代谢组研究的生物信息学方法

代谢组是细胞新陈代谢过程中小分子代谢物的集合。新陈代谢为细胞提供生理活动必需的物质和能量。代谢组直接反映细胞的新陈代谢过程,对代谢组的研究体现细胞的功能。细胞功能的异常会导致代谢组的异常,因此通过代谢组数据即可分析出细胞的健康状况。对代谢组物质的提取鉴定过程和代谢组数据的分析方法,主要是对代谢组数据整理和代谢网络推断过程进行综述。     

城市建筑代谢研究方法及其展望

建筑代谢是当前城市代谢研究领域中的一个新兴热点问题,其研究着重关注建筑系统中物质能量流动可能对周围环境产生的压力及其有害影响。本文在阐明城市建筑代谢内涵的基础上,综述了国内外建筑代谢研究方法的进展情况,分析了目前城市建筑代谢研究方法的适用范围及其特点,指出了城市建筑代谢研究方法在未来应从以下几个方面发展:开发跨城市边界的代谢研究方法;注重建筑代谢中非物质性代谢流研究;制定适合乡土建筑地域特点的代谢研究方法;综合物质量和价值量的建筑代谢研究,全面认识和评价建筑的可持续性。     

脂质代谢在乳腺癌发病中的作用

乳腺癌已经成为全球第一大癌症,其发病机制及治疗方法的探索越来越受到人们重视。脂质代谢异常是癌细胞中最突出的代谢改变之一,探索乳腺癌细胞中脂质代谢的改变,以寻找新的诊断指标和治疗靶点是至关重要的。本文从脂肪酸代谢、甘油三酯代谢、胆固醇代谢和脂质代谢信号通路4个方面介绍脂质代谢异常在乳腺癌中的研究进展,为靶向脂质代谢治疗乳腺癌提供新思路和新方法。     

病毒感染影响宿主细胞代谢研究进展

作为专性的细胞内寄生物,病毒没有独立代谢的能力,因此完全依赖于宿主细胞的代谢机制。病毒利用宿主细胞代谢网络提供的能量和生物合成前体物质来驱动其复制、装配和释放。因此,病毒挟持宿主细胞代谢以实现自身的复制和增殖。此外,病毒还可以通过编码辅助代谢基因(auxiliary metabolic genes,AMGs)调控宿主的细胞代谢,影响碳、氮、磷、硫循环,参与微生物驱动的生物地球化学循环。本文主要从细胞葡萄糖代谢、谷氨酰胺代谢、脂肪酸代谢、病毒AMGs调控宿主代谢影响生物地球化学循环4个方面总结病毒感染对宿主核心代谢途径影响的研究,以期为深入理解病毒-宿主相互作用提供参考,也将为通过代谢干预治疗病毒性疾病提供一定的理论依据。     

植物次生代谢基因工程

植物次生代谢基因工程,是利用基因工程技术对植物次生代谢途径的遗传特性进行改造,进而改变植物次生代谢产物。植物次生代谢基因工程的出现是人类对次生代谢途径的深入了解和分子生物学向纵深发展的结果,同时它又促进了次生代谢分子生物学的发展。调控因子的应用和多基因的协同转化为植物次生代谢基因工程拓宽了思路。从次生代谢图谱、植物基因工程策略和植物转基因方法等方面对植物次生代谢的基因工程研究进展做一简要概述。     

