Studies on pachytene and somatic chromosomes ofPhaseolus mungo L.

The pachytene and somatic chromosomes ofPhaseolus mungo L. (2n=22), were identified and classified on the basis of their relative length, arm ratio, chromomere pattern and nucleolar association. A comparison of the karyotypes during the somatic and pachytene stages, revealed that some chromosomes are of different relative lengths during the two phases. Thus, the two nucleolar organizer chromosomes are the 2nd and 3rd longest at somatic metaphase, but only 7th and 9th longest during pachytene. The pachytene chromosomes belong to the differentiated group.     

Morphology of the pachytene chromosomes of the Indian diploidSolanum nigrum L.

The pachytene chromosome morphology of a locally occurring diploid form ofSolanum nigrum L. (n=12) was studied. The pachytene chromosomes are charaterised by the presence of (1) chromatic and achromatic segments, (2) distinct centromeres and (3) macrochromomeres (telomeres) terminating the chromosome arms. The twelve bivalents are identified individually and described.     

PACHYTENE CHROMOSOMES OF THE POTATO (SOLANUM TUBEROSUM,GROUP ANDIGENA)

The morphology of the pachytene chromosomes of haploids (2n = 24) of Solanum tuberosum Group Andigena (2n = 48) is described. Chromosome identification is based primarily on the characteristics of chromatic regions, presence of distinct chromomere(s) in the achromatic regions, and the occurrence of prominent telochromomeres. Chromosomes V, XI and XII have approximately median centromeres. Chromosome II is associated with the nucleolus, and the variation in satellite size of this chromosome can be used as cytological marker for future studies. Comparisons of pachytene chromosomes from different haploids and their hybrids support the concept that the two genomes in Andigena are quite similar. The striking similarity between the potato and tomato chromosomes suggests interesting studies on the evolutionary relationships of these plants.     

番茄的CPD带型和45S rDNA位点的鉴别

采用CPD（PI和DAPI组合）染色对番茄减数分裂粗线期和有丝分裂中期染色体进行了显带分析,随后用两种不同的45S rDNA克隆在相同的分裂相进行了荧光原位杂交定位分析。CPD染色在8条粗线期染色体上显示出了10条红色的CPD带纹,在6对有丝分裂中期染色体上显示出了12条CPD带纹。有丝分裂中期染色体上的CPD带纹与粗线期染色体上显著的带纹具有对应性。用改良的CPD染色程序清晰而稳定地显示出这些特征性的CPD带纹为番茄的染色体,特别是有丝分裂中期染色体提供了新的识别标记。用番茄的一个45S rDNA克隆进行的荧光原位杂交,不仅在位于2号染色体短臂的随体上显示了强的杂交信号,而且在粗线期染色体的5个CPD带区或有丝分裂中期染色体的4对CPD带区显示了弱的杂交信号。然而,用来自小麦的45S rDNA克隆pTa71进行的原位杂交却只在随体上显示了杂交信号。鉴于所用的两个45S rDNA克隆在序列上的差异,推断在番茄基因组中只有随体含有45S rDNA单位的编码区,即番茄只有一对45S rDNA位点。     

Location and variation of the constitutive heterochromatin in Petunia hybrida

The location of heterochromatin in the chromosomes of Petunia hybrida (2n=14) is presented. C-banded mitotic metaphase chromosomes and carmine-stained pachytene bivalents have been studied. It is shown that the heterochromatin is predominantly located near the centromeres and at the secondary constrictions of the satellite chromosomes. The distribution of chromomeres in pachytene bivalents also reveals that heterochromatin is not restricted to distinct blocks, as is the case in tomato, but occurs in smaller chromomeres which gradually decrease in size towards the ends. Conspicuous telomeres have not been observed. Both C-banding technique and pachytene analysis demonstrate large variation of heterochromatin between different lines of Petunia. The study of pachytene morphology has been hampered by a high degree of non-specific stickiness of the bivalents. Both techniques prove to be unsuitable tools for large-scale chromosome identification of Petunia lines.     

Morphology and behavior of the sex chromosomes in meiosis in four vole species of the genus Microtus]

Morphology and behaviour of the X and Y chromosomes of four species of genus Microtus were studied at pachytene, metaphase I and meiotic metaphase. The X chromosomes of the species varied with respect to their size and location of heterochromatic blocks. The axes of X and Y chromosomes of these species as well as Microtus agrestis never formed true synaptonemal complexes at any sub-stage of the pachytene. They approached each other at the start of the pachytene throughout to metaphase I, getting situated closely. At the end of the pachytene, they formed sex vesicle. The X and Y chromosomes kept their proximity during metaphase I, but never formed true bivalents. It is suggested that lack of synapsis of the X and Y chromosomes in the genus Microtus is the final step of evolutionary trend to reduction of the size of the pseudo-autosomal region. The abolition of restrictions on homology between the X and Y chromosomes is supposed to be a cause for the fast divergence in morphology of sex chromosomes in the genus.     

