Advances in plant cell type-specific genome-wide studies of gene expression

Cell is the functional unit of life.To study the complex interactions of systems of biological molecules,it is crucial to dissect these molecules at the cell level.In recent years,major progresses have been made by plant biologists to profile gene expression in specific cell types at the genome-wide level.Approaches based on the isolation of cells,polysomes or nuclei have been developed and successfully used for studying the cell types from distinct organs of several plant species.These cell-level data sets revealed previously unrecognized cellular properties,such as cell-specific gene expression modules and hormone response centers,and should serve as essential resources for functional genomic analyses.Newly developed technologies are more affordable to many laboratories and should help to provide new insights at the cellular resolution in the near future.     

泛素/蛋白酶体途径及其在高等植物有性生殖中的作用

泛素／蛋白酶体途径是真核细胞内蛋白质降解的主要途径之一,涉及细胞内一系列基本生理过程。本文就蛋白泛素／酶体途径的组成及生化特性,泛素／蛋白酶体途径的一些生物学功能,研究泛素／蛋白酶体途径的一些技术和方法,泛素／蛋白酶体途径与高等植物有性生殖等方面作了较全面论述。     

昆虫植食对植物有性生殖的影响

植物在个体发育的各个阶段都与不同的群落成员相互作用,如竞争的植物、有益的传粉者和敌对的植食动物。昆虫植食在各类生态系统中普遍存在,并可能对植物有性生殖产生各种影响。植食昆虫可通过对植物有性生殖结构的消耗直接对植物生殖产生影响,也可通过影响植物资源分配和花性状等改变传粉者服务,从而间接对植物有性生殖带来正面、负面或中性的影响。同一植物的植食昆虫和传粉者往往对植物的吸引性状 （如花大小、气味、颜色等）有相同的偏好,因此植食者与传粉者均能对植物有性生殖性状施加选择压力。本文从昆虫植食对植物有性生殖的直接影响、间接影响以及植食昆虫对植物有性生殖性状选择的影响三个方面进行综述,以期为昆虫植食和生物资源多样性保护相关研究提供参考。     

Arabinogalactan proteins in plant sexual reproduction

Summary Arabinogalactan proteins (AGPs) are a class of plant extracellular-matrix proteins believed to participate in a broad range of processes involving the plant cell surface. They are extremely abundant in female reproductive tissues and in pollen tubes, the haploid male structures that traverse the diploid female reproductive tissues to deliver sperms to the egg cells. The prevalence of AGPs in reproductive tissues has led to speculations that they play significant functional roles ranging from serving as nutrient resources to cell-cell recognition in plant reproduction. Recent research from several laboratories demonstrated functional participation by AGPs in reproductive processes and began to examine the mechanisms underlying these functional roles. An overview of these recent studies will be discussed with a historical perspective as well as with a view towards future studies in establishing the significance of AGPs that, as a class, they have prominent roles in plant sexual reproduction in multiple and diverse ways.     

细胞壁在植物生殖生长中的作用

植物细胞壁在生殖生长中起着重要作用,如胼胝质壁启动大小孢子母细胞的分化途径,影响大小孢子的发生和发育,启动花粉萌发和花粉管伸长;固定或稳定胚胎的极性轴,维持胚胎分化状况等。     

新疆郁金香营养生长、个体大小和开花次序对繁殖分配的影响

植物有性繁殖与资源分配的关系研究对于揭示植物生活史特征及繁育系统进化具有重要意义。新疆郁金香(Tulipa sinkiangensis)是新疆天山北坡荒漠带特有的一种多年生早春短命植物。在自然生境中,该物种仅以有性繁殖产生后代,每株能产生1-8朵花,且不同植株上的花数及果实数以及花序不同位置上的花与果实大小明显不同。本文通过对新疆郁金香有性繁殖与营养生长及植株大小的关系以及花序中不同位置花及果实间的资源分配研究,旨在揭示营养生长、个体大小及开花次序对其繁殖分配的影响。结果表明:在开花和果实成熟阶段,新疆郁金香植株分配给营养器官(鳞茎和地上营养器官)与繁殖器官的资源间均存在极显著的负相关关系(P<0.01),说明其植株的营养生长与生殖生长间存在权衡关系。多花是新疆郁金香的一个稳定性状,其植株上花数目、花生物量、果实生物量和种子数量与植株生物量间均呈极显著的正相关关系(P<0.01),说明新疆郁金香植株的繁殖分配存在大小依赖性。在具2-5朵花的新疆郁金香植株中,花序内各花的生物量、花粉数和胚珠数、结实率、果实生物量、结籽数、结籽率及种子百粒重按其开花顺序依次递减,说明花序内各花和果实的资源分配符合资源竞争假说。植株通过减少晚发育的花或果实获得的资源来保障早发育的花或果实获得较多的资源,从而达到繁殖成功。     

