fennel, Ferula communis L. (Apiaceae) is a circum-Mediterranean species responsible of severe haemorrhagic intoxication of livestock. Electrophoretic analysis of 14 putative enzyme loci was carried out to assess genetic differentiation among poisonous and non-poisonous chemotypes of F. communis in Sardinia. Genetic structuring characterises all the five populations examined. However, differentiation was higher between poisonous and non-poisonous populations (P<0.00001), and was independent from geographic distances, suggesting a reduced gene flow between the two chemotypes.     

Weather and herbivores influence fertility in the endangered fern Botrychium multifidum (S.G. Gmel.) Rupr

Fluctuations in local weather conditions and other stochastic processes are important factors affecting species population persistence. We studied two differently sized populations of the rare and declining fern species Botrychium multifidum for 4 and 5 years, respectively. Individually marked plants in permanent plots were followed to detect trends in population size, reproductive success and dormancy in relation to local precipitation and temperature. Our applied logistic regression model suggests that the shortage of precipitation during summer decreases fertility in the next year in both populations. Invertebrate herbivory of the fertile part of the plant additionally diminishes the output of spores. We found the population size to be stable with a very low percentage of each population composed of juvenile plants. Stochastic processes and low recruitment could easily lead to the extinction of these populations.     

Genetic differentiation of Arthrobacter population from heavy metal-contaminated environment

Six samples containing extremely high concentration of Pb, Zn, and Cd were obtained from the layers of 5–10 cm and 25–30 cm three tailing piles, with ages of about 10, 20 and more than 80 years, respectively. Then, 48 bacterial strains were obtained from these samples, and subsequently their phylogenetic positions were determined by analysis on the partial sequence of 16S rRNA gene (fragment length ranging from 474 to 708 bp). These isolates were members of the Arthrobacter genus, phylogenetically close to A. keyseri and A. ureafaciens, with sequence ranging from 99.1% to 100%. Furthermore, genetic variation between subpopulations from different samples was revealed by analysis on their randomly amplified polymorphic DNA profile. Nei genetic distance showed that the greatest differentiation occurred between subpopulation A and C. Notably, either genetic distance between subpopulations from the layers of 5–10 cm and 25–30 cm of each tailing pile or between same layers of different tailing pile increased with the history of tailings. Moreover, correlation analysis showed that soluble Pb has a significantly negative relationship with Nei’ gene diversity of subpopulation. It was assumed that soluble Pb may be responsible for the reduced genetic diversity of the Arthrobacter population. Our data provided evidence that genetic differentiation of microbial populations was consistent with the changes of environmental factors, particularly heavy metals. Translated from Acta Ecologica Sinica, 2005, 25(10): 2569–2573 [译自: 生态学报]     

Genetic diversity of the endangered endemic Microcycas calocoma (Miq.) A. DC (Zamiaceae, Cycadales): Implications for conservation

The diversity and genetic structure of seven populations of Microcycas calocoma (Miq.) A. DC, were analyzed by gel electrophoresis using 19 allozymes. The mean number of alleles per locus (A) was 1.49 and the percentage of polymorphic loci was relatively high (P = 48.09). The mean observed (H_o) and expected heterozygosity (H_e) were 0.20 and 0.17, respectively. The F-statistics revealed a high population structure (F_st = 0.34). Mean gene flow between population pairs was Nm = 0.96. Results were compared with those of other cycad species, and indicate that M. calocoma populations have become fragmented due to increasing pressures of habitat conversion and disturbance. Also, geographical isolation among populations has generated allele loss in relation to altitude. The establishment and maintenance of protected areas for in situ conservation is critical to preserve the high genetic diversity of M. calocoma. Conservation strategy guidelines have been specified.     

Weak population differentiation in northern European populations of the endangered anadromous clupeid Alosa fallax

Examination of genetic structure among different spawning populations of the endangered twaite shad Alosa fallax showed statistically significant but weak differentiation estimated using nine microsatellite loci. Results point to substantial gene flow among the majority of individual estuary/river spawning locations, and no evidence that habitat disruption has led to increased local genetic drift.     

Phylogeography of the endangered tideland snail Batillaria zonalis in the Japanese and Ryukyu Islands

The phylogeography of the endangered tideland snail Batillaria zonalis in the Japanese and Ryukyu Islands was analyzed on the basis of nucleotide sequences of a mitochondrial gene for cytochrome oxidase c subunit I (COI). Extremely low genetic diversity was found in populations at both the northern and southern boundaries of the geographic distribution of this species in Japan, i.e., Sendai Bay and Iriomotejima Island, respectively, which might be attributed to the population bottleneck due to historical environmental variations and/or the recent foundation of populations in the marginal part of the inhabitable range. Most populations contained unique rare haplotypes, and significant genetic differentiation on the whole was shown, while no clear geographic genetic structure was detected between the Japanese and Ryukyu Islands or over the distribution area of B. zonalis in Japan, with the exception of significant genetic divergences in Ago Bay in the central part of Honshu and the southern part of Okinawajima Island.     

