Purification and properties of cytochrome c and two peroxidases from spinach leaves

1. A simultaneous purification procedure of cytochrome c, peroxidases,ferredoxin, ferredoxin-NADP reductase and sulfite reductasefrom spinach leaves is described. Cytochrome c, ferredoxin andferredoxin-NADP reductase were prepared in crystalline states.The two peroxidases were obtained in homogeneous states as evidencedby their electrophoretic patterns on acrylamide gel and sedimentationanalysis. 2. Crystalline cytochrome c showed a molecular weight of 13,800and an E₀' of 270 mv at pH 7.0. In addition to these properties,its spectral pattern also indicated that this cytochrome c wasderived from mitochondria. 3. Two peroxidases were isolated in high spin forms after treatmentwith HgCl₂. They had a-peaks at 556 mµ in their reducedforms. Although both peroxidases showed small differences inchromatographic behavior on a carboxymethyl cellulose column,' they had similar spectral properties, dissociation constantsof peroxidase-cyanide complex and rate constants for peroxidasereactions. (Received December 24, 1970; )     

Cytochrome c mRNA in skeletal muscles of immobilized limbs

Booth, Frank W., Wei Lou, Marc T. Hamilton, and Zhen Yan.Cytochrome c mRNA in skeletalmuscles of immobilized limbs. J. Appl.Physiol. 81(5): 1941-1945, 1996.Even thoughimmobilization of a slow skeletal muscle in a lengthened positionprevents muscle atrophy, it is unknown whether this treatment wouldprevent a decrease in mitochondrial quantity. We found that, regardless of muscle length in immobilized limbs, the mRNA of a marker for mitochondrial quantity, cytochrome c,decreased. Cytochrome c mRNA permilligram of muscle was 62 and 72% less 1 wk after fixation of thesoleus muscle in shortened and lengthened positions, respectively, thanage-matched controls. Cytochrome cmRNA per milligram wet weight was 36 and 32% less in the tibialisanterior muscle fixed for 1 wk in the shortened and lengthenedpositions, respectively, compared with age-matched controls. Recently,in the 3-untranslated region of cytochromec mRNA a novel RNA-protein interactionthat decreases in chronically stimulated rat skeletal musclewas identified.[Z. Yan, S. Salmons, Y. L. Dang, M. T. Hamilton, and F. W. Booth. Am. J. Physiol. 271 (CellPhysiol. 40): C1157- C1166,1996]. The RNA-protein interaction inthe 3-untranslated region of cytochrome c mRNA in soleus and tibialis anteriormuscles was unaffected by fixation in either shortened or lengthenedposition. We conclude that, whereas lengthening muscle during limbfixation abates the loss of total muscle protein, the percentagedecrease in cytochrome c mRNA isproportionally greater than total protein. This suggests that thedesign of countermeasures to muscle atrophy should include differentexercises to maintain total protein and mitochondria.

     

Intracellular pH shifts in cultured kidney (A6) cells: effects on apical Na+ transport

We report, for the epithelialNa⁺ channel (ENaC) in A6 cells,the modulation by cell pH (pH_c)of the transepithelial Na⁺ current(I_Na), thecurrent through the individual Na⁺channel (i), the openNa⁺ channel density(N_o), and thekinetic parameters of the relationship betweenI_Na and theapical Na⁺ concentration. Thei andN_o were evaluatedfrom the Lorentzian I_Na noise inducedby the apical Na⁺ channel blocker6-chloro-3,5-diaminopyrazine-2-carboxamide.pH_c shifts were induced, understrict and volume-controlled experimental conditions, byapical/basolateral NH₄Cl pulses orbasolateral arrest of theNa⁺/H⁺exchanger (Na⁺ removal; block byethylisopropylamiloride) and were measured with the pH-sensitive probe2',7'-bis(2-carboxyethyl)-5(6)-carboxyfluorescein. Thechanges in pH_c were positivelycorrelated to changes inI_Na and theapically dominated transepithelial conductance. The sole pH_c-sensitive parameter underlyingI_Na wasN_o. Only thesaturation value of theI_Na kinetics wassubject to changes in pH_c.pH_c-dependent changes inN_o may be causedby influencingP_o, the ENaC openprobability, or/and the total channel number,N_T = N_o/P_o.

