Genetic parameters for physical and quality traits of mohair in South African Angora goats

The continuous evaluation and genetic improvement of fleece traits in Angora goats are of major importance to the Angora goat industry. The objective of this study was to estimate variance components and genetic parameters for both physical and quality traits of mohair in South African Angora goats. The data used for this study were collected on between 898 and 6211 kids (depending on the trait measured) born between 2000 and 2006 in 11 different Angora goat studs. Variance components and genetic parameters were estimated with the ASREML programme for fleece weight, fibre diameter, coefficient of variation of fibre diameter, standard deviation of fibre diameter, comfort factor, spinning/effective fineness and standard deviation of fibre diameter along the length of the staple. Most of these traits (excluding fleece weight) are measured using OFDA technology exclusively, and this study was the first attempt to calculate genetic parameters for these traits in South Africa. A model including the direct additive genetic effects only, were the most appropriate for estimation of all parameters. Heritability estimates were 0.24 ± 0.03 for fleece weight, 0.45 ± 0.03 for fibre diameter, 0.37 ± 0.10 for coefficient of variation of fibre diameter, 0.32 ± 0.11 for standard deviation of fibre diameter, 0.63 ± 0.10 for comfort factor, 0.61 ± 0.10 for spinning/effective fineness and 0.14 ± 0.08 for standard deviation of fibre diameter along the length of the staple. Results from this study can now be applied for the estimation of breeding values for fleece production of South African Angora goats and in incorporation into selection programs.     

QTL for mohair traits in South African Angora goats

The aim of this study was to identify QTL associated with mohair production and quality traits in South African Angora goats. Limited research has been performed on QTL influencing the economically important mohair traits of Angora goats. Twelve half-sib Angora goat families with an average of 58 offspring per sire were genotyped for 88 microsatellites covering 22 autosomes. Phenotypic data was collected at second and third shearing for males and females respectively. A linkage analysis was performed under the half-sib model using the least squared regression approach of GridQTL. Three putative QTL were detected for fleece weight on CHI 2, 5 and 24, which corresponds with the locations of keratin and keratin-associated proteins. This study detected two putative QTL associated with mohair fibre diameter (on CHI 4 and 24, respectively), which is the most important price-determining trait. Four QTL were detected on CHI 8, 13, 18 and 20 which influence both comfort factor and spinning fineness. The variance explained by the QTL ranged between 6.9% for fibre diameter and 33.6% for standard deviation along the length of the staple. These results reveal segregation of QTL influencing mohair production and quality, and contribute to the understanding of the genetic variation of mohair traits.     

Genetic parameters and relationships between fibre and type traits in two breeds of Peruvian alpacas

Four fibre traits (fibre diameter, FD; coefficient of variation of FD, comfort factor; and standard deviation of FD) were jointly analysed with six subjectively scored type traits (fleece density, crimp, lock structure, head, coverage, and balance) in two breeds of Peruvian Altiplano alpaca (Suri, SU; and Huacayo, HU) to ascertain their genetic relationship. A total of 2405 fibre records and 2194 type scores were available for the HU breed whereas these figures were 709 for fibre records and 650 for type scores for the SU breed. Estimated heritabilities for fibre traits were moderate to high, ranging from 0.565 to 0.699 in the SU breed and from 0.255 to 0.417 in the HU breed. Genetic and permanent environmental correlations between fibre related traits were extremely similar across breeds suggesting that these traits are fairly the same. Heritabilities estimated for the type traits tended to be lower than those estimated for the fibre traits particularly in the SU breed (ranging from 0.173 to 0.272). Fibre and type traits were, in general, genetically poorly correlated except for crimp in the HU breed, which had favourable correlations, from moderate to high, for fibre traits. In Altiplano areas in which fibre performance recording could not be implemented, crimp scoring makes it feasible to carry out mass selection in the Huacayo breed and furthermore include rural communities in national or regional selection programmes.     