植物次生物的代谢途径

系统地介绍了关于植物次生物代谢途径方面的研究成果,归纳了植物次生物的3个主要代射途径:酚类代谢途径、萜类代谢途径、生物碱代谢途径,并对其代谢机理进行了探讨。     

柠檬酸钠对L-组氨酸发酵代谢流分布的影响

目的：建立谷氨酸棒杆菌TL1105生物合成L-组氨酸的代谢网络模型,并进行代谢网络计量分析。方法：通过所构建的L-组氨酸代谢网络模型,利用MATLAB软件计算出添加柠檬酸钠和不添加柠檬酸钠发酵中后期代谢网络的代谢流分布。结果：在L-组氨酸分批发酵过程中,在发酵初期未添加柠檬酸钠的条件下流向戊糖磷酸途径（HMP）的代谢流为9.59,合成组氨酸的代谢流为8.91;在发酵初期添加2g/L柠檬酸钠的条件下流向HMP的代谢流为12.74,合成组氨酸的代谢流为9.61。结论：在发酵初期添加柠檬酸钠能够改变L-组氨酸生物合成途径的关键节点6-磷酸葡萄糖、丙酮酸及乙酰辅酶A的代谢流分布,保持糖酵解途径、三羧酸循环与HMP之间代谢流量平衡,有利于提高L-组氨酸生物合成途径的代谢流量,最终使流向组氨酸的代谢流增加了7.86%。     

植物次生代谢物途径及其研究进展

植物次生代谢是植物在长期进化过程中与环境相互作用的结果,由初生代谢派生。萜类、生物碱类、苯丙烷类为植物次生代谢物的主要类型,其代谢途径多以代谢频道形式存在,具有种属、生长发育期等特异性。从植物次生代谢物的分类、代谢途径及代谢调控基因工程等方面展开论述,重点介绍了次生代谢物的生物合成途径,以及利用基因工程等技术对植物次生代谢途径进行遗传改良等方面的研究进展,为全面认识植物代谢网络、合理定位次生代谢及其关键酶、促进野生植物资源可持续利用等提供理论依据。     

2021年“代谢生物学”专题征稿

代谢是生物体内所发生的用于维持生命活动的一系列有序化学反应的总称,是一切生命活动的核心和基础。从生物体利用的营养物质的不同可将代谢分为糖、脂以及氨基酸的代谢。从代谢通路的特点可分为合成简单小分子或将小分子继续合成生物大分子的合成代谢、将各类生物分子降解以产生能量的分解代谢以及清除生物体产生的有毒废物的清除代谢。不同营养物质以及代谢通路互相关联,构成了复杂的代谢网络。为报道代谢生物学领域取得的最新研究成果及发展动态,《生物技术通报》编辑部将组织出版“代谢生物学”专题,欢迎相关领域的专家学者为本刊撰稿,展示代谢生物学研究的最新发展趋势。     

肠道微生物代谢苷类化合物的研究进展CSCD

肠道微生物对苷类化合物的体内代谢十分重要,可分泌代谢酶进行脱糖基、脱甲基、脱羟基、水解和氧化还原等反应将苷代谢生成次级苷、苷元或其他代谢产物,从而促进苷类药物的吸收并发挥药效。本文论述了肠道微生物及代谢酶对苷类化合物代谢的意义,总结了肠道微生物对不同结构类型的苷类化合物的代谢规律及代谢产物,为了解苷类药物的疗效基础、作用机理及利用微生物转化开发苷类药物提供参考。     

不同寄主植物对云南紫胶虫自然种群的影响

研究了云南紫胶虫(Kerria yunnanensis)在聚果榕、南岭黄檀、钝叶黄檀和偏叶榕上的发育、存活和繁殖情况.结果表明：在自然条件下,云南紫胶虫在钝叶黄檀上的种群初始密度最高,为181.17头·cm^-2,聚果榕上最低,为145.27头·cm^-2;雄虫占的比例以在南岭黄檀上最少,为0.19,偏叶榕和聚果榕上最多,为0.24;从幼虫到成虫的累积死亡率,南岭黄檀上最高,为90.03%,偏叶榕上最低,为87.05%;完成世代时间以在南岭黄檀上最长,为156 d,聚果榕上最短,为140 d;平均怀卵量以在南岭黄檀上最高,为536粒,聚果榕上最低,为345.86粒;虫体质量以在南岭黄檀上最大,为12.62 mg,偏叶榕上最小,为9.03 mg;世代净增值率以在南岭黄檀上最高,为48.51,聚果榕上最小,为32.79.综合比较4种不同寄主植物,南岭黄檀是云南紫胶虫夏季世代种群生长发育和繁殖最适宜的寄主.     