新一代测序技术在植物转录组研究中的应用

随着DNA测序技术的发展,新一代测序技术以其高通量、低成本的特点,成为越来越多的生物学研究者在开展工作时的首选。在所有的新一代测序技术中,454测序系统是最早实现商业化且发展相对成熟的一种,目前被广泛的应用于各个领域的生物学研究中。文章以454测序系统为例,综述了新一代测序系统的原理、优缺点,及其在植物转录组研究中的应用,并对其在植物研究领域中可能的发展应用方向进行了展望。     

植物生长发育中程序性细胞死亡

本文简要介绍了植物细胞凋亡的一些特点以及植物在营养生长和生殖生长过程中发生的细胞凋亡现象。指出细胞凋亡是植物生长发育过程中正常的生理现象。     

Advantages of sexual reproduction

Despite the obvious efficiencies of many forms of asexual reproduction, sexual reproduction abounds. Asexual species, for the most part, are relatively short-lived offshoots of sexual ancestors. From the nineteenth century, it has been recognized that, since there is no obvious advantage to the individuals involved, the advantages of sexual reproduction must be evolutionary. Furthermore, the advantage must be substantial; for example, producing males entails a two-fold cost, compared to dispensing with them and reproducing by parthenogenetic females. There are a large number of plausible hypotheses. To me the most convincing of these are two. The first hypothesis, and the oldest, is that sexual reproduction offers the opportunity to produce recombinant types that can make the population better able to keep up with changes in the environment. Although the subject of a great deal of work, and despite its great plausibility, the hypothesis has been very difficult to test by critical observations or experiments. Second, species with recombination can bunch harmful mutations together and eliminate several in a single “genetic death.” Asexual species, can eliminate them only in the same genotype in which they occurred. If the rate of occurrence of deleterious mutations is one or more per zygote, some mechanism for eliminating them efficiently must exist. A test of this mutation load hypothesis for sexual reproduction, then, is to find whether deleterious mutation rates in general are this high-as Drosophila data argue. Unfortunately, although molecular and evolutionary studies can give information on the total mutation rate, they cannot determine what fraction are deleterious. In addition, there are short discussions of the advantages of diploidy, anisogamy, and separate sexes. © 1994 Wiley-Liss, Inc.     

Patterns of sexual reproduction in diatoms

Sexual reproduction takes many forms within the diatoms. The variation has been classified by several authors, but in most cases the distinctions between their main categories have depended on the number of gametes produced per gametangium (and thus on how many zygotes per pair of copulating cells), and upon whether fusion is oogamous, anisogamous or isogamous. These classifications are not themselves an adequate basis for taxonomic comparison, which should be based on individual characteristics of the sexual process. Diatoms seem to be primitively oogamous. In araphid pennate diatoms and some raphid diatoms the gametes and gametangia are morphologically alike but physiologically distinct; one gametangium produces active gametes and the other passive ones. This may be the primitive condition in pennate diatoms, providing a link to the oogamy of centrics via the morphological anisogamy of Rhabdonema Kütz.     

菊科12种外来植物的有性繁殖特征和入侵风险研究

菊科植物具有极强的有性繁殖能力,对外来菊科观赏植物的引进存在极高的入侵风险。本研究以武汉常见的菊科12种外来观赏植物为对象,通过有性繁殖特征调查,研究植株的花部特征、花粉活力、传粉系统、种子产量,分析各物种有性繁殖能力的差异,评估其入侵能力。结果显示,多数物种可在隔绝传粉者情况下结实;访花昆虫类型多样,共观察到26种访花昆虫,其中膜翅目蜂类是主要的传粉者;结实情况具有一定差异。综合考虑花粉活力、传粉情况和结实情况,认为黑心金光菊(Rudbeckia hirta L.)、松果菊(Echinacea purpurea(L.)Moench)、大花金鸡菊(Coreopsis grandiflora Hogg.)、蛇目菊(Sanvitalia procumbens Lam.)的有性繁殖竞争力较高,对本地传粉环境可能有较大影响。本研究对近缘物种有性繁殖特征的综合分析结果可为评估外来物种的入侵风险提供一定的参考。     