Characterization of the effect of Melanocortin 1 Receptor,a member of the hair color genetic locus,in alpaca (Lama pacos) fleece color differentiation

Little is known about the inheritance and influence of the fleece color gene Melanocortin 1 Receptor (MC1R). Melanocortin 1 Receptor (MC1R) is a well-known gene responsible for red versus black fleece pigmentation and is hypothesized to be a candidate gene for variation in alpaca coloration patterns. Inheritance of red versus black pigmentation in the context of genetic mutation is well understood in many domesticated mammals. We characterized the MC1R gene in a population of multi-colored alpacas in order to better understand its effect on coat color in the alpaca. Our characterization of the alpaca MC1R gene revealed 11 mutations. Of these one is a 4 bp deletion, four are silent mutations and six are single nucleotide polymorphisms (SNPs) that alter the amino acid sequence (T28V, M87V, S126G, T128I, S196F, R301C). No mutation correlated completely with fleece color in alpacas at the MC1R locus. This may be due to the epistatic relationship of MC1R with other coat color genes especially agouti signaling protein (ASIP).     

The relationship between permanent incisor wear and mohair production and attributes in grazing adult Angora goats

We aimed to quantify if and to what extent permanent incisor wear affected mohair production in adult Angora castrate goats. The goats were grazed on annual temperate pastures for 6 years. During their sixth year mohair was harvested every 6 months and liveweight measured. Incisors were inspected at age 6 years and the amount and pattern of wear quantified. Restricted maximum likelihood (REML) base models were developed to account for background sources of variation. Once a base model had been selected for each fleece attribute, an extra term for the linear effect of the first and other permanent incisor wear were added to the model. During the year mean liveweight, greasy mohair production, clean mohair production and mean fibre diameter were (S.D.): 55.6 (5.85) kg, 4.97 (1.00) kg, 4.16 (0.87) kg, 34.8 (4.02) μm. Mean wear on permanent first incisors was 9% (range 0–30%). There was little wear on other permanent incisors. Greasy fleece weight, clean fleece weight, staple length and fleece entanglement were reduced significantly with increased wear of first permanent incisors. There were no significant effects of incisor wear detected for nine other fleece attributes or liveweight. The results indicate that 30% wear of the permanent first incisors reduced greasy fleece production by 20% and reduced clean fleece production by 30%. Given the magnitude of the effects detected it is clear that relatively small amounts of wear of permanent incisors in adult Angora goats reduce production of mohair and consequently will reduce financial returns from mohair sales. The clear implication is that managers of mohair producing enterprises should assess the incisors of adult Angora goats and use this information in determining which animals to cull from their flocks.     

Genetic parameters for medullated fiber and its relationship with other productive traits in alpacas

The alpaca fiber diameter (FD) varies from 18 to 36 μm, being the finer fiber categories highly appreciated. However, the alpaca fiber presents some limitations in the textile industry due to the high incidence of fiber medullation and diameter variability, both reduces the comfort feeling of the garments. Decreasing or even removing medullation could be a possible selection objective in alpaca breeding programs for increasing economic value of the alpaca fiber. Therefore, the present work aimed to estimate genetic parameters regarding medullation traits, as well as the genetic correlations with other economical important traits, to be able to select the appropriate criteria to reduce or remove medullation on alpaca fiber and help to reduce the prickle factor in the garments. The data was collected from 2000 to 2017 and belonged to the Pacomarca experimental farm. There were 3698 medullation records corresponding to 1869 Huacaya and 414 Suri genetic types. The fiber samples were taken from the mid side, and were analyzed in an OFDA 100® device. The traits analyzed were percentage of medullation (PM), medullated fiber diameter (MFD), FD, standard deviation of FD, greasy fleece weight as fiber traits; density, crimp in Huacaya and lock structure in Suri, head conformation, leg coverage as morphological traits; weaning weight and age at first calving as secondary and functional traits. Genetic parameters were estimated via a multitrait restricted maximum likelihood. The heritabilities for PM and MFD were 0.225 and 0.237 in Huacaya genetic type and 0.664 and 0.237 in Suri genetic type, respectively; heritabilities for other traits were moderate for productive and morphological traits, and low to moderate for secondary and functional traits. The genetic correlations PM–FD and MFD–FD were high and favorable in both genetic types, between 0.531 and 0.975; the genetic correlation PM–MFD was 0.121 in Huacaya and 0.427 in Suri. The rest of genetic correlations with other traits were in general moderate and favorable. The repeatabilities were 0.556 and 0.668 for PM, and 0.322 and 0.293 for MFD in Huacaya and Suri genetic types, respectively. As a conclusion, PM was identified to be a good selection criterion, probably combined in an index with FD to reduce prickling factor.     