大白菜相对于结球甘蓝连锁群特异SSR标记的筛选

以9个大白菜品种和10个结球甘蓝品种为试材,对位于芸薹属A基因组10个连锁群的207对SSR引物进行PCR筛选,共筛选出33个大白菜相对于结球甘蓝的特异SSR标记,涉及了大白菜的10个连锁群,其中位于A1连锁群3对,A2连锁群4对,A3连锁群5对,A4连锁群2对,A5连锁群3对,A6连锁群4对,A7连锁群2对,A8连锁群1对,A9连锁群2对,A10连锁群7对。为进一步利用SSR标记鉴定结球甘蓝—大白菜异附加系奠定了基础。     

中国海南省锈菌资料补编

补充记载了采自海南省的9种锈菌。甲竹Bambusa remotiflora上的华南柄锈菌Puccinia austrosinensis、大花紫薇Lagerstroemia speciosa上的紫薇夏孢锈菌Uredo lagerstroemiae和海南薯Ipomoea sumatrana上的宽乳单胞锈菌Uromyces latimammatus为新种;厚叶素馨Jasminum pentaneurum上的巴氏查科锈菌Chaconia butleri、猪肚木Canthium horridum上的鱼骨木驼孢锈菌Hemileia canthii、牛筋果Harrisonia perforata上的牛筋果无眠多胞锈菌Kuehneola harrisoniae、毛咀签Gouania javanica上的椴叶咀签柄锈菌Puccinia gouaniae-tiliaefoliae、蒲桃Syzygium jambos上的番石榴柄锈菌Puccinia psidii以及象草Pennisetum purpureum上的钝叶草柄锈菌Puccinia stenotaphri为中国新记录。引证的标本均保存于中国科学院菌物标本馆（HMAS）。     

中国春孢锈菌属增补

本文对我国春孢锈菌属(形式属)增补了以下9个种：1．腺梗菜春孢锈菌Aecidium adenocauli Syd． 寄主：腺梗菜Adenocaulon himalaicum Edgew (菊科Compositae) 2．臭椿春孢锈菌(新种) Aecidium ailanthi J．Y．Zhuang sp．nov．寄主：臭椿 Ailanthus altissima Swingle (苦木科Simaroubaceae)3.筋骨草春孢锈菌 Aecidium alugae Syd．寄主：紫背金盘 Ajuga nioponensis Makino (唇形科 Labiatae) 4．八角枫春孢锈菌 Aecidium alangii Hirats．＆ Yosh 寄主：长毛八角枫 Alangium kurzii Craib,瓜木A platanifoHum Harms (八角枫科 Alangiaeeae) 5．紫珠生春孢锈菌(新种) Aecidium callicarpivola J Y．Zhuang sp．nov.寄主：杜虹花 Callicarpa oedunculata R,Br．(马鞭草科Verbenaeeae) 6．吴茱萸春孢锈菌(新种) Aecidium evodiae J．Y．Zhuang sp．nov． 寄主：吴茱萸 Evodia rutaecarva (Juss．)Benth．(芸香科Rutaceae) 7．杨叶木姜子春孢锈菌(新种) Aecidium litseae-populifoliae J．Y．Zhuang sp．Nov．寄主：杨叶木姜子 Litsea povulifolia Gamble (樟科Lauraceae) 8．青海春孢锈菌(新种) Aecidium qinghaiense J Y．Zhuang sp．nov． 寄主：莴苣属一种Lactuca sp．(菊科Compo sitae) 9．合掌消春孢锈菌 Aecidium vincetoxici P．Henn．＆ Shirai 寄主：牛皮消 Cynanchum auriculatum Royle (萝藦科 Asclepiadaceae)     