Further studies on polyploid amphibians (Ceratophrydidawe)

Odontophrynus cultripes Reinhardt and Lutken, 1862 has 22 chromosomes in its diploid complement. Spermatocyte I contained 11 ring bivalents and metaphase II exhibited 11 chromosomes. Odontophrynus americanus (Duméril and Bibron) 1882 has 44 chromosomes in somatic as well as germ cells, these can be sorted into 11 groups of homologues. Metaphase I showed varying numbers of quadrivalents and metaphase II exhibited 22 dyads. Ceratophrys dorsata Wied., 1824 has 104 chromosomes in somatic and germ cells; these 104 chromosomes comprise 8 each of 13 kinds of homologues. The spermatocyte I contained ring octovalents and other multivalents, and metaphase II 52 chromosomes. The above findings indicate that evolution by polyploidization occurred in South American frogs belonging to the family Ceratophrydidae.This work was supported by a grant (GM-14577-01) from the National Institute of General Medical Sciences U. S. Public Health Service.     

Karyotypes of cattle (Bos taurus) and horses (Equus caballus) on the basis of synaptonemal complexes

The cytogenetic study performed has shown that karyotyping of meiotic cells can be based on the synaptonemal complexes (SC) of spreading pachytene spermatocytes of bull and of horse. The horse SC karyotype has not been previously described. A comparison of the relative length of SC with metaphase chromosomes of bull and horse somatic cells has revealed the correspondence of the chromosome length in pachytene of meiosis and metaphase, which is in agreement with the data on house mouse and Chinese hamster. The method of spreading pachytene cells may be of great practical importance in studies of the fertility disturbances in farm animals.     

Integrated cytogenetic map of mitotic metaphase chromosome 9 of maize: resolution,sensitivity, and banding paint development

To study the correlation of the sequence positions on the physical DNA finger print contig (FPC) map and cytogenetic maps of pachytene and somatic maize chromosomes, sequences located along the chromosome 9 FPC map approximately every 10 Mb were selected to place on maize chromosomes using fluorescent in situ hybridization (FISH). The probes were produced as pooled polymerase chain reaction products based on sequences of genetic markers or repeat-free portions of mapped bacterial artificial chromosome (BAC) clones. Fifteen probes were visualized on chromosome 9. The cytological positions of most sequences correspond on the pachytene, somatic, and FPC maps except some probes at the pericentromeric regions. Because of unequal condensation of mitotic metaphase chromosomes, being lower at pericentromeric regions and higher in the arms, probe positions are displaced to the distal ends of both arms. The axial resolution of FISH on somatic chromosome 9 varied from 3.3 to 8.2 Mb, which is 12-30 times lower than on pachytene chromosomes. The probe collection can be used as chromosomal landmarks or as a "banding paint" for the physical mapping of sequences including transgenes and BAC clones and for studying chromosomal rearrangements.     

A high-resolution karyotype of cucumber (Cucumis sativus L. 'Winter Long') revealed by C-banding, pachytene analysis, and RAPD-aided fluorescence in situ hybridization.

Using molecular cytogenetic DNA markers, C-banding, pachytene analysis, and fluorescence in situ hybridization (FISH), a high-resolution karyotype was established in the cucumber. C-banding showed distinct hetero chromatic bands on the pericentromeric, telomeric, and intercalary regions of the chromosomes. The C-banding patterns were also consistent with the morphology of 4'-6-diamino-2-phenylindole dihydrochloride (DAPI)-stained pachytene chromosomes. Two repetitive DNA fragments, CsRP1 and CsRP2, were obtained by PCR and localized on the mitotic metaphase and meiotic pachytene chromosomes. CsRP1 was detected on the pericentromeric heterochromatic regions of all chromosomes, except chromosome 1. CsRP2 was detected on 5 (chromosomes 1, 2, 3, 4, and 7) of 7 chromosomes. All homologous chromosome pairs could be distinguished by FISH using 2 RAPD markers. This is the first report on molecular karyotyping of mitotic and meiotic spreads of cucumber.     

Karyotype analysis: The detection of chromosomal alterations in the somatic karyotype of Zea mays L.