     

Purification and Properties of Sweet Potato NADPH-Cytochrome c (P-450) Reductase

NADPH-cytochrome c reductase, strictly NADPH-cytochrome P-450reductase, was purified by chromatography through DEAE-cellulose,2',5'-ADP-Sepharose, and Sephadex G-100 columns after solubilizationfrom microsomes from Ceratocystis fimbriata-infected sweet potatoroot tissue with Emulgen 913. The enzyme existed in three formsafter solubilization which migrated to positions correspondingto molecular weights of 81,000, 75,000 and 72,000 on an SDS-polyacrylamidegel. Trypsin treatment of the enzyme species with the largestpolypeptide yielded the species with the smallest one. Aftersucrose density gradient centrifugation of the pellet fractionobtained by centrifugation at 100,000?g of the crude extract,the enzyme species with the largest polypeptide was presentin the particulate fractions, whereas that with the smallestone was only found at the top of the gradient. We conclude thatthe enzyme species with the largest polypeptide is in an intact,amphipathic form, whereas that with the smallest one, and probablyalso the other species, is its hydrophilic domain produced byan endogenous protease(s). The K_m values of the enzyme in theintact form for NADPH and cytochrome c were 7.7 and 2.3 µM,respectively. ¹ Present address: Laboratory of Food Hygienics, Faculty ofAgriculture, Kagawa University, Miki-cho, Kida-gun, Kagawa 761-07,Japan. (Received September 6, 1984; Accepted December 27, 1984)     

Functional and Structural Comparisons between Prokaryotic and Eukaryotic aa3-Type Cytochrome c Oxidases from an Evolutionary Point of View

The specificities for cytochrome c of the aa3-type cytochromec oxidase were studied with enzymes derived from Thiobacillusnovellas, Nitrobacter agilis, Paracoccus denitrificans and thecow in reaction with the cytochromes c from 5 prokaryotes and7 eukaryotes. The T. novellus enzyme reacted most rapidly withthe cytochromes c of Candida krusei, tuna and bonito as wellas T. novellus cytochrome c; the specificity for cytochromec of the N. agilis enzyme was similar to that of the T. novellusenzyme. The bovine enzyme reacted rapidly with all the eukaryoticcytochromes c tested. The P. denitrificans enzyme showed a specificitysimilar to that of the bovine enzyme, except that it reactedrapidly with P. denitrificans cytochrome c, while the bovineenzyme reacted with it very poorly. All four kinds of enzymesshowed an extremely limited reaction with Pseudomonas aeruginosacytochrome c. The amino acid composition of subunit I of the N. agilis enzymeresembled that of the bovine enzyme, while the compositionsof their subunits II were different. On the basis of these results,an evolutionary relationship between bacterial and eukaryoticenzymes was discussed. (Received May 21, 1981; Accepted August 20, 1981)     

Background context and decision making in hoarding gray jays

If decision makers assign stable fitness-related values to options, preference for the most valuable of simultaneously encounteredoptions should be independent of background context (i.e.,prior options). The tendency to choose optionx versus y shouldbe unaffected by whether the decision maker has already beengiven a choice betweenx' and y' or between x' and y'. Here, food-hoarding gray jays (Perisoreus canadensis) were given aninitial choice between x' (one raisin, 0.5 m into a tube) and y' (three raisins, 0.5 m) or between x' and y' (both identicalto x'). All subjects were then given a choice between x' (oneraisin, 0.3 m) and y' (three raisins, 0.7 m). In violationof the principle of irrelevant alternatives, the "market share"ofx depended on prior options. Subjects initially exposed tocontext {x', y'} showed a stronger preference for x than did subjects initially exposed to {x', y'}, which implies thatthe jays did not assign a fixed value to each option. Subjectsthat initially could obtain a large reward (y') for about thesame "price" (perceived danger) as a small reward (x') apparentlydevalued the large reward (y) in the subsequent choice. Thiseffect may be the joint byproduct of cognitive constraints andan adaptive tendency to use information provided by the context.     

