Latitudinal Variation in Termite Species Richness and Abundance along the Brazilian Atlantic Forest Hotspot

In this study, we investigated the termites of the Brazilian Atlantic Forest, one of the most threatened biodiversity hotspots in the world, in regularly spaced sites from 7° S to 27° S latitude. To our knowledge, this is the only report of a latitudinal survey of termites at species level performed with a standardized sampling protocol. We evaluate termite diversity and abundance, and describe patterns of species composition based on feeding groups along the latitudinal gradient. We also describe the relative contribution of environmental variables to explain diversity patterns. Termite assemblages were investigated by standardized surveys at 15 Atlantic Forest sites, on six transects divided into five sections of 10 m², with 30 sections per site (or 300 m²/site), which were investigated by one trained person for one hour. Observed species richness and abundance were negatively correlated with latitude. The influence of latitude was explained mainly by variables related to temperature, precipitation and ambient energy (potential evapotranspiration). Our results also suggest that temperature exerts a greater constraint on Atlantic Forest termites than productivity, because ambient productivity increases with latitude in this forest but termite diversity decreases. Termite species richness in the Atlantic Forest showed a different pattern than those described for other organisms, increasing in diversity where the coastal‐forest strip narrows. Overall, our results indicate comparatively high termite species richness at northeastern sites and a significant impoverishment of termite assemblages in the southeastern and southern regions of the Atlantic Forest.     

Floristic relationships of the woody component in rocky outcrops savanna areas in Central Brazil

Rocky outcrops usually have a peculiar vegetation which differs from that of the surrounding vegetation matrix. In Brazil, a savanna type (cerrado rupestre) is particularly characterized by rocky outcrops and is one of eleven vegetation types which occur throughout Cerrado biome. It has been scarcely studied in detail. Therefore, the aim of this study was to investigate the phytogeographical patterns of the woody species in ten areas of the rocky outcrop savanna in the Brazilian Central Plateau. The difference in spatial distribution of the species was assessed through indicator species and CCA ordination analyses. Ten indicator species showed significantly different distribution. The first axis of the ordination showed association with the edaphic gradient, based on maximum temperature, pH and physical properties of the soils (eigenvalue 0.63). The second axis showed an eigenvalue 0.46, associated with poor rainfall and land declivity. It appears that the woody flora of the rocky outcrop savanna areas of the Brazilian Central Plateau is relatively homogeneous, with low β diversity. Apparently, the size of the woody species populations is what distinguishes the ten investigated areas. Therefore, initiatives and actions for the Cerrado biome conservation must consider not only the size of the protected areas but also that of the populations to be protected, especially the woody species on rocky outcrops.     

Seasonal Abundance and Species Richness of Birds in Common Reed Habitats in Lake Erie

Abstract: Common reed (Phragmites australis) forms dense stands with deep layers of residual organic matter that negatively affects plant diversity and possibly habitat use by wetland birds. We sought to determine whether seasonal relative abundance and species richness of birds varied among 3 habitat types in Great Lakes coastal wetland complexes recently invaded by common reed. We used fixed-distance point counts to determine species relative abundances and species richness in edge and interior locales within common reed, cattail (Typha spp.), and meadow marsh habitats of various sizes during 2 summers (2001 and 2002) and 1 autumn (2001) at Long Point, Lake Erie, Ontario, Canada. We found that total relative abundance and species richness of birds were greater in common reed habitat compared to cattail or meadow marsh habitats. However, we also found that relative abundance of marsh-nesting birds was greater in meadow marsh habitat than in cattail and common reed during summer. Lastly, we found that, irrespective of habitat type, habitat edges had higher total relative abundance and species richness of birds than did habitat interiors. Our results show that common reed provides suitable habitat for a diversity of landbirds during summer and autumn but only limited habitat for many marsh-nesting birds during summer. Based on these results, we recommend restoration of meadow marsh habitat through reduction of common reed in Great Lakes wetlands where providing habitat for breeding marsh-nesting birds is an objective. Managers also might consider reducing the size of nonnative common reed stands to increase edge effect and use by birds, possibly including wetland birds.     