阴地蕨全转录组分析及植物激素信号转导相关基因筛选

该研究以新鲜阴地蕨全株为材料,用Illumina HiSeq 2500平台进行全转录组测序,干净序列经组装后得单一基因(Unigene),将Unigene在非冗余蛋白/核酸数据库(nonredundant protein database,NR)、核酸序列数据库(nucleotide sequence database,NT)、基因本体论数据库(gene ontology,GO)、蛋白质真核同源数据库(clusters of eukaryotic orthologous groups,COG)、京都基因与基因组百科全书(Kyoto encyclopedia of genes and genomes,KEGG)、蛋白质序列数据库SwissProt和Interpro进行生物信息学分析。结果表明:共获得干净序列6.67 Gb,组装后得到58 646个Unigene,平均长度为1 023 bp,Unigene在上述数据库的总体注释率为69.25%。其中,在GO数据库中,20 762个基因被注释到生物功能、细胞组分和分子功能3个本体的52个功能组,COG注释了20 633个基因并将其划分为25个...     

Cell–cell communications and molecular mechanisms in plant sexual reproduction

Sexual reproduction is achieved by precise interactions between male and female reproductive organs. In plant fertilization, sperm cells are carried to ovules by pollen tubes. Signals from the pistil are involved in elongation and control of the direction of the pollen tube. Genetic, reverse genetic, and cell biological analyses using model plants have identified various factors related to the regulation of pollen tube growth and guidance. In this review, I summarize the mechanisms and molecules controlling pollen tube growth to the ovule, micropylar guidance, reception of the guidance signal in the pollen tube, rupture of the pollen tube to release sperm cells, and cessation of the tube guidance signal. I also briefly introduce various techniques used to analyze pollen tube guidance in vitro.     

Trade-offs between sexual and clonal reproduction in an aquatic plant: experimental manipulations vs. phenotypic correlations

That trade-offs result from the allocation of limited resources is a central concept of life history evolution. We quantified trade-offs between sexual and clonal reproduction in the aquatic plant, Butomus umbellatus, by experimentally manipulating sexual investment in two distinct nutrient environments. Increasing seed production caused a significant but nonlinear trade-off. Pollinating half of all flowers strongly reduced clonal bulbil production, but pollinating the remaining flowers did not cause any further trade-off. Trade-offs were not stronger under low nutrient conditions that clearly limited plant growth. Experimentally induced trade-offs were not reflected in negative phenotypic correlations between sexual and clonal allocation among plants within eight populations grown in a uniform greenhouse environment. Diminishing effects of increased sexual allocation plus a lack of accord between experimental manipulations and phenotypic correlations suggest that trade-offs between sexual and clonal reproduction are unlikely to constrain the evolution of reproductive strategy in this species.     

The balance between sexual and asexual reproduction in plants living in variable environments

The balance between sexual and asexual propagule production is studied in an evolutionary model where plants produce the two kinds of propagules in genetically determined proportions. The male function of plants producing asexual propagules can be varied, and the sexual and asexual propagules carry different probabilities to turn into new reproductive individuals. These fitnesses may vary over years. The evolution of the population’s reproductive system is studied assuming modifier alleles with small effects. In this setting a balanced, mixed reproductive system can evolve, but only if the difference in fitness between the sexual and asexual propagules varies over years. When the two kinds of propagules are very similar to each other, as is often the case with sexual and asexual seed formation, evolution will tend towards a state dominated by the one or the other reproductive system.     

The biological characteristics of the canine adenovirus type 1 from fox and the transcriptome analysis of the infected MDCK cell

Canine adenovirus type 1 (CAdV-1) is the etiologic agent of fox encephalitis, and a virus strain from fox encephalitis is isolated and related research are conducted. In this experiment, the results showed that the F1301 strain was confirmed to be the CAdV-1. The whole genome of the CAdV-1 F1301 strain isolated from fox was 30,535 bp and had higher homology to the other reported CAdV-1 strains. After 0, 12, and 36 h of CAdV-1 infection, the difference gene of the 592 long noncoding RNA and 11,215 microRNA were involved in cell responses to CAdV-1 infection through the PI3K-AKT, Wnt, Herpes simplex, hepatitis C, and Epstein–Barr virus infection pathway in Madin–Darby canine kidney cell line (MDCK). The results indicate that the biological characterization of the CAdV-1 and the MDCK cell-CAdV-1 interaction are clarified.