Patterns of species diversity on an oceanic versus a continental island mountain: a hypothesis on species diversification1

Abstract. The vegetation on a wet mountain slope on Haleakala (an oceanic island) is compared with that on Kinabalu (a continental island) to examine relationships between regional floristic richness and α- and β-diversities. The two mountains are similar in their constant tropical climate, generic and family-level floristic elements and geological age of the summit regions, but different in regional floristic richness (rich on Kinabalu vs. poor on Haleakala). α-diversity of canopy and subcanopy tree species was much higher on Kinabalu than in comparable zones on Haleakala. Average turnover rate of species (as logarithmic community similarity) on the slope was one order of magnitude greater on Kinabalu than on Haleakala (0.127 vs. 0.017 per 100 m alt.). While there were genera with wide altitudinal ranges on both mountains, a large proportion of the genera was differentiated into parapatric altitudinal congeners on Kinabalu. By contrast, most genera are altitudinally monotypic on Haleakala. The number of sympatric congeners per genus, and the frequency of multi-specific genera per plot were high on lower slopes but decreased with increasing altitude on Kinabalu, whereas the values were low across all altitudes on Haleakala. These patterns suggest that sympatric and parapatric species radiation was less on Haleakala than on Kinabalu. This may be related to Haleakala's initially poor and disharmonic flora.     

Two new species of Leporinus (Characiformes: Anostomidae) from the Brazilian Amazon,and redescription of Leporinus striatus Kner 1858

Two new species of Leporinus are described from tributaries of the Rio Amazonas in Brazil. One species is known from the Jari and Tapajós River basins, and is identified on the basis of a gas bladder reduced in size, a dark midlateral stripe on the body, dark transverse bars on the dorsum, a subinferior mouth, three teeth on the premaxilla, four teeth on the dentary and 16 scale rows around the caudal peduncle. The second new species is known from the Tocantins, Xingu and Tapajós River basins, and is identified on the basis of three dark longitudinal stripes on the body, a subinferior mouth, three teeth on the premaxilla, four teeth on the dentary and 12 scale rows around the caudal peduncle. In addition, Leporinus striatus is redescribed based on type and additional specimens from the Río de La Plata, Amazonas, Orinoco, Atrato, Magdalena and Sinu River basins. Leporinus striatus is identified on the basis of four dark longitudinal stripes on the body, a subterminal mouth, three teeth on the premaxilla, four teeth on the dentary and 16 scale rows around the caudal peduncle.     

异迟眼蕈蚊在不同植物上的生长发育及种群参数

【目的】异迟眼蕈蚊Bradysia difformis Frey的幼虫取食为害作物的地下部分,影响作物的品质,为了明确韭菜、蚕豆、生菜、白菜和甘蓝5种植物对异迟眼蕈蚊生长发育以及繁殖的影响。【方法】本试验采用室内人工饲养测定的方法,研究了5种不同植物对异迟眼蕈蚊生长发育,繁殖力和存活率的影响,并统计了其对异迟眼蕈蚊种群参数的影响。【结果】结果表明:卵到蛹的发育历期依次为甘蓝、白菜、韭菜、生菜、蚕豆;5种植物对雌雄虫寿命影响不显著,对雌虫产卵量以及蛹重均有影响,其中在韭菜上的产卵量最大,甘蓝最少,在韭菜上蛹最重,生菜上蛹最轻;异迟眼蕈蚊的存活率随着生长发育降低,总体在韭菜上的存活率高于其他寄主植物,在生菜上的存活率均最低。统计分析不同植物对异迟眼蕈蚊种群参数的影响,净增殖率和内禀增长率在韭菜上最大而在甘蓝上最小;平均世代周期在蚕豆上最短,甘蓝上最长;种群加倍时间在韭菜上最短,而在甘蓝上最长。【结论】由此可知,异迟眼蕈蚊均可以在韭菜,蚕豆,生菜,白菜和甘蓝上完成生长发育及繁殖,其对5种植物的适应性依次为:韭菜、蚕豆、白菜、甘蓝和生菜。     