Patterns of Richness and Abundance in a Tropical African Leaf‐litter Herpetofauna1

I compared species richness and habitat correlates of leaf‐litter herpetofaunal abundance in undisturbed and selectively logged forests, and an abandoned pine plantation in Kibale National Park, Uganda. I sampled 50 randomly located 25 m² litter plots in each area during the wet and dry seasons in 1997. Ten anuran, five lizard, and three snake species were captured in plots over the study. Assemblage composition was most similar at logged and unlogged sites. The logged forest herpetofauna had higher species richness and abundance than the unlogged forest, but diversity was greater in the unlogged forest due to greater evenness. In contrast, the pine plantation site had the highest richness, abundance, and evenness of the three study sites, but species composition was distinct from the other areas. Herpetofaunal densities were significantly lower in all three areas during the dry season than in the wet season. During the dry season, soil moisture, litter mass, topography, shrub cover, and number of fallen logs were significant positive predictors of herpetofaunal presence in litter plots, but only soil moisture was significant in the wet season. The interaction of moisture and topography appears to be important in determining seasonal patterns of litter herpetofaunal distribution. Comparison of litter herpetofaunal studies across the tropics have shown that mid‐elevation faunas generally support fewer species than lowland faunas. Compared with other tropical mid‐elevation litter faunas, Kibale supports an intermediate number of species, but at lower densities than observed at any other mid‐elevation site reported in the literature.     

Bird Species Sensitivity in a Fragmented Landscape of the Atlantic Forest in Southern Brazil1

I tested whether terrestrial/understory habits, large body sizes, low tolerance to edge or to matrix habitat, and food/habitat specialization are characteristics of the most vulnerable bird species based on point counts conducted in 14 forest fragments in northern Paraná, southern region of the Brazilian Atlantic forest. In addition, the sensitivity level of each bird species to forest fragmentation in northern Paraná (high, medium, and low) was compared to the Viçosa region, another fragmented landscape of the Atlantic forest. Contrary to expectations, large body size and terrestrial/understory habits were not features clearly related to high sensitivity to forest fragmentation; but species with tolerance to edge did have lower sensitivity. I found also that specialized habitat/food were not good predictors of extinctions; the most specialized guilds, bamboo and vine‐tangle insectivores and trunk and twig insectivores, had a high number of species with low sensitivity. Patterns of sensitivity were compared for 75 bird species that occurred in both northern Paraná and Viçosa; higher incongruence occurred for 14 and 7 species considered as highly sensitive in Viçosa but were of medium or low sensitivity, respectively, in northern Paraná. These differences may occur because sensitivity to habitat fragmentation may vary from the center to the periphery of a species' geographic range. Geographic variation in patterns of sensitivity to forest fragmentation may be important for conservation planning.     

First host record of Epipompilus (Hymenoptera: Pompilidae) from Brazil and discussion of prey carriage mechanism

We register for first time the occurrence of Epipompilus tucumanus Evans, 1967 in Brazil, and record the spider Ariadna boliviana Simon, 1907 as its host. The observations were made in the National Park of Chapada dos Guimarães, Mato Grosso, Brazil. The prey carriage mechanism is described for first time for this genus, and we provide a video showing this behavior.     

Regeneration of Seasonal Deciduous Forest Tree Species in Long-Used Pastures in Central Brazil

We tested the relationship between the length of pasture use and the density, richness, and composition of naturally regenerating tropical seasonal deciduous forest in pastures. We sampled regenerating trees in 25 pastures distributed in four age classes ranging from < 6 to 40 yr of use. Density and composition of regenerating trees did not change with pasture age, but richness was lower in 25- and 40-yr-old pastures. Nonetheless, a number of species seem to be able to resprout even after 40 yr of ranching.     