Hair follicle characteristics and fibre production in South American camelids

Hair follicle and fibre characteristics of Peruvian alpaca and llama and Bolivian llama were analysed in three experimental studies. The first experiment was designed to determine the age at which all the secondary follicles reach maturity, as well as to compare the skin follicular structure and activity among these different types of Peruvian camelids. It is concluded that the South American camelids investigated in this study gained a complete and mature skin follicle apparatus at an early age, and hence producers should practise an early first shearing. A second Peruvian experiment investigated comparative fibre cuticular structure on twenty Peruvian domestic camelids comprising huacaya, suri and llama (woolly) 'chacos' genotypes. The results showed that the number of cuticular scales per 100 μm fibre length proved to be strongly affected by both the fleece type and the fibre diameter. The suri fleece was clearly differentiated from those of both huacaya and llama by possessing the highest percentage of fibres with a number of scales less than eight, the lowest percentage of fibres with more than nine scales, along with the lowest percentage of fibres with a diameter of more than 35 μm. It is concluded that, with the exception of the scale height, the cuticular parameters investigated in this study can be utilised in textile fibre analyses for distinguishing among these three types of fleece, as well as in selection projects designed to produce homogeneous fibres from Peruvian domestic camelids. A further study was conducted to determine the age at which the hair follicles in Bolivian llamas reach maturity as well as for comparing the skin follicular structure and activity between the two distinct genotypes. Thirty-one llama kids were chosen. They were born between January and April 1998 and were of different sex and of 'Q'aras' (or Carguera) or 'T'amphullis' type. Skin biopsies were taken from the right mid-costal region at 2, 4, 6, 8,10,12 and 14 months of age in order to monitor four follicular parameters. In this experiment, secondary to primary (S/P) data show that the Bolivian llama population analysed possessed a complete and mature skin follicle apparatus at birth that remained essentially constant throughout the investigation period. Due to the variation of these traits inside the same genetic population, the present results showed that T and Q types could only be subjective on the basis of S/P ratio.     

羊驼毛的结构及其特性研究

为研究羊驼毛的特性并评价羊驼的生产性能,观察了羊驼皮肤和毛的显微结构和超微结构。结果表明:皮肤中皮脂腺很少,这决定了羊驼毛易清洗;毛囊由初级毛囊和大部分复合毛囊组成,因此大部分羊驼毛很细;羊驼毛的髓质比例小于皮质所占比例,而且白毛的髓质与皮质的比例大于有色毛,这决定了羊驼毛轻而具有好的保暖性,且白毛重量轻于有色毛;羊驼毛的皮质细胞具有双层结构,上皮细胞有5层,皮质周围有内、外上皮,这些结构可能使毛避免损伤,并可使黑色素颗粒避免丢失以维持其自然色;羊驼毛的鳞片呈锯齿状并形成裂痕,具有疏水性,因此羊驼毛可以防水。所有这些特点决定了羊驼毛在毛纺工业中是理想的原料。     

Genetic diversity analysis of French goat populations reveals selective sweeps involved in their differentiation