NADH-Linked Ferricyanide and Cytochrome c Reduction Activities in Corn Root Plasma Membrane

Corn root plasma membrane catalyzed NADH reduction of ferricyanideand cytochrome c over a wide pH range. At pH 7.5, apparent K_msof NADH-cytochrome c pair were significantly lower than thoseof NADH-ferricyanide pair. FMN and polylysine respectively enhancedthe reduction of ferricyanide and cytochrome c. Yet, polyaspartatedecreased the ferricyanide reduction. NADH oxidation observedin the presence of both ferricyanide and cytochrome c was significantlyslower than the sum of rates obtained with individual acceptors.The results suggest that the membrane may contain differentbut not totally independent reduction sites for cytochrome cand ferricyanide. (Received April 13, 1993; Accepted August 23, 1993)     

Degradation of Chitotetraose to Chitobiose in the Axenic Rape Rhizosphere

In the presence of intact roots of 2-week-old axenic rape seedlings,added N, N', N', N'-tetraacetylchitotetraose was degradedto N, N'-diacetylchitobiose during 48 h of incubation. Onlyminute amounts of monomer (N-acetyglucosamine) were formed fromadded chitotetraose or chitobiose. The addition of a purifiedchitin suspension caused no measurable formation of degradationproducts. The formation of chitobiose from added chitotetraose was linear,suggesting the action of a constitutive enzyme during the incubationperiod. Key words: Brassica napus (L.) cv. Brink, rhizosphere, N, N'-diacetylchitobiose, N,N',N',N', tetraacetylchitotetraose     

STUDIES ON COMPONENTS OF RESPIRATORY SYSTEM OF BEGONIA LEAVES

Investigations were made of the properties of diaphorase, cytochromec reductases, cytochrome c oxidase, and other components ofelectron transfer system in various fractions of leaf homogenateof Begonia semperflorens.

1. All the fractions tested showed the existence of cytochromec oxidase, succinic- and reduced diphosphopyridine nucleotide-cytochromec reductases, and diaphorase. Activities of these enzymes werefound to be associated mainly with the particulate fractions.The particulate fractions showed, in particular, a capacityof reducing oxidized cytochrome c with fumarate, malate, -ketoglutarate,ß-hydroxy-butyrate, and citrate.
2. Optimum pH foroxidation of cytochrome c by the particulatefractions was foundto be 5.5, while that for reduction was7.2.
3. The activityof cytochrome c reductase was partially suppressedby malonate.Partial inhibition of cytochrome c oxidase wascaused by azideand cyanide, the inhibitory effects observedbeing strongerwith particulate fractions than with solublefractions.

(Received August 11, 1962; )     

Nitrobacter agilis Cytochrome c-550: Isolation, Physicochemical and Enzymatic Properties, and Primary Structure

Nitrobacter agilis cytochrome c-550 was purified to an electrophoreticallyhomogeneous state, and some of its properties were determined.The cytochrome showed an absorption peak at 410 nm in the oxidizedform, and peaks at 416, 521 and 550 nm in the reduced form.Its isoelectric point was 8.1 at 5?C. Analysis of the aminoacid composition showed that the cytochrome molecule was composedof 108 amino acid residues, 16 of which were lysine residues. The cytochrome reacted rapidly with N. agilis cytochrome c oxidaseand yeast cytochrome c peroxidase and more slowly with Pseudomonasaeruginosa nitrite reductase and bovine cytochrome c oxidase.The reactivities with these redox enzymes suggested that thecytochrome might be an evolutionary stage between bacterialand eukaryotic cytochromes c. The primary structure of the cytochrome from the N-terminusto the 85th residue was determined. The N-terminal sequencewas homologous to the corresponding portion of the primary structureof horse cytochrome c. ¹ Present adress: Department of Chemistry, Faculty of Science,Tokyo Institute of Technology, O-okayama, Meguro-ku, Tokyo,152, Japan. (Received December 3, 1981; Accepted January 28, 1982)     