Mesoscale Gradients of Herb Richness and Abundance in Central Amazonia1

There are few hypotheses to explain local understory diversity patterns. There is a consensus that climate and soil fertility affect understory density and diversity at large scales, but few studies addressed the mechanisms controlling density and diversity locally. Here, I examine patterns of abundance and diversity of three understory herb groups along gradients of soil nutrients and topography at the mesoscale (64 km²) in a wet tropical forest, and possible factors causing them. Herb richness, diversity, density, and cover were measured in fifty‐nine 250 × 2 m plots systematically distributed over Reserva Ducke, Manaus. Herb groups responded differently to environmental gradients. Whereas density and cover of pteridophytes increased with altitude and slope, Marantaceae density and cover decreased. Density of sedges increased with altitude, but did not vary with slope. Density and cover of Marantaceae and sedges but not pteridophytes increased with the soil cation content. Pteridophyte richness increased with slope whereas Marantaceae richness decreased, richness of both groups increased with cation content. Diversity increased with altitude for Marantaceae and decreased for pteridophytes. Some of these patterns agree with what is expected from herbs, such as the greater abundance of Marantaceae and sedges in flat and low altitude plots, where water availability is higher and probably also light, and the greater richness of Marantaceae and pteridophytes in higher nutrient plots. The unexpected results of higher abundance and richness of pteridophytes in slopes, instead of in bottomlands, suggest that biotic or litter‐mediated controls may be important to set these patterns.     

Edge Effects on Species Composition and Exotic Species Abundance in the North Carolina Piedmont

Edges between forest and non-forest habitats often have significant effects on forest microclimate and resource availability, with corresponding effects on species composition and abundance. Exotic species are often increased in abundance near forest edges. This increase in abundance could be either because of the increase in resource availability near edges, or because of increased dispersal into forest edges. We measured species composition and a set of geospatial variables on transects at 66 edges in the North Carolina Piedmont in an attempt to distinguish between these two factors. Mantel tests show that species composition is significantly different in forest edges than in the forest interior, but that this effect only penetrates about 5 m into the forest. Indicator species analysis finds several species that are indicative of edge communities, including trumpet vine (Campsis radicans), two drought-tolerant oak species (Quercus stellata and Q. falcata), a serviceberry (Amelanchier arboreum), and a common exotic species, tree-of-heaven (Ailanthus altissima). Poisson regression techniques showed that in both the seedling and tree strata of the forest, exotic species increased in abundance on flat sites with a high potential seed source. Mapping predicted exotic species abundance onto the landscape. We find that large-scale variation in exotic species abundance is due mostly to variation in potential seed sources, while small-scale variation relates more to edaphic factors. Our results stress that both dispersal and environmental filters are important for determining exotic species abundance, but potentially the filters operate at different spatial scales.     

Acoustic communities in an environmental gradient from native to urban areas in Central Brazil

As urban areas expand due to increasing human populations, natural habitats are diminishing in quantity and quality. We conducted a study to examine the response of diurnal acoustic communities along a gradient of environments, ranging from native to dense urban areas. We hypothesized that acoustic indices would decline with urbanization, transitioning from natural and rural areas to urban environments. We conducted the research in and around Brasília, Central Brazil. We deployed 24 digital recorders in native, rural, low-density and high-density urban areas. We employed five commonly used acoustic indices (ADI, ACI, NDSI, H and BI) to characterize the acoustic communities and represent the existing biodiversity numerically. We initially compared the index values across different land use types using a non-parametric rank sum test. Subsequently, we selected eight landscape metrics and performed a principal component analysis to summarize the surrounding matrix at each sampling point. We then employed generalized linear models to determine if the acoustic indices exhibited the anticipated variations. The results indicated significant variations in all indices among the different land use types, indicating their responsiveness to distinct acoustic communities and environmental characteristics. ADI, H and NDSI exhibited declining values from native to urban areas, while ACI and BI displayed the opposite trend. These findings underscore the influence of landscape structure on acoustic indices. Consequently, we concluded that adopting appropriate landscape planning, mainly through integrating natural and urban areas, could help preserve biodiversity in tropical urban regions.     

Genetic analysis reveals candidate species in the Scinax catharinae clade (Amphibia: Anura) from Central Brazil

Scinax (Anura: Hylidae) is a species-rich genus of amphibians (113 spp.), divided into five species groups by morphological features. Cladistic analyses however revealed only two monophyletic clades in these groups: Scinax catharinae and Scinax ruber. Most species from the S. catharinae clade are found in Atlantic rainforest, except for Scinax canastrensis,S. centralis, S. luizotavioi, S. machadoi,S. pombali and S. skaios. In the present work, specimens of Scinax collected in Chapada dos Guimarães, central Brazil, were morphologically compatible with species from theS. catharinae group. On the other hand, genetic analysis based on mitochondrial (16S and 12S) and nuclear (rhodopsin) sequences revealed a nucleotide divergence of 6 to 20% between Scinax sp. and other congeners from the Brazilian savannah (Cerrado). Accordingly, Bayesian inference placed Scinax sp. in the S. catharinae clade with high support values. Hence, these findings strongly indicate the presence of a new species in the S. catharinae clade from the southwestern portion of the Brazilian savannah. To be properly validated as a novel species, detailed comparative morphological and bioacustic studies with other taxa from Brazil such asS. canastrensis, S. centralis, S. luizotavioi, S. machadoi, S. pombali and S. skaios are required.     