After domestication 11 000 years ago in Asia Minor, the goat followed human migration to Europe and Asia. It was then introduced in Africa and is now raised all over the world. In this study, we exploited a dataset composed of 54 000 SNPs (Illumina goat DNA chip) to analyze the genetic diversity of 223 individuals belonging to eight French breeds (Alpine, Angora, Corse, Fossés, Poitevine, Provençale, Pyrénées and Saanen). Analyses carried out included individual‐based approaches (principal component analysis and population structure) and population‐based approaches (phylogenetic tree constructions). The results of the genetic diversity analyses revealed that French breeds are clearly differentiated, in particular, the Angora breed that originates from south west Asia. The Provençale breed shows a very original genetic pattern that could be the result of ancient admixture. Then, selection signatures were detected by identifying regions of outlying genetic differentiation between populations. Five genomic regions were detected under selection on chromosomes 5, 6, 11, 13 and 20, revealing mainly soft selective sweeps and a few hard selective sweeps and highlighting candidate genes that had been selected for during the evolutionary history of these breeds. Among them, two coat coloration genes (ADAMTS20 and ASIP) and one gene related to milk composition (CSN1S1) were involved.     

QTL affecting fleece traits in Angora goats

With the aim to detect chromosome segment (quantitative traits loci, QTL) affecting fleece traits in Angora goats, a genome scan using 76 microsatellite markers spanning 1261 cM on 21 chromosomes was conducted. Eight paternal half-sib families were used, which included a total of 288 kids from a dispersed nucleus herd.Mid-side mohair samples were taken from kids at 4 months of age and eight phenotypic fleece traits were measured.We found putatives QTL for coefficient of variation of average fiber diameter (CVAFD) in chromosome 1 and 13, for kemp fiber (KEMP) in chromosome 5 and for discontinuous medullated fibers (DISC) and staple length (SL) in chromosome 2.These results demonstrate the segregation of quantitative traits involved in mohair production. Further studies will concentrate on these regions to characterize the variation of these QTL.     

The determination of digesta particle size in some herbivores

Methods for determining and describing digesta and faecal particle size were studied. Higher mean particle size values were demonstrated for wet sieving as compared to dry sieving. Equines had larger faecal particle size than ruminants and rabbits. Particle size decreased with body weight in rumen-reticulum and facese for the ruminants. The fibre particle size was the same in rabbit hard and soft faeces and similar to sheep and goat faeces.The excretion pattern of Cr-mordanted fibre in sheep was shown to be influenced by the fraction that was labelled in the rumen. Retention time in the rumen and whole tract increased with increasing particle size.In rabbits, <75 μ or > 300 μ Cr-mordanted fibre particles gave similar marker retention times.     

5个山羊品种CSN1S2基因的Alw26I酶切

利用PCR-RFLP技术对西农萨能奶山羊、关中奶山羊、陕南白山羊、安哥拉山羊和波尔山羊5个山羊品种的170个个体的αs 2酪蛋白(CSN1S2)基因进行多态性分析,结果表明：扩增大小为310 bp的片段经限制性内切酶Alw26I酶切后表现多态,且5个山羊品种该基因座位均处于Hardy-Weinberg平衡状态。西农萨能奶山羊、关中奶山羊、陕南白山羊、安哥拉山羊和波尔山羊的基因杂合度/有效等位基因数/Shaanon信息熵/PIC值分别为0.1589/1.1889/0.2955/0.1463, 0.4114/1.6981/0.6017/0.5171,0.1653/1.1980/0.3046/0.1516,0.0646/1.0691/0.1463/0.0625,0.0541/1.0572/ 0.1270/ 0.0526。分析结果显示,关中奶山羊的遗传多样性最丰富,表现为高度多态;其次是西农萨能奶山羊和陕南白山羊,而安哥拉山羊和波尔山羊的遗传变异程度最低。     

Genetic Analysis of Giardia from Hoofed Farm Animals Reveals Artiodactyl-Specific and Potentially Zoonotic Genotypes