Energetic constraints and foraging efficiency

Previous research considers foraging options that differ interms of their gross rate of gain b and rate of energy expenditurec. This research argues that maximizing efficiency b/c willmaximize net energetic gain when there is an upper limit onthe amount of energy that can be assimilated. This analysisdoes not include the expenditure during the time for which theanimal is unable to forage because of this constraint. Whenthis expenditure is included, maximizing efficiency is no longeroptimal. Instead the best feeding option is the one with thehighest value of b/(c – c₁), where c, is the metabolicrate when the animal is not foraging.     

STUDIES ON LACTATE CYTOCHROME C REDUCTASES OF YEAST WITH SPECIAL REFERENCE TO ELECTROPHORESIS ON POLYACRYLAMIDE GEL

1. Two lactate dehydrogenases, L(+)- and D(–)- lactate cytochromec reductase, were extracted from the baker's yeast after disintegrationof the cells by a FRENCH press. They are separated by electrophoresison polyacrylamide gel and their activities were compared bycolor density of formazan, the reduction product of nitrobluetetrazolium.
2. The ratio of L-lactate cytochrome c reductaseactivity to D-lactatecytochrome c reductase activity variedto a great extent, dependingon culture conditions. L-Lactatecytochrome c reductase waspredominant in resting cells; thereverse was the case withcells in early exponential stage ofthe growth.
3. When the cells in exponential stage of growthwere aerated withoutnitrogen source, there occurred an intensiveincrease of L-lactatecytochrome c reductase, accompanied bythe decrease of D-lactatecytochrome c reductase.
4. Effectsof inhibitors on the activity ratio of these two enzymeswereinvestigated. o-Phenanthroline, dinitrophenol, sodium azide,chloramphenicol, British antilewisite and antimycin A favored,in this order, the formation of L-lactate cytochrome c reductase.

(Received August 18, 1966; )     

Cytochromes in the Cultured Mycobiont of a Lichen, Cladonia vulcani Sav

Cytochromes in a cultured cells of the mycobiont of Cladoniavulcani Sav. were studied, b-and c-type cytochromes and aa₃-typecytochrome c oxidase were found in the membrane fraction, whileb- and c-type cytochromes were found in the soluble fraction.Soluble cytochrome c-549.5 was purified, and some of its molecularproperties were determined. (Received June 27, 1994; Accepted October 3, 1994)     

COMPONENTS OF THE ELECTRON-TRANSFERRING SYSTEM IN ACETOBACTER SUBOXYDANS AND RECONSTRUCTION OF THE LACTATE OXIDATION SYSTEM

1. Cytochromes a₁⁵⁹⁰, b⁵⁶⁰, c₁⁵⁵⁴ and c₁⁵⁵² were isolated andpurifiedfrom a strain of Acetobacter suboxydans. The proceduresusedwere described in detail.
2. The main cytochrome band at550-560 mµ in intact cellssplitted at liquid air temperatureinto two bands, 551 mµ(strong) and 559 mµ (weak).
3. Optical and physiological properties of the four cytochromeswere investigated. Lactic dehydrogenase activity was found tobe associated with cytochrome c₁⁵⁵⁴. The two c₁-type cytochromes,especially cytochrome c₁⁵⁵⁴, persisted in their reduced formafter the purification through many steps.
4. By some combinationsof isolated components reconstruction ofthe oxygen uptake systemcould be realized.
5. The oxygen-consuming activity of purifiedoxidase preparationswas accelerated by a-tocopherol but notby Emasoll 4130 andTween 80.
6. Some discussions were made onthe nature of terminal oxidase,the role of cytochrome c₁⁵⁵²in the electron-transport system,and persistence of reducedstate of c₁-type cytochromes.
7. A possible scheme of the electron-transferringsystem of Acetobactersuboxydans was presented.

