Helicobacter pylori downregulates expression of human β‐defensin 1 in the gastric mucosa in a type IV secretion‐dependent fashion

Helicobacter pylori establishes a chronic lifelong infection in the human gastric mucosa, which may lead to peptic ulcer disease or gastric adenocarcinoma. The human beta‐defensins (hβDs) are antimicrobial peptides, hβD1 being constitutively expressed in the human stomach. We hypothesized that H. pylori may persist, in part, by downregulating gastric hβD1 expression. We measured hβD1 and hβD2 expression in vivo in relation to the presence, density and severity of H. pylori infection, investigated differential effects of H. pylori virulence factors, and studied underlying signalling mechanisms in vitro. Significantly lower hβD1 and higher hβD2 mRNA and protein concentrations were present in gastric biopsies from infected patients. Those patients with higher‐level bacterial colonization and inflammation had significantly lower hβD1 expression, but there were no differences in hβD2. H. pylori infection of human gastric epithelial cell lines also downregulated hβD1. Using wild‐type strains and isogenic mutants, we showed that a functionalcag pathogenicity island‐encoded type IV secretion system induced this downregulation. Treatment with chemical inhibitors or siRNA revealed that H. pylori usurped NF‐κB signalling to modulate hβD1 expression. These data indicate that H. pylori downregulates hβD1 expression via NF‐κB signalling, and suggest that this may promote bacterial survival and persistence in the gastric niche.     

Decreased expression of ATP6V1H in type 2 diabetes: a pilot report on the diabetes risk study in Mexican Americans

Objective

Previous studies in mice and humans observed down-regulation of the gene expression of ATP6V1H associated with type 2 diabetes. This study identified prospectively changes in ATP6V1H expression before and after overt diabetes.

Methods

Expression of ATP6V1H in peripheral blood was compared pre and post development of diabetes in nine individuals.

Results

Considerable variation of ATP6V1H mRNA levels was observed between different individuals. However, within each individual the decrease in expression of ATP6V1H with the development of diabetes was highly statistically significant.

Conclusions

ATP6V1H may represent a critical molecular mechanism involved in the development of type 2 diabetes and its compilations through its important regulatory effect on vacuolar-ATPase activity.     

CRISPR/Cas9-mediated simultaneous mutation of three salicylic acid 5-hydroxylase (OsS5H) genes confers broad-spectrum disease resistance in rice

Salicylic acid (SA) is an essential plant hormone that plays critical roles in basal defence and amplification of local immune responses and establishes resistance against various pathogens. However, the comprehensive knowledge of the salicylic acid 5-hydroxylase (S5H) in rice-pathogen interaction is still elusive. Here, we reported that three OsS5H homologues displayed salicylic acid 5-hydroxylase activity, converting SA into 2,5-dihydroxybenzoic acid (2,5-DHBA). OsS5H1, OsS5H2, and OsS5H3 were preferentially expressed in rice leaves at heading stage and responded quickly to exogenous SA treatment. We found that bacterial pathogen Xanthomonas oryzae pv. oryzae (Xoo) strongly induced the expression of OsS5H1, OsS5H2, and OsS5H3. Rice plants overexpressing OsS5H1, OsS5H2, and OsS5H3 showed significantly decreased SA contents and increased 2,5-DHBA levels, and were more susceptible to bacterial blight and rice blast. A simple single guide RNA (sgRNA) was designed to create oss5h1oss5h2oss5h3 triple mutants through CRISPR/Cas9-mediated gene mutagenesis. The oss5h1oss5h2oss5h3 exhibited stronger resistance to Xoo than single oss5h mutants. And oss5h1oss5h2oss5h3 plants displayed enhanced rice blast resistance. The conferred pathogen resistance in oss5h1oss5h2oss5h3 was attributed to the significantly upregulation of OsWRKY45 and pathogenesis-related (PR) genes. Besides, flg22-induced reactive oxygen species (ROS) burst was enhanced in oss5h1oss5h2oss5h3. Collectively, our study provides a fast and effective approach to generate rice varieties with broad-spectrum disease resistance through OsS5H gene editing.     

