Double Asymmetric Induction During the Addition of (RP)‐Menthyl Phenyl Phosphine Oxide to Chiral Aldimines

P,C‐Stereogenic α‐amino phosphine oxides were prepared from the addition of (R_P)‐menthyl phenyl phosphine oxide to chiral aldimines under neat condition at 80 °C in up to 91:9 dr_C and 99% yields. The diastereoselectivity was mainly induced by chiral phosphorus that showed matched or mismatched induction with (S)‐ or (R)‐aldimines, respectively. Chirality 28:132–135, 2016. © 2015 Wiley Periodicals, Inc.     

Measurement of the barrier to inversion of configuration in acyclic phosphite triesters

Synthesis of three acyclic chiral phosphites is reported, in the form of dithymidine phosphite triesters. These diastereomerically pure P-stereogenic phosphites undergo epimerization at a measurable rate at 150 °C. When the alcohols on the deoxyribose moieties are protected as acyls, decomposition is minimized and by computer fitting, rate constants for epimerization can be extracted. These allow for the first time calculation of the barrier to inversion of configuration in phosphite triesters, giving ΔG^†(150 °C) = 33.0 ± 0.2 kcal mol⁻¹, comparable to the inversion barrier seen for phosphines.     

Synthesis and characterization of cobalamines with anionic and neutral phosphorous donor ligands

In dimethyl formamide as solvent aquacobalamine reacts with the triorganyl phosphites 3–7 to give the corresponding (diorganylphosphito-P)cobalamines, their new β-axial ligands [P(O)(OR)₂]⁻ (3a–7a) being formed by partial hydrolysis. In methanol, however, additional methanolysis normally leads to (dimethylphosphito-P)cobalamine with the axial ligand [P(O)-(OMe)₂]⁻ (2a). Exceptions are P(OCH₂CH₂NMe₂)₃ (4) giving a complex with the only partially methanolized chiral ligand [P(O)(OCH₂CH₂NMe₂)- (OMe)]⁻ (4b), too, and the bicyclic phosphite 5 which is also coordinated in the unchanged, nonhydrolyzed form. All complexes are characterized by elementary analysis, electrophoresis, UVVis and ¹H, ³¹P NMR spectra. The chirality of the cobalamine moiety causes diatropism of the two organyl groups in the prochiral ligands [P(O)(OR)₂]⁻ which is well seen in the NMR spectra of the complexes with the methyl and phenyl derivatives 2a and 6a, whereas the spectra with ligands 3a and (in part) 4a are not resolved well enough to distinguish the two forms. With the chiral ligand 4b two diastereomers are obtained in different yields; this asymmetric induction is indicated by the intensities of the respective signals in the NMR spectra.     

Synthesis and thermochemical study of ligand substitution reactions of aminobis(phosphines), Ph2P(R)NPPh2, with [Me2Pt(COD)]

The reactions of aminobis(phosphines), Ph₂PN(R)PPh₂ (R = H, Me, Et, ⁿPr, ⁿBu, Ph), with Me₂Pt(COD) led to the formation of four-membered metallacycles in good yield. The enthalpies of the ligand substitution reactions are measured by the anaerobic solution calorimetry in THF at 30 °C.     

Multifunctional chiral aminophosphines for enantiodivergent catalysis in a palladium-catalyzed allylic alkylation reaction

Trifunctional MAP-based chiral phosphines were tested as new ligands in a Pd-catalyzed asymmetric allylic alkylation, demonstrating fast and enantiodivergent catalysis. The palladium complexes of representative ligands by X-ray analysis revealed a novel mode of P,N-coordination of the ligand to the palladium center, which may contribute to switching the sense of the asymmetric induction via combined steric and tunable H-bonding interactions between the metal complex and the substrates.     

Diastereoselective [2+2] photocycloaddition of chiral cyclohexenonecarboxylates to ethylene

The diastereoselective [2+2] photocycloaddition of cyclohexenonecarboxylates containing various chiral auxiliaries to ethylene is described. The effect of the auxiliary, reaction temperature, and solvent on diastereoselectivity was examined. The (?)‐8‐(p‐methoxyphenyl)menthyl group was found to be the most effective chiral auxiliary. The photoreaction of (?)‐8‐(p‐methoxyphenyl)menthyl cyclohexenonecarboxylate in methylcyclohexane at ?78°C gave the corresponding bicyclo[4.2.0]octanone derivative in 81% diastereomeric excess (d.e.). The extent of diastereoselectivity was found to be closely related to the most stable π‐stack conformation of the starting cyclohexenones. Chirality 15:504–509, 2003. © 2003 Wiley‐Liss, Inc.     