DNA barcode and minibarcode identification of freshwater fishes from Cerrado headwater streams in Central Brazil

The extraordinary species diversity of the Neotropical freshwater fish fauna is world renown. Yet, despite rich species diversity, taxonomic and genetic resources for its Cerrado ichthyofauna remain poorly developed. We provide a reference library of 149 DNA barcodes for 39 species/lineages of Cerrado headwater stream fishes from the Brazilian Distrito Federal and nearby areas and test the utility of distance-based criteria, tree-based criteria and minibarcodes for specimen identification. Mean Kimura 2-parameter genetic distances within species to orders ranged 1·8–12·1%. However, mean intraspecific v. congeneric-interspecific distances (0·9–1·3%) overlapped extensively and distance-based barcoding failed to achieve correct identifications due to c. 4–12·1% error rates and 19·5% ambiguous identifications related to the presence of singletons. Overlap was reduced and best-match success rates improved drastically to 83·5% when Characidium barcodes representing potential misidentifications or undescribed species were removed. Tree-based monophyly criteria generally performed similarly to distance methods, correctly differentiating up to c. 85% of species/lineages despite neighbour-joining and Bayesian tree errors (random lineage-branching events, long-branch attraction). Five clusters (Ancistrus aguaboensis, Characidium spp., Eigenmannia trilineata, Hasemania hanseni and Hypostomus sp. 2) exhibited deep intraspecific divergences or para−/polyphyly and multiple Barcode Index Number assignments indicative of putative candidate species needing taxonomic re-examination. Sliding-window analyses also indicated that a 200 bp minibarcode region performed just as well at specimen identification as the entire barcode gene. Future DNA barcoding studies of Distrito Federal–Cerrado freshwater fishes will benefit from increased sampling coverage, as well as consideration of minibarcode targets for degraded samples and next-generation sequencing.     

Assessing Extinction Risk in Small Metapopulations of Golden‐headed Lion Tamarins (Leontopithecus chrysomelas) in Bahia State,Brazil

Golden‐headed lion tamarins (GHLTs; Leontopithecus chrysomelas) are endangered primates endemic to the Brazilian Atlantic Forest, where loss of forest and its connectivity threaten species survival. Understanding the role of habitat availability and configuration on population declines is critical for guiding proactive conservation for this, and other, endangered species. We conducted population viability analysis to assess vulnerability of ten GHLT metapopulations to habitat loss and small population size. Seven metapopulations had a low risk of extirpation (or local extinction) over the next 100 years assuming no further forest loss, and even small populations could persist with immediate protection. Three metapopulations had a moderate/high risk of extirpation, suggesting extinction debt may be evident in parts of the species’ range. When deforestation was assumed to continue at current rates, extirpation risk significantly increased while abundance and genetic diversity decreased for all metapopulations. Extirpation risk was significantly negatively correlated with the size of the largest patch available to metapopulations, underscoring the importance of large habitat patches for species persistence. Finally, we conducted sensitivity analysis using logistic regression, and our results showed that local extinction risk was sensitive to percentage of females breeding, adult female mortality, and dispersal rate and survival; conservation or research programs that target these aspects of the species’ biology/ecology could have a disproportionately important impact on species survival. We stress that efforts to protect populations and tracts of habitat of sufficient size throughout the species’ distribution will be important in the near‐term to protect the species from continuing decline and extinction.     