(Received May 16, 1960; )     

Effects of the new plant growth retardants of quaternary ammonium iodides on gibberellin biosynthesis in Gibberella fujikuroi

The effects of twelve quaternary ammonium iodides, synthesizedas plant growth relardants, on the biosynthesis of gibberellinsin the culture of Gibberella fujikuroi were investigated. Ofthe two compounds with the strongest growth-retarding activity,N,N,N-trimethyl-1-methyl-(3',3',5'-trimethylcydohexyl)-2-propenylammonium iodide (1) was found to inhibit the biosynthesis, whileN,N,N-trimethyl-l-methyl-(3',3',5'5'- tetramethylcyclohexyl)-2-propenylammonium iodide (2) was not. The results on examination of thetwelve analogues indicate that their plant growth-retardingactivity is not related to the inhibition of gibberellin biosynthesis. (Received July 18, 1978; )     

Scanning electron microscopy of Heterocapsa pygmaea sp. nov., and evidence for polyploidy as a speciation mechanism in dinoflagellates

The thecal morphology of three isolates of the marine dinoflagellateHeterocapsa pygmaea sp. nov. are here examined by manning electronand light microscopy. The thecal tabulation of these isolatesis p.p., c.p., 5', 3a, 7', 6c, a.s., r.s., l.a.s., l.p.s.,[?a.a.s. and p.a.s.], 5' ' and 2' ' and is identical to thatof H. niei and H. illdefina. The assignment of thecal platesto various series is based on interpretation of plate homologiesamong peridinioid genera. The above formula represents the basicpattern for Heterocapsa. The cell dimensions of four Heterocapsaspecies are determined; Heterocapsa pygmaea is the smallestspecies. Heterocapsa pygmaea differs from the next largest species,H. niei, in having approximately half the number of chromosomesand as such can be interpreted as a case of polyploidy. If so,this is the first evidence of polyploidy as a speciation mechanismin the Pyrrhophyta. ¹Present address: Department of Botany, Duke University, DurhamNorth Carolina 27706 ²Present address: The Biological Laboratories, Harvard University,Cambridge, Massachusetts 02138     

Properties of the Cytochrome c Oxidase Activity of Cytochrome b561 from Photoanaerobically Grown Rhodopseudomonas sphaeroides

Cytochrome b₅₆₁ from Rhodopseudomonas sphaeroides had cytochromec (c2) oxidase activity and a pH optimum at 6.0 for this activity.The activity was affected by the ionic strength of the reactionmixture. The apparent K_m and maximal velocity (V_max) valuesin the absence of addea salts were 14 µM and 120 nmoloxidized per min per mg protein for horse heart cytochrome c.Reduced horse heart cytochrome c was reoxidized in first-orderkinetics by this cytochrome b₅₆₁. The specific activity was0.7 s^–1 per mg protein at 20°C at the concentrationof 30 µMM cytochrome c. Activity was inhibited by KCN and NaN₃, but not by antimycin.The addition of a low concentration of KCN to the cytochromeb₅₆₁ produced a change in the absorption spectrum, evidencethat KCN interacts with the heme moiety of cytochrome b₅₆₁.Results of this and preceeding studies show that the cytochromeoxidase (cytochrome "o") described earlier (Sasaki et al. 1970)is cytochrome b₅₆₁. (Received May 16, 1983; Accepted September 8, 1983)     

Dual roles of ubiquinone as primary and secondary electron acceptors in light-induced electron transfer in chromatophores of Chromatium D.