Complexation properties of aminophosphites bearing phosphorus and nitrogen atoms included in six-membered cycles

A series of amino phosphites having phosphorus or/and nitrogen atoms, which are included in a six-membered cycle, has been synthesized. The presence of such cycles in these P,N-bidentate ligands has been shown to strongly influence the ways of their coordination with Rh(I) and Pd(II) atoms. The resulting chelate complexes have been found to be less stable when the six-membered chelate metalacycle formed and the initial cycle of the ligand molecule comprise a bicyclic system with the phosphorus or nitrogen atom being as a spiro atom.     

Interactions between alkaline earth cations and oxo ligands. DFT study of the affinity of the Mg²+ cation for phosphoryl ligands

DFT (B3LYP/6-31+G(d)) calculations of Mg²⁺ affinities for a set of phosphoryl ligands were performed. Two types of ligands were studied: a set of trivalent [O = P(R)] and a set of pentavalent phosphoryl ligands [O = P(R)₃] (R = H, F, Cl, Br, OH, OCH₃, CH₃, CN, NH₂ and NO₂), with R either bound directly to the phosphorus atom or to the para position of a phenyl ring. The affinity of the Mg²⁺ cation for the ligands was quantified by means of the enthalpy for the substitution of one water molecule in the [Mg(H₂O)₆]²⁺ complex for a ligand. The enthalpy of substitution was correlated with electronic and geometric parameters. Electron-donor groups increase the interaction between the cation and the ligand, while electron-acceptor groups decrease the interaction enthalpy.     

Synthesis and polymerization of benzyl (3R,4R)-3-methylmalolactonate via enzymatic preparation of the chiral precursor

β-methylaspartate ammonia-lyase, EC 4.3.1.2, (β-methylaspartase) from Clostridium tetanomorphum was used to produce a 40/60 molar ratio of (2S,3R) and (2S,3S)-3-methylaspartic acids, 2a and 2b , respectively, from mesaconic acid 1 as substrate, on a large scale. To prepare (3R,4R)-3-methyl-4-(benzyloxycarbonyl)-2-oxetanone (benzyl 3-methylmalolactonate) 6, 2a and 2b were transformed, in the first step, into 2-bromo-3-methylsuccinic acids 3a and 3b and separated. After three further steps, (2S,3S)- 3a yielded the α,β-substituted β-lactone (3R,4R) 6 with a very high diastereoisomeric excess (>95% by chiral gas chromatography). The corresponding crystalline polymer, poly[benzyl β-(2R,3S)-3-methylmalate] 8 , prepared by an anionic ring opening polymerization, was highly isotactic as determined by ¹³C NMR. Catalytic hydrogenolysis of lactone 6 yielded (3R,4R)-3-methyl-4-carboxy-2-oxetanone (3-methylmalolactonic acid) 7 , to which reactive, chiral, or bioactive molecules can be attached through ester bonds leading to polymers with possible therapeutic applications. Because of the ability of β-methylaspartase to catalyse both syn- and anti-elimination of ammonia from (2S,3RS)-3-methylaspartic acid 2ab at different rates, the (2S,3R)-stereoisomer 2a was retained and isolated for further reactions. These results permit the use of the chemoenzymatic route for the preparation of both optically active and racemic polymers of 3-methylmalic acid with well-defined enantiomeric and diastereoisomeric compositions. Chirality 10:727–733, 1998. © 1998 Wiley-Liss, Inc.     

Studies of lysine cyclodeaminase from Streptomyces pristinaespiralis: Insights into the complex transition NAD+ state

Lysine cyclodeaminase (LCD) catalyzes the piperidine ring formation in macrolide-pipecolate natural products metabolic pathways from a lysine substrate through a combination of cyclization and deamination. This enzyme belongs to a unique enzyme class, which uses NAD⁺ as the catalytic prosthetic group instead of as the co-substrate. To understand the molecular details of NAD⁺ functions in lysine cyclodeaminase, we have determined four ternary crystal structure complexes of LCD-NAD⁺ with pipecolic acid (LCD-PA), lysine (LCD-LYS), and an intermediate (LCD-INT) as ligands at 2.26-, 2.00-, 2.17- and 1.80 Å resolutions, respectively. By combining computational studies, a NAD⁺-mediated “gate keeper” function involving NAD⁺/NADH and Arg49 that control the binding and entry of the ligand lysine was revealed, confirming the critical roles of NAD⁺ in the substrate access process. Further, in the gate opening form, a substrate delivery tunnel between ε-carboxyl moiety of Glu264 and the α-carboxyl moiety of Asp236 was observed through a comparison of four structure complexes. The LCD structure details including NAD⁺-mediated “gate keeper” and substrate tunnel may assist in the exploration the NAD⁺ function in this unique enzyme class, and in regulation of macrolide-pipecolate natural product synthesis.     