Arbuscular Mycorrhizal Fungi Community Structure,Abundance and Species Richness Changes in Soil by Different Levels of Heavy Metal and Metalloid Concentration

Arbuscular Mycorrhizal Fungi (AMF) play major roles in ecosystem functioning such as carbon sequestration, nutrient cycling, and plant growth promotion. It is important to know how this ecologically important soil microbial player is affected by soil abiotic factors particularly heavy metal and metalloid (HMM). The objective of this study was to understand the impact of soil HMM concentration on AMF abundance and community structure in the contaminated sites of South Korea. Soil samples were collected from the vicinity of an abandoned smelter and the samples were subjected to three complementary methods such as spore morphology, terminal restriction fragment length polymorphism (T-RFLP) and denaturing gradient gel electrophoresis (DGGE) for diversity analysis. Spore density was found to be significantly higher in highly contaminated soil compared to less contaminated soil. Spore morphological study revealed that Glomeraceae family was more abundant followed by Acaulosporaceae and Gigasporaceae in the vicinity of the smelter. T-RFLP and DGGE analysis confirmed the dominance of Funneliformis mosseae and Rhizophagus intraradices in all the study sites. Claroideoglomus claroideum, Funneliformis caledonium, Rhizophagus clarus and Funneliformis constrictum were found to be sensitive to high concentration of soil HMM. Richness and diversity of Glomeraceae family increased with significant increase in soil arsenic, cadmium and zinc concentrations. Our results revealed that the soil HMM has a vital impact on AMF community structure, especially with Glomeraceae family abundance, richness and diversity.     

Short‐term differences in animal assemblages in patches formed by loss and growth of habitat

Ecological theory predicts that habitat growth and loss will have different effects on community structure, even if they produce patches of the same size. Despite this, studies on the effects of patchiness are often performed without prior knowledge of the processes responsible for the patchiness. We manipulated artificial seagrass habitat in temperate Australia to test whether fish and crustacean assemblages differed between habitats that formed via habitat loss and habitat growth. Habitat loss treatments (originally 16 m²) and habitat growth treatments (originally 0 m²) were manipulated over 1 week until each reached a final patch size of 4 m². At this size, each was compared through time (0–14 days after manipulation) with control patches (4 m² throughout the experiment). Assemblages differed significantly among treatments at 0 and 1 day after manipulation, with differences between growth and loss treatments contributing to most of the dissimilarity. Immediately after the final manipulation, total abundance in habitat loss treatments was 46% and 62% higher than controls and habitat growth treatments, respectively, which suggests that animals crowded into patches after habitat loss. In contrast to terrestrial systems, crowding effects were brief (≤1 day), signifying high connectivity in marine systems. Growth treatments were no different to controls, despite the lower probability of animals encountering patches during the growth phase. Our study shows that habitat growth and loss can cause short‐term differences in animal abundance and assemblage structure, even if they produce patches of the same size.     

Pond-Breeding Amphibian Species Richness and Habitat Selection in a Beaver-Modified Landscape

ABSTRACT Beaver (Castor canadensis) activity creates wetland habitats with varying hydroperiods important in maintaining habitat diversity for pond-breeding amphibians with significantly different breeding habitat requirements. We documented pond-breeding amphibian assemblages in 71 freshwater wetlands in Acadia National Park, Maine, USA. Using 15 variables describing local pond conditions and wetland landscape characteristics, we developed a priori models to predict sites with high amphibian species richness and used model selection with Akaike's Information Criterion to judge the strength of evidence supporting each model. We developed single-species models to predict wood frog (Rana sylvatica), bullfrog (R. catesbeiana), and pickerel frog (R. palustris) breeding site selection. Sites with high species richness were best predicted by 1) connectivity of wetlands in the landscape through stream corridors and 2) wetland modification by beaver. Wood frog breeding habitat was best predicted by temporary hydroperiod, lack of fish, and absence of current beaver activity. Wood frog breeding was present in abandoned beaver wetlands nearly as often as in nonbeaver wetlands. Bullfrog breeding was limited to active beaver wetlands with fish and permanent water. Pickerel frog breeding sites were best predicted by connectivity through stream corridors within the landscape. As beavers have recolonized areas of their former range in North America, they have increased the number and diversity of available breeding sites in the landscape for pond-breeding amphibians. The resulting mosaic of active and abandoned beaver wetlands both supports rich amphibian assemblages and provides suitable breeding habitat for species with differing habitat requirements. Land managers should consider the potential benefits of minimal management of beavers in promoting and conserving amphibian and wetland diversity at a landscape scale.