The effects of isooctane-extraction on the quantum yield ofphotooxidation of cytochromes in chromatophores of Chromatiumvinosum, strain D, were investigated. The initial rate of photooxidation of cytochrome c-555 in theisooctane-extracted chromatophores was decreased by repeatedor prolonged preillumination in the presence of 30 mM ascorbate.The minimum number of light quanta absorbed during preilluminationto cause the maximum decrease in the photooxidation of cytochromec-555 was about 2% of the number of bacteriochlorophyll moleculespresent. In the absence of ascorbate no lowering of the initial rateof cytochrome photooxidation was observed after prolonged orrepeated illumination. No decrease in the initial rate due topreillumination was observed in lyophilized or ubiquinone-readdedchromatophores. The initial rate of photooxidation of both the cytochromes c-555and c-552 in partially isooctane-extracted chromatophores (50–90%extraction of ubiquinone) was also decreased by repeated orprolonged illumination in the presence of 30 mM ascorbate. Our previous and present studies indicate that about 10% ofthe total ubiquinone- 7 functions as the primary electron acceptorfor the photooxidation of cytochrome c-552, and that the majorpart of the ubiquinone functions as the common secondary electronacceptor for the photooxidation of cytochromes c-555 and c-552in Chromalium chromatophores. Therefore, ubiquinone probablyhas dual roles in the light-induced electron transfer of Chromatiumchromatophores. (Received July 23, 1975; )     

Electrotonic Transmission of an Action Potential between Two Separated Internodal Cells of Chara through a Bridge

Two separated internodal cells of Chara braunii were broughtinto contact with each other longitudinally at their ends andconnected by another pathway composed of a metal bridge beyondthe region of intercellular contact. A conducted action potentialthat arrived at one foot of the bridge electrotonically depolarizedthe other foot of the bridge in the connected cell. The electriccoupling ratio (0.07?0.03), the ratio of the change in the membranepotential of one cell to that of the other cell, was too smallto allow transmission of an action potential. Two cells wereplaced in parallel and connected with two liquid bridges orpools, a' and b'. When the action potential of one cell wasconducted through one connecting pool (pool a)', the other cellwas depolarized electrotonically by the action current via theother connecting pool (pool b'). The coupling ratio was increasedto 0.26?0.07 by the solution bridge, but transmission of theaction potential was rarely observed. Application of 1 mM KC1to pools a' and/or b' slightly improved the frequency of transmissionof the action potential. When pool b' contained 5% urethane,the coupling ratio increased to 0.31?0.08 and transmission ofthe action potential was frequent. (Received August 24, 1989; Accepted March 14, 1990)     

Effects of cytochrome c on the mitochondrial apoptosis-induced channel MAC

Recent studies indicate that cytochrome c is released early in apoptosis without loss of integrity of the mitochondrial outer membrane in some cell types. The high-conductance mitochondrial apoptosis-induced channel (MAC) forms in the outer membrane early in apoptosis of FL5.12 cells. Physiological (micromolar) levels of cytochrome c alter MAC activity, and these effects are referred to as types 1 and 2. Type 1 effects are consistent with a partitioning of cytochrome c into the pore of MAC and include a modest decrease in conductance that is dose and voltage dependent, reversible, and has an increase in noise. Type 2 effects may correspond to "plugging" of the pore or destabilization of the open state. Type 2 effects are a dose-dependent, voltage-independent, and irreversible decrease in conductance. MAC is a heterogeneous channel with variable conductance. Cytochrome c affects MAC in a pore size-dependent manner, with maximal effects of cytochrome c on MAC with conductance of 1.9–5.4 nS. The effects of cytochrome c, RNase A, and high salt on MAC indicate that size, rather than charge, is crucial. The effects of dextran molecules of various sizes indicate that the pore diameter of MAC is slightly larger than that of 17-kDa dextran, which should be sufficient to allow the passage of 12-kDa cytochrome c. These findings are consistent with the notion that MAC is the pore through which cytochrome c is released from mitochondria during apoptosis. patch clamp; ion channels