Genetic analysis and conservation of the endangered Canary Island woody sow-thistle, Sonchus gandogeri (Asteraceae)

Sonchus gandogeri, a woody sow-thistle, is an endangered Canary Island endemic with only two known populations, one in the El Golfo and another in the Las Esperillas of El Hierro. Amplified fragment length polymorphism (AFLP) markers were used to assess the genetic variation within and among populations. The mean genetic diversity of two populations was estimated to be 0.380, and the El Golfo population (0.380) had higher genetic diversity than the southeastern one (0.268). The unbiased Neis genetic identity between the two populations was 0.846. The mean genetic diversity of S. gandogeri was much higher than that of the other endangered plant species. This is perhaps due to breeding system, life form, extinction, and/or introgressive hybridization and hybrid origin of the taxon. This study also indicates that the two populations are not strongly differentiated (G_ST=0.149). This study suggests that S. gandogeri is more likely to become extinct due to environmental or demographic forces than genetic factors, such as inbreeding depression. More strict control of introduced herbivores is necessary to protect these populations, and germplasm collection for ex situ conservation is needed.     

DNA fingerprinting and the problems of paternity determination in an inbred captive population of guinea baboons (Papio hamadryas papio)

Multilocus DNA fingerprinting was carried out on 65 individuals from a captive colony of guinea baboons (Papio hamadryas papio) at Brookfield Zoo, in order to determine the allocation of reproductive success among 7 active males. DNA fingerprinting was found to reveal very low levels of genetic variability in the study population, rendering discrimination of different levels of relatedness, and hence paternity, impossible. A method was therefore developed for emphasizing the region of the fingerprint pattern which revealed the greatest level of band variability, and the effect of this experimental modification on band sharing statistics was tested. Band sharing coefficients among unrelated individuals were significantly lower using the modified system, which was then applied to paternity testing in the whole population. However even when using the modified system, of the 33 offspring analyzed only 4 could be assigned solely to 1 male, 14 offspring were assigned to 1 of 2 males, 7 offspring had 3 potential fathers, and the remainder had 4 or more possible fathers. The implications of the limitations of these data for behavioural studies and genetic management of captive populations are discussed.     

Genetic diversity and population structure of endangered Isoetes coreana in South Korea based on RAPD analysis

Isoetes coreana Chung and Choi is on the list of critically endangered species in South Korea. Using randomly amplified polymorphic DNA (RAPD) markers, we investigated the genetic diversity within and between seven local populations of I. coreana. Ten RAPD primers produced a total of 94 bands, of which 59 (62.8%) were polymorphic. A low level of genetic diversity was recognized within the populations of I. coreana: polymorphic loci (P), with values ranging from 3.4% to 33.9%, and a mean value of 15.5% being observed. Analysis of molecular variance (AMOVA) showed that genetic diversity was greater among populations (81.6%) than within populations (19.7%) or among the three regions included in this study (Han River, Youngsan River, and Nakdong River). In addition, a high degree of genetic differentiation (θ^B = 0.742) was detected among the populations. These results indicate that genetic differentiation has occurred very rapidly. However, the rate of gene flow between populations was found to be as low as 0.059, irrespective of the genetic and geographical distances between the populations, which indicates that genetic drift must have played an important role in forming the present populations of I. coreana. Because a reduction of genetic diversity as a result of genetic drift is undesirable, increasing the gene flow between populations of Korean quillwort I. coreana should be considered as a conservation strategy.     

Genetic differentiation in Hippocrepis emerus (Leguminosae): allozyme and DNA fingerprint variation in disjunct Scandinavian populations

The structure of genetic variation in disjunct Scandinavian populations of Hippocrepis emerus was studied using allozymes and DNA fingerprinting. Variation in the three native regional populations in Scandinavia was compared with that in a recently introduced population in Sweden. In contrast to the recently introduced population, the native Scandinavian isolates of H. emerus showed high levels of allozyme fixation and low levels of DNA diversity. Variation in allozymes and at DNA fingerprint loci showed closely congruent patterns of geographic variation, with pronounced differentiation between the native Norwegian and Swedish isolates of the species. The structure of genetic variation in native Scandinavian H. emerus is interpreted in terms of historical population bottlenecks and founder events during the species' postglacial immigration into Scandinavia.     