Direct binding studies of 125I-α-bungarotoxin and 3H-quinuclidinyl benzilate interaction with axon plasma membrane fragments. Evidence for nicotinic and muscarinic binding sites

The attachment of ¹²⁵I-α-bungarotoxin (BgTx) which is reportedly bound exclusively to “nicotinic” acetylcholine receptors, as well as ³H-atropine and ³H-3-quinuclidinyl benzilate (QNB), which reportedly bind exclusively to “muscarinic” receptors, was measured in isolated lobster axon plasma membrane fragments and in the soluble axonal protein fraction. ¹²⁵I-α-BgTx binding was also measured in lysolecithin-solubilized fragments. Binding assays were adapted for these studies and are described in detail. High affinity, saturable binding of all three ligands to membrane fragments was observed, as well as binding of BgTx to a macromolecule present in both the soluble fraction and the membrane fragments. These experiments provide the first evidence for the very tight binding of both “nicotinic” and “muscarinic” ligands in peripheral nerve.     

Phosphite Oxidation and the Preparation of Five-Membered Cyclic Phosphorylating Reagents Via the Phosphites

Abstract

The oxaziridines oxidize smoothly phosphites and other P(III) compounds; with chiral oxaziridines the oxidation is enantioselective. Some cyclic phosphorylating reagents are synthetized via the phosphites.

The five-membered cyclic phosphorylating reagents 1 show some promise for the development of automated solid phase syntheses of DNA segments by direct phosphorylation. With 0,N,S as P-connected ring atoms and at least one sp^2- carbon as a ring member, the computer program IGOR^1,2 generated 278 constitutional formulas 1. Since certain thiol phosphates have favorable cleavage properties³, la and lb are particularly interesting candidates to be synthetized⁴ and to be tested as five-membered cyclic phosphorylating reagents for oligonucleotide syntheses.     

The octant rule VIII.1 Variable temperature circular dichroism spectra of α-methyl- and methoxyl-substituted 5α-cholestan-2- and -3-ones

2α- and 2β-Methyl- and methoxy-5α-cholestan-3-ones and 3α- and 3β-methyl- and methoxy-5α-cholestan-2-ones have been synthesized and their variable temperature circular dichroism spectra obtained and analyzed. Rotatory strength (R) values for α-axial and equatorial CH₃ and OCH₃ groups are determined by difference measurements with the parent ketone. The (small) equatorial CH₃ R-values do not consistently follow the Octant Rule. Axial OCH₃ groups do not obey the Octant Rule (“anti-octant” behavior) and impose a bathochromic shift on the C = 0 n-π¹ transition. Equatorial OCH₃ groups do not consistently follow octant or “anti-octant” behavior.     

Synthesis, characterization and selective fluorescent zinc(II) sensing property of three Schiff-base compounds

Three Schiff-base compounds, 4-methyl-2,6-bis(1-(2-piperidinoethyl)iminomethyl)-phenol (HL¹), 4-methyl-2,6-bis(1-(2-pyrrolidinoethyl)- iminomethyl)-phenol (HL²) and (4-methyl-2,6-bis(1-(2-morpholinoethyl)iminomethyl)-phenol) (HL³), have been synthesized and characterized by elemental analysis, FT-IR, ¹H NMR, UV-Vis, electrospray ionisation mass and fluorescence spectroscopy. The emission quantum yield of the compounds increases by ca. 10-17 times by the addition of Zn²⁺ ion. Introduction of other metal ions of biological and environmental relevance either keeps unaltered or quenches the emission intensity of the ligands. This happens because of large binding constant (∼10⁴ M⁻¹) of the ligand with Zn²⁺ ion in acetonitrile. Each of the three ligands forms 1: 2 (ligand:metal) complexes which are characterized by single crystal X-ray diffraction analyses. This imposes rigidity to the ligand due to the complexation and, as a result, the radiative decay constant increases and the corresponding nonradiative decay parameter decreases. All of the ligands react with zinc chloride in acetonitrile to form dinuclear complexes which have been characterized by the elemental analysis, FT-IR, UV-Vis, electrospray ionisation mass spectroscopies and single crystal X-ray structural determinations.     