Mitotic analyses, directed at the problem of detection of chromosomal alterations in the somatic karyotype, were performed using six reciprocal interchanges of Zea mays L., all involving chromosome 9S. In addition, two normal stocks, a homozygous inbred and a commercial hybrid were examined. The minimum chromosome alteration in 9S detected in somatic metaphase was a decrement measured as 50% of the pachytene chromosome; an increment to 9S measured as 40% of the pachytene chromosome was not detected. However, a 10% meiotic increment to 5L was observed. Ascertainment in mitotic metaphase of chromosomal alterations in maize, of the type that change chromosome length and/or centromere position, appears to be dependent upon centromere position (metacentric, aerocentric) in addition to the nature of the alteration (increment or decrement). Relatively short alterations may be detected in metacentric, but not in the submetacentric or acrocentric chromosomes. A decrement rather than an addition segment in a non-metacentric chromosome appears more readily detectable in somatic metaphase.     

DNA content of heterochromatin and euchromatin in tomato (Lycopersicon esculentum) pachytene chromosomes.

Lycopersicon esculentum (tomato) has a small genome (2C = 1.90 pg of DNA) packaged in 2n = 2x = 24 small acrocentric to metacentric chromosomes. Like the chromosomes of other members of the family Solanaceae, tomato chromosomes have pericentromeric heterochromatin. To determine the fraction of the tomato genome found in euchromatin versus heterochromatin, we stained pachytene chromosomes from primary microsporocytes with Feulgen and analyzed them by densitometry and image analysis. In association with previously published synaptonemal complex karyotype data for tomato, our results indicate that 77% of the tomato microsporocyte genome is located in heterochromatin and 23% is found in euchromatin. If heterochromatin is assumed to contain few active genes, then the functional genes of the tomato must be concentrated in an effective genome of only 0.22 pg of DNA (1C = 0.95 pg x 0.23 = 0.22 pg). The physical segregation of euchromatin and heterochromatin in tomato chromosomes coupled with the small effective genome size suggests that tomato may be a more useful subject for chromosome walking and gene mapping studies than would be predicted based on its genome size alone. Key words : tomato, Lycopersicon esculentum, genome size, heterochromatin, euchromatin, pachytene chromosomes, synaptonemal complex.     

Localization of single- and low-copy sequences on tomato synaptonemal complex spreads using fluorescence in situ hybridization (FISH)

Fluorescence in situ hybridization (FISH) is a powerful means by which single- and low-copy DNA sequences can be localized on chromosomes. Compared to the mitotic metaphase chromosomes that are normally used in FISH, synaptonemal complex (SC) spreads (hypotonically spread pachytene chromosomes) have several advantages. SC spreads (1) are comparatively free of debris that can interfere with probe penetration, (2) have relatively decondensed chromatin that is highly accessible to probes, and (3) are about ten times longer than their metaphase counterparts, which permits FISH mapping at higher resolution. To investigate the use of plant SC spreads as substrates for single-copy FISH, we probed spreads of tomato SCs with two single-copy sequences and one low-copy sequence (ca. 14 kb each) that are associated with restriction fragment length polymorphism (RFLP) markers on SC 11. Individual SCs were identified on the basis of relative length, arm ratio, and differential staining patterns after combined propidium iodide (PI) and 4', 6-diamidino-2-phenylindole (DAPI) staining. In this first report of single-copy FISH to SC spreads, the probe sequences were unambiguously mapped on the long arm of tomato SC 11. Coupled with data from earlier studies, we determined the distance in micrometers, the number of base pairs, and the rates of crossing over between these three FISH markers. We also observed that the order of two of the FISH markers is reversed in relation to their order on the molecular linkage map. SC-FISH mapping permits superimposition of markers from molecular linkage maps directly on pachytene chromosomes and thereby contributes to our understanding of the relationship between chromosome structure, gene activity, and recombination.     

Integration of the FISH pachytene and genetic maps of Medicago truncatula

A molecular cytogenetic map of Medicago truncatula (2n = 2x = 16) was constructed on the basis of a pachytene DAPI karyogram. Chromosomes at this meiotic prophase stage are 20 times longer than at mitotic metaphase, and display a well differentiated pattern of brightly fluorescing heterochromatin segments. We describe here a pachytene karyogram in which all chromosomes can be identified based on chromosome length, centromere position, heterochromatin patterns, and the positions of three repetitive sequences (5S rDNA, 45S rDNA and the MtR1 tandem repeat), visualized by fluorescence in situ hybridization (FISH). We determined the correlation between genetic linkage groups and chromosomes by FISH mapping of bacterial artificial chromosome (BAC) clones, with two to five BACs per linkage group. In the cytogenetic map, chromosomes were numbered according to their corresponding linkage groups. We determined the relative positions of the 20 BACs and three repetitive sequences on the pachytene chromosomes, and compared the genetic and cytological distances between markers. The mapping resolution was determined in a euchromatic part of chromosome 5 by comparing the cytological distances between FISH signals of clones of a BAC contig with their corresponding physical distance, and showed that resolution in this region is about 60 kb. The establishment of this FISH pachytene karyotype, with a far better mapping resolution and detection sensitivity compared to those in the highly condensed mitotic metaphase complements, has created the basis for the integration of molecular, genetic and cytogenetic maps in M. truncatula.     