ABSTRACT. Thirty one Giardia isolates, established from six species of hoofed livestock by axenic culture or growth in suckling mice, were compared genetically by analysis of DNA amplified from loci encoding variant surface proteins or the enzyme glutamate dehydrogenase and by allozyme analysis. The isolates were heterogeneous, but all showed affinity with genetic Assemblage A-one of two major assemblages defined previously by analysis of Giardia from humans. Three distinct genotypes were evident. Ten isolates (eight axenic and two established in suckling mice) from an alpaca, pig, horse, cattle and sheep were indistinguishable from human-derived G. intestinalis belonging to a previously designated genetic group (Group I). This genotype seems to have broad host specificity, including a zoonotic potential for humans. Five isolates (two axenic and three established in suckling mice) from an alpaca, a horse and sheep had close affinity with human-derived Group I and Group I1 G. inresrinalis genotypes. The other 16 isolates (comprising both axenic and suckling mouse-propagated cultures derived from cattle, sheep, alpaca, a goat and pigs in Australia and Europe) differed from all other Giardia with "duodenalis" morphology that have been examined by these methods and they segregated as a highly distinct sublineage (referred to herein as 'Novel livestock') within genetic Assemblage A. The predominance of 'Novel livestock' genotypes in the test panel and their apparent exclusive association with artiodactyl hosts indicates that they may be confined to this group of mammals. Assemblage B genotypes, which are prevalent in humans and some other animal species, were not detected.     

Converting multi-trait breeding objectives into operative selection indexes to ensure genetic gains in low-input sheep and goat breeding programmes

Small ruminant breeding programmes in low-input production systems are best organised at the community level. Participant farmers have to agree on goal traits and their relative importance. When BLUP breeding values of goal traits are not available in time, appropriate selection indexes can be used to aid visual selection. Taking Ethiopian Abergelle goat and Bonga sheep community-based breeding programmes (CBBPs) as an example, breeding objective functions were defined and selection indexes were constructed and evaluated. Breeding goals for Abergelle goats included early sale weight, survival and milk production. Breeding goals for Bonga included the number of offspring born, sale weight and survival. Economic weights of objective traits can be used in several ways depending on measured traits and the reliability of their genetic parameters. Selection indexes included combinations of objective traits measured on candidates and their dams and situations when Abergelle communities prefer to restrict genetic changes in number of offspring born or adult weight and when Bonga communities prefer to restrict changes in adult weight. Genetic and economic gains were evaluated as well as sensitivity to feed cost assumptions and to repeated dam records. After independent culling on preponderant traits such as coat colour and horn/tail type, sires in Abergelle goat community breeding programmes should be selected on indexes including at least own early live weight and their dams average milk production records. Sires for Bonga sheep programmes should be selected on own early live weight and desirably also on their dam’s number of offspring born. Sensitivity to feed cost assumptions was negligible but repeated measurements of dam records improved index accuracies considerably. Restricting genetic changes in number of offspring born or adult weight is not recommended.     

Relationships between integumental characteristics and thermoregulation in South American camelids

Hair fibre is regarded as a unique mammalian feature with an important role for endothermy. Artificial selection for hair characteristics resulted in marked changes with regard to follicle number, type, distribution, growth and natural shedding. This review focuses on the fine fibre-producing South American camelids (SACs) and the relationship between their hair coat and thermoregulation. SACs have developed several special integumental characteristics. While the hair coat of the wild lamoids vicuña (Vicugna vicugna) and guanaco (Lama guanicoe) is formed by two types of hair (the coarse outer guard hairs and a finer undercoat), the domesticated llamas (Lama glama) and alpaca (Lama pacos) exhibit variably double coat and predominantly single coat, respectively. The distribution of the hair coat across the body is not homogenous. Thermal windows with shorter hair or thinner skin can be identified at the ventral abdomen, axillary space and inside of the thighs (about 20% of the skin), thus allowing to modulate heat dissipation. In contrast to sheep wool, lamoid fibres are mainly medullated. The thermal conductance of summer pelage was higher than that of the winter fleece and highest for the axillar and lower flanks. Lamoids have developed behavioural strategies to modify heat loss by adopting specific postures according to ambient conditions by closing or opening the thermal windows. Energy savings of 67% attributed to posture were calculated. SACs have shown to be able to adapt to a broad range of different climatic conditions. The specific integumental characteristics of SACs indicate that they have developed adaptation mechanisms particularly suited for cooler climates. Accordingly, hyperthermia might become a problem in hot, humid areas outside of their original habitat. Several studies showed the beneficial effect of shearing against heat stress. In particular, fertility in males exposed to heat stress may be improved by shearing. Infrared thermography reveals that in shorn animals the heat is radiated across the entire body surface and is not restricted to the thermal windows. However, shearing also changes the conditions of the protective layer, resulting in a loss of thermal conductance that may result in adverse effects when animals are kept under cold temperatures. The length of residual fibre appears to be crucial in avoiding excessive heat loss in a cold environment, as demonstrated by shearing experiments with different shearing machines. There is, therefore, potential for welfare considerations to conflict with industrial demands for fibre length or homogenous quality.     