Biology and life table studies of the oriental tobacco budworm,Helicoverpa assulta (Lepidoptera: Noctuidae), influenced by different larval diets

Development, survivorship, pupal weight, oviposition, and life table parameters of the oriental tobacco budworm, Helicoverpa assulta Guenée, were evaluated in the laboratory on an artificial diet, pepper (Capsicum frutescens L.), and tobacco (Nicotiana tobacum L.). We found that the average developmental time of immature stages was longest on tobacco (36.2 d), intermediate on pepper (34.4 d), and shortest on artificial diet (33.5 d). Immature survival from egg to pupa varied from 31% on tobacco, 43% on pepper, and 74% on artificial diet. Pupal weight ranged from 197.4 mg/pupa on tobacco, 233.1 mg/pupa on pepper and 253.4 mg/pupa on artificial diet. The average numbers of eggs laid by adults reared as larvae on the artificial diet, pepper, or tobacco were 614, 421 and 334 eggs/female, respectively. Numbers of remaining eggs in ovaries of the adult females reared as larvae on the artificial diet, pepper, or tobacco were 16, 26, and 42 eggs/female, respectively. The longevity of adult females developed from larvae reared on the three diets was not significantly different, whereas the longevity of male adults from the larvae reared on artificial diet was longer (16.8 d) than that for males reared on tobacco (13.8 d) and pepper (13.3 d). The intrinsic, finite, gross, and net rates of increase were highest for females reared as larvae on artificial diet, lowest for females emerging from larvae reared on tobacco, and intermediate for females emerging from larvae reared on pepper. Generation times and doubling time of H. assulta were shortest for larvae fed artificial diet, intermediate from larvae reared on pepper, and longest from larvae reared on tobacco. We concluded that the artificial diet was the most suitable larval diet of H. assulta followed by pepper, and tobacco.     

Habitat associations of California ground squirrels and Botta's pocket gophers on levees in California

Vegetation management on levees, especially removal of trees and shrubs, might affect burrowing mammals that are considered threats to levee integrity. We evaluated habitat associations of California ground squirrels (Otospermophilus beecheyi) and Botta's pocket gophers (Thomomys bottae) on levees in the Sacramento Valley to assess the effects of levee vegetation management on these species. Using burrows as an indirect measure of mammal presence, we found that the presence of trees had a negative effect on the occurrence and abundance of ground squirrels on levees, and on the location of their burrowing activities on the levee slope, potentially because visual occlusion caused by tall woody vegetation impedes detection of predators. Similarly, trees had a negative effect on the abundance of pocket gophers on levees and on the location of their burrowing activities on the levee slope, probably because of the effect of tree cover on food availability. The conversion of woodland habitats to grasslands on levees most likely will result in increased occurrence, abundance, or both of ground squirrels and pocket gophers, and thereby increase the potential threat that their burrowing activities pose to levee integrity. © 2012 The Wildlife Society.     

Continuous long-term somatic embryogenesis in alfalfa

Summary Somatic embryogenic callus was induced on two induction media, B5h and SH4K. Embryos formed on the callus induced on B5h medium when the callus was still on the induction medium. On the other hand, embryos could not form on the callus induced on SH4K medium unless the callus was transferred to a growth regulator-free medium. Callus induced and maintained on B5h medium lost embryogenic capability quickly during the subculture. Callus induced and maintained on SH4K medium, however, consistently remained highly embryogenic. The callus mass showed steady increase during its maintenance on SH4K medium. The embryos induced on SH4K medium showed vigorous germination. Normal and fully fertile plants were recovered from the embryos developed from the callus maintained on SH4K medium.