Control of sporulation in yeast: SAD1-a mating-type specific, unstable alteration that uncouples sporulation from mating-type control

Summary Normally, in order to sporulate, a diploid yeast cell must be heterozygous (MAT a/MAT) at the mating-type locus. In a new mutant, this requirement is circumvented by SAD1. This alteration is mating-type specific; it allows sporulation of MAT/ MAT. MAT/mat a-1, and MAT/mat-2 diploid cells, but not MAT a/MAT a or MAT a/0 (monosomic) strains. Other than acquiring the ability to sporulate, SAD1 cells behave as wild-type MAT/MAT strains; they exhibit medial budding, normal mating factor production and response and mate with normal mating efficiencies and kinetics. The segregation of SAD1 is often bizarre; for example, MAT/MAT strains which were constructed to be heterozygous SAD1/+ often segregate 4 SAD1:0+progeny and strains which were constructed to be homozygous SAD1/ SAD1 sometimes segregated 1 SAD1:3+progeny. The genetic analyses of SAD1 suggest that it is dominant and is located 30 cM from MAT on chromosome III.     

Formal properties of the circadian system underlying photoperiodic time-measurement in Japanese quail

Summary The photosensitive phase for the photoperiodic response of Japanese quail was delineated with 3 h main photoperiods and 0.25 h night breaks in cycles (T) of 24 and 27 h. UnderT24 there was one peak of induction of testicular growth and luteinizing hormone release, while underT27 there were two, the first of which had a phase angle which was about 1.5 h more positive than that of the peak inT24. In contrast, the phase angle of locomotor activity underT27 was 3–4 h more positive than underT24. During entrainment to 1 h photoperiods in cycles between 19.1 and 25.7 h in length the rate of testicular growth (k) remained close to zero even though the subjective night of the activity rhythm was illuminated in some treatments. The ratek also remained close to zero when quail were exposed to 3 h photoperiods in cycles between 21 and 36 h in length, and underT30 the critical daylength for photoperiodic induction was only 1.5 h shorter than that underT24. The results suggest that asT is altered the changes in the phase angle of the photoinducible phase are smaller than those of the rhythm of locomotor activity, indicating the involvement of oscillators with different entrainment properties. This hypothesis is neither supported nor excluded by consideration of the internal coincidence model.     

Effect of phytoalexins on hyphal growth and β-glucanases of Phytophthora infestans

Phytophthora infestans excretes an endo--1,3-, an endo--1,4-, and a-1,3-glucanase (laminarinase), a-1,6-glucosidase and possibly small amounts of a-1,4-glucosidase. Ether extracts from the infected resistant cultivar Eba but not from the susceptible Bintje inhibited growth of the parasite. Solavetivone and rishitin, two phytoalexins, and the steroid glycoalkaloid tomatine inhibited growth of the fungus and also activities of some of the fungal glucanases, whereas phytuberin, another phytoalexin, and the two phenolic compounds scopoletin and chlorogenic acid inhibited neither fungal growth nor fungal glucanases. The phytoalexin lubimin strongly reduced fungal growth but did not reduce the activities of any of the fungal glucanases tested. A potential role for host derived fungal glucanase inhibitors as factors of resistance in thePhytophthora-potato system is discussed.     

In vitro assay of the antimicrobial activity of kephir against bacterial and fungal strains

Kephir is a fermented carbonated refreshing milk, with a slightly acidic aromatic taste and creamy foam composition which contains lactobacilli, leuconostocci, acetic acid bacteria, lactostreptococci and yeasts. Recent studies have demonstrated its antibacterial, immunostimulating, antitumoral and cholesterol-lowering activities.

Purpose

The purpose of this study was to investigate the antimicrobial activity of kephir against Bacillus subtilis spp. spizizenii ATCC 6633, Staphylococcus aureus ATCC 6538, Enterococcus faecalis ATCC 29212, Escherichia coli ATCC 8739, Salmonella enteritidis ATCC 13076, Pseudomonas aeruginosa ATCC 9027 and Candida albicans ATCC 10231. The kephir fermented for 24 h and 48 h, as well and after 7 days preservation at 4–8 °C was tested by in vitro disk diffusion method. The intensity of the antimicrobial activity was interpreted by comparison with two antibiotics, i.e. ampicillin and neomycin.