Complete chromomere map of mid/late pachytene human oocytes.

A complete chromomere map of the mid/late human pachytene oocyte has been developed from ovaries of 35 fetuses at 18-22 weeks gestation. Bivalents, which were all specifically identifiable, were more extended than comparable human spermatocyte bivalents. The total number of chromomeres found was 639, exceeding both the number of human pachytene spermatocytes and the number of mitotic bands seen in metaphase somatic chromosomes. Each oocyte bivalent contained more chromomeres than the number of corresponding prometaphase chromosome bands. Similarities and differences were noted in regional comparisons of chromomere distribution between oocytes and spermatocytes.     

Meiotic association and segregation of the achiasmatic giant sex chromosomes in the male field vole (Microtus agrestis)

Controversy exists regarding the meiotic behaviour of the giant sex chromosomes during spermatogenesis in the field vole, Microtus agrestis. Both univalents and bivalents have been observed between diakinesis and metaphase I. These differences seem to be dependent on the technique used. The present study employs electron microscopy of serially sectioned testes tubules and light microscopy of microspread preparations to re-examine the behaviour of sex chromosomes during meiosis. In microspreads, about one-third of the early pachytene nuclei examined showed end joining of the X and Y axes. The longitudinal heterogeneity of the chromosomes in the form of axial thickenings allowed the detection of two different end-joining patterns. In the remaining early pachytene cells as well as in all mid to late pachytene cells seen, the X and Y axes had, though near to each other, no contact in the form of a synaptonemal complex. If a synaptonemal complex is a prerequisite for genetic exchange, the sex chromosomes in M. agrestis males must be achiasmatic. The analysis of serial sections through an early pachytene and a late prophase I nucleus with the electron microscope revealed that the sex chromosomes occupied a common area. By metaphase I, the centromeres of the X and Y were oriented towards opposite spindle poles while the chromosomes remained attached to one another by their distal segments at the level of the metaphase I plate. As a consequence of the large size of the sex chromosomes their centromeres lay close to the spindle poles. In anaphase I the sex chromosomes maintained their metaphase position until the autosomes approached the spindle poles. During autosomal migration a medial constriction developed where the sex chromosomes were mutually associated, the X and Y became separated, and joined the autosomes. In metaphase II the chromatids of the sex chromosomes lay side by side and exhibited a delayed separation in the subsequent anaphase. It is suggested that heterochromatin, which represents a major part of both sex chromosomes, plays a role in the association of the two achiasmatic sex chromosomes in metaphase I and in the delayed separation of the chromatids of the sex chromosomes in anaphase II.Dedicated to Prof. C.-G. Arnold (Erlangen) on the occasion of his 60th birthday     

The measurement of packing and contraction in chromosomes

Summary The observations of lengths of chromosomes in salivary glands at pachytene and in mitotic and meiotic metaphases are consistent with the observed coiling of the chromosomes in mitosis and meiosis in plants, animals and Protista, and with the doubly-refractive properties of the chromomeres and chromosomes, on various possible assumptions with regard to the packing of the spiral and the internal changes correlated with spiralisation.Further measurements of the kind that are brought together here, as well as advances from the chemical side, should make it possible to discriminate between these assumptions. It seems likely that different states of packing are responsible for the different degrees of mechanical and chemical stability at various stages in the development of spirals. And further that spirals microscopically visible at metaphase may be beyond the range of visibility at an earlier stage in their development.We are indebted to Dr.Klaus Pätau and Mr.M. J. D. White for the use of unpublished data.     