Genetic structure of chukar partridge ( Alectoris chukar) populations in the Longdong Loess Plateau, China

This study used polymerase chain reaction (PCR) and dideoxy direct sequencing methods to analyze the genetic structure of the chukar partridge (Alectoris chukar) in the Longdong Loess Plateau, northwestern China. A total of 491 nucleotides of mitochondrial DNA from the control region gene were sequenced for 78 chukar partridges from eight different populations. The 24 variable positions defined 25 haplotypes. The high gene flow (Nm=3.75) implied little genetic differentiation between the eight populations. All the populations shared the haplotype C_1, which suggested that they all came from a common ancestor. The 25 haplotypes were spread through the populations, but could be clustered into two groups. The haplotype similar index between the two groups was only 0.15, with a genetic distance of 0.43%. The genetic variation was significantly different between the two groups, which had been isolated for all of recorded history. The genetic structure of chukar partridge populations in the Plateau appears to be the result of the synergistic effect of a glacier, along with debris flow and human activities since the middle of the Pleistocene.Communicated by F. Bairlein     

Phytochemical attributes of endemic endangered primrose (Primula heterochroma Stapf.) accessions grown in Iran

Primula heterochroma is indigenous to Caspian coast forests in the north of Iran. Total phenols, total flavnoids, total carotenoids and antioxidant capacity of 50 P. heterochroma accessions were investigated. The highest total phenol (1272.31 mg GA equivalent/100 g fresh weight) and total flavonoids (615 mg catechin/100 g fresh weight) were observed in G5 accession from Saravan. The highest antioxidant activity was observed in G14 accession (73.03 %) from Kacha, followed by G2 accession (69.75 %) and G5 accession (66.84 %) from Saravan. The results of HPLC analysis showed that quercetin-3-glucoside was the major phenolic compound widely found in these accessions followed by chlorogenic acid. There was a linear relationship between the antioxidant capacities and the total phenols and total flavonoid. Inversely, there was no statistically significant correlation between total carotenoid and antioxidant activity. Based on the path coefficient analysis, the maximum direct effect on antioxidant was observed in total phenols (0.908). In addition, the cluster analysis based on Euclidean distance with Unweighted pair-group method using arithmetic average (UPGMA) method separated the accessions into four main groups. Our results supported that Iranian wild primrose accessions possess valuable antioxidant properties for therapeutic and potential medicinal use.

Electronic supplementary material

The online version of this article (doi:10.1007/s12298-015-0328-9) contains supplementary material, which is available to authorized users.     

Genetic diversity and population structure of the endangered and medically important Rheum tanguticum (Polygonaceae) revealed by SSR Markers

Rheum tanguticum (Polygonaceae), an endangered plant, is endemic to the Qinghai-Tibetan Plateau. A total of 114 individual of R. tanguticum from 10 geographically separate populations were analyzed using seven pairs simple sequence repeats (SSR) markers. 102 alleles were recorded, with an average of 14.6 alleles per locus (ranging from 13 to 17) and the expected heterozygosity (H_e) ranged from 0.384 to 0.515 (average 0.459). The genetic differentiation between populations was relatively high (F_st = 0.249); the gene flow (N_m = 0.754), however, was limited, which suggested that around 21.18% of the total genetic variations occurred between populations. Our results revealed high levels of genetic variations within and between populations. The endangered status of this species is probably due to harvesting of the wild populations, rather than a lack of the genetic diversity. Anthropologic effects as well as other factors may, together, have shaped the genetic structure of this species.     

Genetic differentiation between two color morphs of Gerres erythrourus (Perciformes: Gerreidae) from the Indo-Pacific region

A portion of the mitochondrial 16S rRNA gene was compared between two color morphotypes of Gerres erythrourus, viz. “yellow type” and “white type,” obtained from Ryukyu Islands, Japan, and various areas of the Indo-Pacific, respectively. Phylogenetic analyses showed that the haplotypes of each color morph were reciprocally monophyletic, supported by high bootstrap values. The degree of sequence difference between the two color morphs was comparable to that existing between species of the same complex as well as other distinct gerreid species. The genetic results together with their geographic range indicated that the two color morphs represent two distinct species. Supplementary material to this paper is available in electronic format at http://dx.doi.org/10.1007/s10228-005-0324-0     

Genetic structure and mating system in the palila, an endangered Hawaiian honeycreeper, as assessed by DNA fingerprinting

We conducted DNA fingerprinting analyses to ascertain the mating system and population genetic structure of the palila, an endangered Hawaiian honeycreeper, which occupies a fragmented range on the Mauna Kea volcano of the island of Hawai'i. DNA fingerprinting of twelve complete families from the Pu'u La'au population revealed no evidence of extrapair fertilization or intraspecific brood parasitism. Band-sharing coefficients from fingerprints produced with two probes revealed that the large Pu'u La'au population on the southwest slope of Mauna Kea, and a smaller, geographically separate population on the east slope (at Kanakaleonui) had relatively high and virtually identical levels of minisatellite variability (mean S of 0.27 for each population based on combined data of M13 and Jeffreys 33.15 probes). The two populations also had nearly identical allele frequencies based on their mean corrected similarity, S_ij, of 0.98. These data suggest that the two populations have not been fragmented long and/or have sufficient current gene flow to ameliorate any affects of genetic drift. We conclude that present levels of inbreeding are low within both populations, and that proposed translocations of individuals from Pu'u La'au to Kanakaleonui appear appropriate from a genetic standpoint.