Results

The antimicrobial activity of 24 h as well as 48 fermented kephir, fresh or after 7 days preservation at 4–8 °C was similar and observed against B. subtilis, S. aureus, E. coli, E. faecalis and S. enteritidis. For E. coli, E. faecalis and S. enteritidis the antimicrobial activity was superior to both tested antibiotics and for B. subtilis and S. aureus to one antibiotic. The tested products exhibited no activity against P. aeruginosa and C. albicans.

Conclusion

Kephir is exhibiting large spectrum and strong antibacterial activity probably due to the complex viable probiotic strains association producing antimicrobial substances.     

Temporal analysis of 16 STR loci in human blood drawn from two culicid mosquitoes cultured at different temperatures

Female mosquitoes feed on human blood, which can be collected to analyze human short tandem repeat (STR) sequences; these are specific to each human individual. Analysis of STRs might help in identification of a person found near a crime scene. Aedes aegypti and Culex pipiens mosquitoes fed on human blood were cultured at 18°C or 40°C (median temperature for summer and winter time in Riyadh governorate, Saudi Arabia) for 3, 6, 12, 24, 48 and 72 h. In A. aegypti, human DNA concentration was reduced with time at both temperatures. At 18°C, we obtained full STR profiles up to 48 h post feeding on human blood while none of the 16 loci were obtained at 72 h. At 40°C, we missed six sites at 12 h after blood sucking, 12 at 24 h, and 15 at 48 h and 72 h. In C. pipiens cultured at 18°C, full profiles were developed up to 48 h following blood feeding while we could not amplify five sites at 72 h. At 40°C, mortality among females was 50% at 24 h and 100% at both 48 h and 72 h; however, we had full profiles in all samples including dead insects. This research addressed the possibility of using mosquitoes in forensic research by DNA genotyping by changing the mosquito culturing temperature and mosquito genus. Our findings proved that different types of mosquito change the temporal pattern of STR analysis and showed that the mosquito culturing temperature affects the integrity of DNA for STR analysis.     

CIRCADIAN CHARACTERISTICS OF CORTICOSTERONE SECRETION IN REDBACKED VOLES (CLETHRIONOMYS GAPPERI)

To provide necessary background for study of stress response in redbacked voles (Clethrionomys gapperi), the circadian and ultradian rhythm in corticosterone release was characterized. Animals were maintained under a 16h light, 8h dark cycle. A total of 55 males and 46 females provided 101 independent blood samples over a 6-month span. Samples were obtained at 1h to 2h intervals during the light and at 2h intervals during the dark. Using edited data (5 values beyond the upper 95% limit were removed), a significant time effect was found by analysis of variance (ANOVA) for both sexes at P <. 001. The composite single cosine best describing the circadian waveform for each sex consisted of three components (24h, 12h, and 6h), each significant at P <. 05 (overall model P <. 001). The 24h mean (mesor) was about 60% higher in females than males (646 ng/mL vs. 412 ng/mL, P =. 01), with amplitudes of 429 and 298 ng/mL being proportional (66% vs. 72%) to the respective mesor. The predictable range of change within a 24h span (determined by the double amplitude of a 24h + 12h + 6h cosine model) was large: It was more than 1600 ng/mL for females and more than 900 ng/mL for males. Highest values were found during the dark phase, with the 24h acrophase located at 2h into the dark span for both sexes. With the caveat of fewer samples obtained during dark than during light, the actual peak values for females occurred at 2h and for males at 6h into the 8h dark span. These results provide baseline information about the circadian time structure for serum corticosterone in red-backed voles under normal light-dark, lowstress conditions. (Chronobiology International 18(6) 933–945, 2001)     

Characterization of two class II chitinase genes from peanut and expression studies in transgenic tobacco plants