Interactions Between the Glutamate and Glycine Recognition Sites of the N-Methyl-d-Aspartate Receptor from Rat Brain, as Revealed from Radioligand Binding Studies

Abstract: The N-methyl-d -aspartate (NMDA) receptor possesses two distinct amino acid recognition sites, one for glutamate and one for glycine, which appear to be allosterically linked. Using rat cortex/hippocampus P₂ membranes we have investigated the effect of glutamate recognition site ligands on [³H]glycine (agonist) and (±)4-trans-2-car-boxy-5,7-dichloro-4-[³H]phenylaminocarbonylamino-1,2,3,4-tetrahydroquinoline ([³H]l -689,560; antagonist) binding to the glycine site and the effect of glycine recognition site ligands on l -[³H]glutamate (agonist), dl -3-(2-carboxypiperazin-4-yl)-[³H]propyl-1 -phosphonate ([³H]-CPP; “C-7” antagonist), and cis-4-phosphonomethyl-2-[³H]piperidine carboxylate ([³H]CGS-19755; “C-5” antagonist) binding to the glutamate site. “C-7” glutamate site antagonists partially inhibited [³H]l -689,560 binding but had no effect on [³H]glycine binding, whereas “C-5” antagonists partially inhibited the binding of both radioligands. Glycine, d -serine, and d -cycloserine partially inhibited [³H]CGS-19755 binding but had little effect on l -[³H]-glutamate or [³H]CPP binding, whereas the partial agonists (+)-3-amino-1-hydroxypyrrolid-2-one [(+)-HA-966], 3R-(+)cis-4-methyl-HA-966 (l -687,414), and 1-amino-1-carboxycyclobutane all enhanced [³H]CPP binding but had no effect on [³H]CGS-19755 binding, and (+)-HA-966 and l -687,414 inhibited l -[³H]glutamate binding. The association and dissociation rates of [³H]l -689,560 binding were decreased by CPP and d -2-amino-5-phosphonopentanoic acid (“C-5”). Saturation analysis of [³H]l -689,560 binding carried out at equilibrium showed that CPP had little effect on the affinity or number of [³H]l -689,560 binding sites. These results indicate that complex interactions occur between the glutamate and glycine recognition sites on the NMDA receptor. In addition, mechanisms other than allosterism may underlie some effects, and the possibility of a steric interaction between CPP and [³H]l -689,560 is discussed.     

Synthesis, immobilization, and solid-state NMR of new phosphine linkers with long alkyl chains

Monodentate and chelating phosphines with long alkyl chains, incorporating ethoxy- or chlorosilane functions for immobilizations, have been synthesized and fully characterized. The new compounds (EtO)₃Si(CH₂)_xPPh₂, Cl₂Si(CH₂CH₂PPh₂)₂, and (EtO)₂Si[(CH₂)_xPPh₂]₂ (x = 7, 11) could be prepared in high yields from cheap starting materials, and they have been characterized by multinuclear NMR spectroscopy and X-ray crystallography. The phosphines have been immobilized on silica in a well-defined manner, and the modified silicas have been studied by ³¹P and ²⁹Si solid-state NMR of the dry materials and of the suspensions.     

Insights into molecular interactions between CaM and its inhibitors from molecular dynamics simulations and experimental data

In order to contribute to the structural basis for rational design of calmodulin (CaM) inhibitors, we analyzed the interaction of CaM with 14 classic antagonists and two compounds that do not affect CaM, using docking and molecular dynamics (MD) simulations, and the data were compared to available experimental data. The Ca²⁺-CaM-Ligands complexes were simulated 20 ns, with CaM starting in the “open” and “closed” conformations. The analysis of the MD simulations provided insight into the conformational changes undergone by CaM during its interaction with these ligands. These simulations were used to predict the binding free energies (ΔG) from contributions ΔH and ΔS, giving useful information about CaM ligand binding thermodynamics. The ΔG predicted for the CaM’s inhibitors correlated well with available experimental data as the r² obtained was 0.76 and 0.82 for the group of xanthones. Additionally, valuable information is presented here: I) CaM has two preferred ligand binding sites in the open conformation known as site 1 and 4, II) CaM can bind ligands of diverse structural nature, III) the flexibility of CaM is reduced by the union of its ligands, leading to a reduction in the Ca²⁺-CaM entropy, IV) enthalpy dominates the molecular recognition process in the system Ca²⁺-CaM-Ligand, and V) the ligands making more extensive contact with the protein have higher affinity for Ca²⁺-CaM. Despite their limitations, docking and MD simulations in combination with experimental data continue to be excellent tools for research in pharmacology, toward a rational design of new drugs.     