Evolution and present situation of the South American Camelidae

This paper provides a review of South American camelid evolution, classification and present status. Particular attention is paid to the debate concerning origins of the domestic alpaca and llama and the contribution of research on faunal remains from Andean archaeological sites towards resolving this issue. Changes in incisor morphology during the domestication process suggest that the alpaca may be descended from the vicuna, while a comparison of fibre production characteristics in preconquest and extant llama and alpaca breeds indicates that extensive hybridization between the two species is likely to have occurred since European contact. The potential role of hybridization in the formation of extant South American camelid populations has not been studied, and may be the root cause of taxonomic disputes.     

Polymorphism of the caprine malic enzyme 1 ( ME1) gene and its association with milk quality traits in Murciano-Granadina goats

Malic enzyme 1 plays a fundamental role in lipid metabolism because it yields a significant amount of the NADPH necessary for fatty acid biosynthesis. In ruminants, however, its contribution to this biochemical process seems to be less relevant than in other livestock species. In this study, we have partially sequenced the goat ME1 gene with the aim of identifying polymorphic sites. Structural analysis of the goat ME1 amino acid partial sequence evidenced the existence of two dinucleotide-binding motifs, located at positions 158 to 163 (GLGDLG) and 301 to 306 (GAGEAA), and three amino acid residues (E245, D246 and D269) involved in the binding of Mn2+ and strongly conserved among mammalian species. Moreover, multiple sequence alignment allowed us to identify four single nucleotide polymorphisms at exons 5 (c.483C > T), 6 (c.667G > A), 9 (c.927C > T) and 11 (c.1200G > A). The effects of ME1 genotype on milk production and composition traits were investigated in a Murciano-Granadina goat population. None of the associations found reached statistical significance after applying Benjamini-Hochberg correction. At most, associations with uncorrected P-values below 0.01 were observed for C16:0, C18:1n-9t and total conjugated linoleic acids. These negative results reinforce the notion that ME1 plays an ancillary role in ruminant lipogenesis.     

QTL affecting conformation traits in Angora goats

A genomic screen for quantitative trait loci (QTL) affecting conformation traits was performed by genotyping 288 Angora goats offspring from 8 half-sub families with 76 microsatellite markers. The following traits were recorded: weaning weight (WW, Kg); stature (S, cm); chest depth (CD, cm); shoulder width (SW, cm); rump length (RL, cm); rump width (RW, cm); head length (HL, cm); head width (HW, cm); shin circumference (SC, cm); chest circumference (CC, cm) and body length (BL, cm). Data were analyzed using the QTL Express program. A total of 5 QTL were detected in five chromosomes with chromosome wide significance level. For the 11 analysed traits the results were: evidence of two possible QTL for HL were found in chromosomes 1 and 4, a putative QTL for trait CD was found in chromosome 2, evidence for BL was found in chromosome 8 and a possible QTL was found for trait CC in chromosome 9. The results reported here show the existence of chromosomal regions in Angora goats involved in conformation traits and represent the first in depth search in some specific-genome sections in order to identify and characterize the genetic variability involved in these traits.