Two different genes encoding class II chitinases from peanut (Arachis hypogaea L. cv. NC4), A.h.Chi2;1 and A.h.Chi2;2, have been cloned. In peanut cell suspension cultures, mRNA levels of A.h.Chi2;2 increased after ethylene or salicylate treatment and in the presence of conidia from Botrytis cinerea. The second gene, A.h.Chi2;1, was only expressed after treatment with the fungal spores. Transgenic tobacco plants containing the complete peanut A.h.Chi2;1 gene exhibited essentially the same expression pattern in leaves as observed in peanut cell cultures. Expression characteristics of transgenic tobacco carrying a promoter-GUS fusion of A.h.Chi2;1 are described.     

The clubroot pathogen Plasmodiophora brassicae: A profile update

Background

Plasmodiophora brassicae is the causal agent of clubroot disease of cruciferous plants and one of the biggest threats to the rapeseed (Brassica napus) and brassica vegetable industry worldwide.

Disease symptoms

In the advanced stages of clubroot disease wilting, stunting, yellowing, and redness are visible in the shoots. However, the typical symptoms of the disease are the presence of club-shaped galls in the roots of susceptible hosts that block the absorption of water and nutrients.

Host range

Members of the family Brassicaceae are the primary host of the pathogen, although some members of the family, such as Bunias orientalis, Coronopus squamatus, and Raphanus sativus, have been identified as being consistently resistant to P. brassicae isolates with variable virulence profile.

Taxonomy

Class: Phytomyxea; Order: Plasmodiophorales; Family: Plasmodiophoraceae; Genus: Plasmodiophora; Species: Plasmodiophora brassicae (Woronin, 1877).

Distribution

Clubroot disease is spread worldwide, with reports from all continents except Antarctica. To date, clubroot disease has been reported in more than 80 countries.

Pathotyping

Based on its virulence on different hosts, P. brassicae is classified into pathotypes or races. Five main pathotyping systems have been developed to understand the relationship between P. brassicae and its hosts. Nowadays, the Canadian clubroot differential is extensively used in Canada and has so far identified 36 different pathotypes based on the response of a set of 13 hosts.

Effectors and resistance

After the identification and characterization of the clubroot pathogen SABATH-type methyltransferase PbBSMT, several other effectors have been characterized. However, no avirulence gene is known, hindering the functional characterization of the five intercellular nucleotide-binding (NB) site leucine-rich-repeat (LRR) receptors (NLRs) clubroot resistance genes validated to date.

Important Link

Canola Council of Canada is constantly updating information about clubroot and P. brassicae as part of their Canola Encyclopedia: https://www.canolacouncil.org/canola-encyclopedia/diseases/clubroot/ .

Phytosanitary categorization

PLADBR: EPPO A2 list; Annex designation 9E.     

颈盲蝽取食对薇甘菊叶片营养物质和防御酶的影响

【目的】薇甘菊是世界最具危害性的入侵杂草之一,对我国生态环境和农业、林业生产造成了严重的危害。颈盲蝽是控制薇甘菊的一种潜在的重要天敌昆虫。本研究旨在探讨薇甘菊被颈盲蝽取食后,叶片防御相关酶系活性、营养物质和叶绿素含量的变化,阐明颈盲蝽取食对薇甘菊生理功能的影响,为利用颈盲蝽防控薇甘菊提供依据。【方法】从云南瑞丽野外采集薇甘菊的本地天敌昆虫颈盲蝽,测定了颈盲蝽取食前及取食12、24、48、96 h后,薇甘菊叶片中过氧化物酶(POD)、过氧化氢酶(CAT)、超氧化物歧化酶(SOD)活性,以及可溶性糖、可溶性蛋白及叶绿素含量,以取食前的植株作为对照。【结果】与对照相比,颈盲蝽取食12 h时,薇甘菊叶片中的POD、CAT活性升高,SOD活性降低;之后POD、SOD活性上升,CAT活性降低,取食48 h时,POD和SOD活性达到最高值,CAT活性达到最低值;取食96 h时,POD与SOD活性降低,但仍高于对照,CAT活性与取食48 h时相近。颈盲蝽取食后,薇甘菊叶片中的可溶性糖含量明显上升,取食96 h达到最高值;可溶性蛋白和叶绿素含量显著降低,在96 h达到最低值,分别低于对照39.30%和69.94%。【结论】颈盲蝽取食严重破坏了薇甘菊叶片的正常生理功能,并最终导致其叶片萎蔫和坏疽。     