Effects of ligand binding on the stability of aldo–keto reductases: Implications for stabilizer or destabilizer chaperones

Ligands such as enzyme inhibitors stabilize the native conformation of a protein upon binding to the native state, but some compounds destabilize the native conformation upon binding to the non‐native state. The former ligands are termed “stabilizer chaperones” and the latter ones “destabilizer chaperones.” Because the stabilization effects are essential for the medical chaperone (MC) hypothesis, here we have formulated a thermodynamic system consisting of a ligand and a protein in its native‐ and non‐native state. Using the differential scanning fluorimetry and the circular dichroism varying the urea concentration and temperature, we found that when the coenzyme NADP⁺ was absent, inhibitors such as isolithocholic acid stabilized the aldo–keto reductase AKR1A1 upon binding, which showed actually the three‐state folding, but destabilized AKR1B10. In contrast, in the presence of NADP⁺, they destabilized AKR1A1 and stabilized AKR1B10. To explain these phenomena, we decomposed the free energy of stabilization (ΔΔG) into its enthalpy (ΔΔH) and entropy (ΔΔS) components. Then we found that in a relatively unstable protein showing the three‐state folding, native conformation was stabilized by the negative ΔΔH in association with the negative ΔΔS, suggesting that the stabilizer chaperon decreases the conformational fluctuation of the target protein or increase its hydration. However, in other cases, ΔΔG was essentially determined by the delicate balance between ΔΔH and ΔΔS. The proposed thermodynamic formalism is applicable to the system including multiple ligands with allosteric interactions. These findings would promote the development of screening strategies for MCs to regulate the target conformations.     

Ruthenium(II) carbonyl chloride complexes containing pyridine-functionalised bidentate N-heterocyclic carbenes: Synthesis, structures, and impact of the carbene ligands on catalytic activities

A series of new ruthenium(II) carbonyl chloride complexes with pyridine-functionalised N-heterocyclic carbenes [Ru(Py-NHC)(CO)₂Cl₂], [Py-NHC = 3-methyl-1-(2-pyridyl)imidazol-2-ylidene, 1 (1a and 1b); 3-methyl-1-(2-picoyl)imidazol-2-ylidene, 2 (2a and 2b); 3-methyl-1-(2-pyridyl)benzimidazolin-2-ylidene, 3 (3b); 3-methyl-1-(2-picoyl)benzimidazolin-2-ylidene, 4 (4a and 4b); 1-methyl-4-(2-pyridyl)-1,2,4-triazoline-5-ylidene, 5 (5a and 5b)] have been prepared by transmetallation from the corresponding silver carbene complexes and characterized by NMR, IR spectroscopy and elemental analysis. In these complexes with bidentate Py-NHC ligands, one CO ligand is trans to the Py ligand. In 1a, 2a, 4a, and 5a, the NHC ligand is trans to the other CO ligand, thus leaving the two Cl⁻ ligands trans to each other. In 1b, 2b, 3b, 4b, and 5b, the NHC ligands are trans to one Cl⁻ ligand, and the two Cl⁻ ligands are cis to each other. The structures for 1b, 2b, 3b and 4b have been determined by single-crystal X-ray diffraction. These complexes are efficient catalysts in the transfer hydrogenation of acetophenone and their catalytic activities are found to be influenced by electronic effect of the N-heterocyclic carbene ligands.     

Nonhanded chirality in octahedral metal complexes

Chiral molecules can either be handed (i.e., "shoes") or nonhanded ("potatoes"). The only chiral ligand partition for tetrahedral metal complexes (or for a tetrahedral carbon atom such as that found in amino acids and other chiral biological molecules) is the fully unsymmetrical degree 6 partition (1(4)), which leads to handed metal complexes of the type MABCD with a lowest-degree chirality polynomial consisting of the product of all six possible linear factors of the type (s(i)-s(j)) where 1 < or = i,j < or = 4. The lowest-degree chiral ligand partitions for octahedral metal complexes are the degree 6 partitions (31(3)) and (2(3)) leading to handed chiral metal complexes of the types fac-MA(3)BCD and cis-MA(2)B(2)C(2). The form of the lowest-degree chirality polynomial for the (31(3)) chiral ligand partition of the octahedron resembles that of the (1(4)) chiral ligand partition of the tetrahedron, likewise with four different ligands. However, the form of the lowest-degree chirality polynomial for the (2(3)) chiral ligand partition of the octahedron corresponds to the square of the chirality polynomial of the (1(3)) chiral ligand partition of the polarized triangle, which likewise has three different ligands. Ligand partitions for octahedral metal complexes such as (2(2)1(2)), (21(4)), and (1(6)), which are less symmetrical than the lowest-degree chiral ligand partitions (31(3)) and (2(3)), lead to chiral octahedral metal complexes which are nonhanded. In such complexes, pairs of enantiomers can be interconverted by simple ligand interchanges without ever going through an achiral intermediate.