Autosomal synaptonemal complexes and sex chromosomes without axes in Triatoma infestans (Reduviidae; Hemiptera)

Meiotic and somatic cells at interphase in Triatoma infestans are characterized by the formation of a large chromocenter, which was assumed to contain the whole of the three large pairs of autosomes and the sex chromosomes. Observations with C-banding techniques show that the chromocenter is formed only by the terminal and subterminal heterochromatic blocks of the three large pairs of autosomes and the sex chromosomes. During pachytene the two largest autosomal pairs loop on themselves and their condensed ends form the chromocenter, together with the single heterochromatic end of the third autosomal pair. The X and Y chromosomes seem to associate with these condensed ends by their affinity for C-heterochromatin. During a very short pachytene stage, bivalents and synaptonemal complexes (SCs) are observed. Pachytene is followed by a very long diffuse stage, during which SCs are disassembled, multiple complexes aggregate on the inner face of the chromocenter and finally all complexes disappear and a dense material is extruded to the cytoplasm through the annuli. The 3-dimensional reconstruction of early pachytene chromocenters show 3 SCs entering and tunnelling the chromocenter, while during mid-pachytene 4 SCs enter this mass and a 5th SC is in a separate small mass. The looping of a whole SC which has both ends in the chromocenter was shown by the reconstructions. These data are interpreted as the progressive looping of the two largest bivalents during pachytene, forming finally the association of 5 bivalent ends corresponding to the 5 C-banding blocks of the large autosomal pairs. No single axis or SC that could be ascribed to the sex chromosomes was found. This agrees with the pachytene microspreads, which show only 10 SCs corresponding to the autosomal bivalents. The X and Y chromosomes are enclosed in the chromocenter, as shown by the unravelling chromocenters at diplotene-diakinesis. Thus the sex chromosomes do not form axial condensations, and this fact may be related to the ability of the X and Y chromosomes to divide equationally at metaphase I. SCsThis paper is dedicated to the memory of the late Professor Francisco A. Saez     

A high-resolution karyotype of <Emphasis Type="Italic">Brassica rapa</Emphasis> ssp. <Emphasis Type="Italic">pekinensis</Emphasis> revealed by pachytene analysis and multicolor fluorescence in situ hybridization

A molecular cytogenetic map of Chinese cabbage (Brassica rapa ssp. pekinensis, 2n=20) was constructed based on the 4-6-diamino-2-phenylindole dihydrochloride-stained mitotic metaphase and pachytene chromosomes and multicolor fluorescence in situ hybridization (McFISH), using three repetitive DNA sequences, 5S rDNA, 45S rDNA, and C11-350H. The lengths of mitotic metaphase chromosomes ranged from 1.46 m to 3.30 m. Five 45S and three 5S rDNA loci identified were assigned to different chromosomes. The C11-350H loci were located on all the mitotic metaphase chromosomes, except chromosomes 2 and 4. The pachytene karyotype consisted of two metacentric (chromosomes 1 and 6), five submetacentric (chromosomes 3, 4, 5, 9 and 10), two subtelocentric (chromosomes 7 and 8), and one acrocentric (chromosome 2) chromosome(s). The mean lengths of ten pachytene chromosomes ranged from 23.7 m to 51.3 m, with a total of 385.3 m, which is 17.5-fold longer than that of the mitotic metaphase chromosomes. In the proposed pachytene karyotype, all the chromosomes of B. rapa ssp. pekinensis can be identified on the basis of chromosome length, centromere position, heterochromatin pattern, and the location of the three repetitive sequences. Moreover, the precise locations of the earlier reported loci of 5S rDNA, 45S rDNA, and Chinese cabbage tandem DNA repeat C11-350H were established using McFISH analysis. We also identified a 5S rDNA locus on the long arm of pachytene bivalent 7, which could not be detected in the mitotic metaphase chromosomes in the present and earlier studies. The deduced karyotype will be useful for structural and functional genomic studies in B. rapa.     

New occurrence of microchromosomes B in Moenkhausia sanctaefilomenae (Pisces, Characidae) from the Paraná River of Brazil: analysis of the synaptonemal complex

The Moenkhausia sanctaefilomenae specimens showed a karyotype consisting of 2n = 50 chromosomes with 12 metacentrics, 36 submetacentrics and two subtelocentrics. In addition to the basic karyotype, all the males specimens have cells ranging from zero to two B microchromosomes in mitotic metaphases. These chromosomes were not observed in the female specimens. C-band analysis showed a distribution pattern of characteristic heterochromatin with interstitial and centromeric blocks. However, the B chromosomes were faintly stained with C-banding and were not fluorescent with CMA₃ staining. The meiotic studies showed the formation of bivalents in metaphase I and in pachytene under an optical microscope. Through synaptonemal complex analysis with an electron microscope, the pachytene showed 25 bivalents completely paired and a small bivalent corresponding to the B chromosomes. In the same preparation, one of the B chromosomes was observed in a univalent form. On the basis of pairing behavior and morphology it is assumed that B chromosomes of M. sanctaefilomenae show homology between them and their evolutionary aspects are discussed. This revised version was published online in July 2006 with corrections to the Cover Date.