Analysis of CCR5 and CX3CR1 gene polymorphisms in association with unexplained recurrent miscarriages among north Indian women

Context

Recurrent miscarriage (RM), defined as three or more consecutive losses before the 20th week of gestation, affects 0.5–2% of pregnant women. In over 80% of cases, RM remains unexplained after investigations, suggesting the involvement of genetic factors.

Objectives

The present study investigates the common polymorphisms of chemokine receptors CCR5 (NG_012637.1:g.5303A>G) and CX₃CR1 (NG_016362.1:g.21065C>T, Thr280Met and NG_016362.1:g.20971G>A, Val249Ile) and their association with recurrent miscarriages (RM) among north Indian women.

Participants and Methods

In a retrospective case-control study 200 well characterized patients with unexplained RM and 300 controls were genotyped for three polymorphic markers of CCR5 and CX₃CR1 by restriction digestion of PCR amplified fragments.

Results

Alleles and genotypes of CX₃CR1 Val249Ile revealed statistically significant associations with RM cases when compared with the controls. The homozygous variant genotype Ile/Ile was found to be significantly higher among patients (p = 0.0002) when compared with the homozygous wild type Val/Val genotype. The haplotype of CX₃CR1 that carried major alleles of Thr280Met and Val249Ile (T-V) showed statistically significant protective association (p < 0.0001, OR = 0.41, 95% CI = 0.31–0.54). The haplotype A-T-V (all wild type alleles) revealed a statistically significant protective association (p < 0.0001, OR = 0.41, 95% CI = 0.34–0.62), whereas the haplotypes G-T-I, A-T-I and A-M-V modified the risk of RM 1.9-fold, 5.5-fold and 5.1-fold respectively.

Conclusions

A common polymorphism of CX₃CR1 gene, Val240Ile is associated with the risk of RM in north Indian women. Risk of RM may also be modified by the presence of haplotypes T-I, M-V, G-T-I, A-T-I and A-M-V.     

Endogenous activity rhythm in Talitrus saltator,Britorchestia brito (Crustacea,Amphipoda) and Tylos europaeus (Crustacea,Isopoda) from Barkoukech Beach (Tabarka,Tunisia)

The locomotor activity rhythm of three supralittoral crustacean species, Tylos europaeus (terrestrial isopod) and Britorchestia brito and Talitrus saltator (amphipod, Talitridea), was investigated in Barkoukech Beach. The rhythm was monitored in individual animals in spring under continuous darkness and constant temperature. Results revealed that whatever the species, actograms and mean activity curves showed that specimens of T. europaeus and T. saltator concentrated their activity during the subjective night; whereas, B. brito concentrated its activity during the subjective day. The three species exhibited a circadian locomotor rhythm with mean circadian period, respectively, equal to 24h41′ ± 0h44′, 24h46′ ± 0h55′ and 25h21′ ± 1h16′. The most stable locomotor rhythm was found in T. saltator (0.444 ± 0.246). Furthermore, individuals of T. europaeus were significantly more active (10h47′ ± 2h52′) than the two amphipods. Differences in the activity patterns of the three species will be discussed as an adaptative strategy to respond to interspecific competitive interactions.     

Isolation and characterization of Saccharomyces cerevisiae mutants supersensitive to G1 arrest by the mating hormone a-factor

Summary Nine independent mutants which are supersensitive (ssl ^–) to G1 arrest by the mating hormone a-factor were isolated by screening mutagenized Saccharomyces cerevisiae MAT cells on solid medium for increased growth inhibition with a-factor. These mutants carried lesions in two complementation groups, ssl1 and ssl2. Mutations at the ssl1 locus were mating type specific: MAT ssl1 ^– cells were supersensitive to -factor but MAT ssl1 ^– were not supersensitive to -factor. In contrast, mutations at the ssl2. locus conferred supersensitivity to the mating hormone of the opposite mating type on both MAT, and MATa cells. The -cell specific capacity to inactivate externally added a-factor was shown to be lacking in MAT ssl1 ^– mutants whereas MAT ssl2. cells were able to inactivate a-factor. Complementation analysis showed that ssl2 and sst2, a mutation originally isolated as conferring supersensitivity to -factor to MATa cells, are lesions in the same gene. The ssl1 gene was mapped 30.5 centi-Morgans distal to ilv5 on chromosome XII.     

Interspecific Hybridization of the Imported Bumblebee B. terrestris and the Korean Native Bumblebee Bombus hypocrita sapporoensis

The large bumblebee, Bombus terrestris, indigenous to Europe and adjacent area, and used extensively for high‐value crop pollination, has been artificially introduced to several parts of the world. Here we show the interspecific hybridization between the bumblebee species, B. hypocrita sapporoensis and B. terrestris, under laboratory conditions. The mating and oviposition percentages resulting from the interspecific hybridization of a B. terrestris queen with a B. h. sapporoensis male were higher than those resulting from the intraspecific mating of B. h. sapporoensis. Furthermore, a competitive copulation experiment indicated that the mating of B. h. sapporoensis males with B. terrestris queens was 1.2‐fold more frequent than the mating of these males with B. h. sapporoensis queens. The interspecific hybridization of a B. terrestris queen with a B. h. sapporoensis male produced either B. terrestris workers or the B. terrestris male phenotype, and the hybridization of a B. h. sapporoensis queen with a B. terrestris male produced B. h. sapporoensis males. Our results indicated that interspecific hybridization occurred between B. h. sapporoensis and B. terrestris. The results suggest that such hybridization will have a negative competitive impact and will cause genetic contamination of native bumblebees.     

Effects of forest degradation on microbial communities and soil carbon cycling: A global meta‐analysis

Aim

The aim was to explore how conversions of primary or secondary forests to plantations or agricultural systems influence soil microbial communities and soil carbon (C) cycling.

Location

Global.

Time period

1993–2017.

Major taxa studied

Soil microbes.

Methods

A meta‐analysis was conducted to examine effects of forest degradation on soil properties and microbial attributes related to microbial biomass, activity, community composition and diversity based on 408 cases from 119 studies in the world.

Results

Forest degradation decreased the ratios of K‐strategists to r‐strategists (i.e., ratios of fungi to bacteria, Acidobacteria to Proteobacteria, Actinobacteria to Bacteroidetes and Acidobacteria + Actinobacteria to Proteobacteria + Bacteroidetes). The response ratios (RRs) of the K‐strategist to r‐strategist ratios to forest degradation decreased and increased with increased RRs of soil pH and soil C to nitrogen ratio (C:N), respectively. Forest degradation increased the bacterial alpha‐diversity indexes, of which the RRs increased and decreased as the RRs of soil pH and soil C:N increased, respectively. The overall RRs across all the forest degradation types ranked as microbial C (?40.4%) > soil C (?33.3%) > microbial respiration (?18.9%) > microbial C to soil C ratio (qMBC; ?15.9%), leading to the RRs of microbial respiration rate per unit microbial C (qCO₂) and soil C decomposition rate (respiration rate per unit soil C), on average, increasing by +43.2 and +25.0%, respectively. Variances of the RRs of qMBC and qCO₂ were significantly explained by the soil C, soil C:N and mean annual precipitation.

Main conclusions

Forest degradation consistently shifted soil microbial community compositions from K‐strategist dominated to r‐strategist dominated, altered soil properties and stimulated microbial activity and soil C decomposition. These results are important for modelling the soil C cycling under projected global land‐use changes and provide supportive evidence for applying the macroecology theory on ecosystem succession and disturbance in soil microbial ecology.