CD142 plays an important role in the mobility of colorectal cancer cells

ABSTRACT

CD142 promotes cell mobility, which contributes to carcinogenesis. However, the role of CD142 on colorectal cancer (CRC) mobility is unclear. This study showed that CD142 expression increased in CRC tissues, especially in those with invasion or metastasis. The positive sorting or overexpression of CD142 promoted the invasion and migration of CRC cells. Overall, CD142 may be responsible for CRC mobility.     

The polymorphism of a seed protein with phytohaemagglutinating activity in the cultivar ofPhaseolus vulgaris L.

In the cultivar ofPhaseolus vulgaris L. cv. Vainica Saavegra B a protein was found in the seeds having a more or less reduced electrophoretic mobility on the cathodic side in comparison with standard cultivars. This protein which has phytohaemagglutinating activity loses this property at a greatly decreased mobility, whereas at partially reduced mobility the phytohaemagglutinating activity is maintained. The protein with a partially decreased mobility is immunochemically identical with the protein having normal mobility, whilst the protein with strongly reduced mobility is immunochemically only partly similar.     

Going Where the Grass Is Greener: On the Study of Pastoral Mobility in Ferlo, Senegal

Based on a case study from Ferlo in Senegal, this paper discusses how pastoral mobility can be studied and understood with special emphasis on the use of GPS data. It has a dual objective: first, to investigate the methodological potential of using GPS data; second, to discuss the analytical use of GPS data for understanding mobility. The methodological potential for using GPS data is related to quantifying mobility and characterizing mobility patterns in space and time. Analytically, GPS data can be used in combination with qualitative information to make method triangulation. The GPS data can be used both prior to qualitative interviews to make informed questions about mobility and they can be used after qualitative investigations to illustrate points made or to reveal inconsistencies. The study shows that cattle walk about 5000 km per year (excluding night grazing) and different mobility patterns occur depending on the season. Issues such as the cattle complex and the notion of the independent, nomadic pastoralist are discussed in relation to pastoral mobility. Although cattle are of major importance to the Fulani, it is not important for them to walk with their animals, which are left to roam freely or supervised by paid herders. It is necessary to take into account all these issues if we want to go beyond the simple understanding of mobility as a means to find pasture and water.     

On the developmental regulation of acetylcholine receptor mobility in the Xenopus embryonic muscle membrane

We have investigated the possible mechanisms underlying a developmental decrease in acetylcholine (ACh) receptor mobility in the membrane of cultured, spherical, mononucleate Xenopus embryonic muscle cells (myoballs) utilizing the method of in situ electrophoresis. We observed that between 1 and 4 days in culture, a substantial redistribution of ACh receptors can be induced by the externally applied electric field which resulted in highly asymmetrical ACh sensitivities at the cathode- and anode-facing poles of the cell. Between 5 and 8 days in culture, the extent of ACh receptor redistribution induced by the field declined to a lower level. Pretreatment with cytoskeletal disrupting agents or with a disulfide bond reducing agent before in situ electrophoresis had no effect on 2-day-old cultures but enhanced receptor mobility in 6-day-old cultures. Pretreatment with Ca²⁺-Mg²⁺-free saline (CMF), which releases cell coat material in other systems, substantially increased receptor mobility when tested on days 2, 6, and 8. On day 6, pretreatment with CMF containing cytochalasin B (CB) and colchicine produced an even greater increase in receptor mobility as compared to treatment with CB and colchicine alone. Our findings suggest that the developmental decrease in ACh receptor mobility is accounted for by at least two different mechanisms: (1) An early-developing, CMF-sensitive restriction possibly mediated by the cell coat; (2) a later-developing restriction possibly dependent on cytoskeletal elements and disulfide linkages. The recovery of high ACh receptor mobility in the older cultures following some of the pretreatments indicates that factors determining ACh receptor mobility can arise from molecular interactions external to the lipid bilayer.     

Zone electrophoresis study of the bile lipoprotein complex.

Sucrose gradient column electrophoresis was performed with human hepatic and gallbladder bile. It is shown that bile phosphatidylcholines exhibit a more rapid anodic mobility than do bile salts and serum albumin. This high mobility of bile phosphatidylcholines is not due to the negatively charged lipids which are present in bile, i.e. bile salts or free fatty acids. It is demonstrated that phosphatidylcholines are associated with anionic polypeptides. Electrophoresis of reassociations between these purified polypeptides and dilaurylphosphatidylcholine showed that these anionic polypeptides are primarily responsible for the high anodic mobility of the bile lipoprotein complex. This work describes a procedure for the purification of the bile lipoprotein complex which can be useful for the study of other kinds of lipid-polypeptide associations.     

Dynamics of adhesion molecule domains on neutrophil membranes: surfing the dynamic cell topography

Lateral organization and mobility of adhesion molecules play a significant role in determining the avidity with which cells can bind to target cells or surfaces. Recently, we have shown that the lateral mobility of the principal adhesion molecules on neutrophils is lower for rolling associated adhesion molecules (RAAMs: L-selectin and PSGL-1) than for β₂ integrins (LFA-1 and Mac-1). Here we report that all four adhesion molecules exhibit distinct punctate distributions that are mobile on the cell surface. Using uniform illumination image correlation microscopy, we measure the lateral mobility of these topologically distinct domains. For all four molecules, we find that diffusion coefficients calculated from domain mobility agree with measurements we made previously using fluorescence recovery after photobleaching. This agreement indicates that the transport of receptors on the surface of the resting neutrophil is dominated by the lateral movement of domains rather than individual molecules. The diffusion of pre-assembled integrin domains to zones of neutrophil/endothelial contact may provide a mechanism to facilitate high avidity adhesion during the earliest stages of firm arrest.     

Mobile sequences in the pyruvate dehydrogenase complex, the E2 component, the catalytic domain and the 2-oxoglutarate dehydrogenase complex of Azotobacter vinelandii, as detected by 600 MHz 1H-NMR spectroscopy

600 MHz 1H-NMR spectroscopy demonstrates that the pyruvate dehydrogenase complex of Azotobacter vinelandii contains regions of the polypeptide chain with intramolecular mobility. This mobility is located in the E2 component and can probably be ascribed to alanine-proline-rich regions that link the lipoyl subdomains to each other as well as to the E1 and E3 binding domain. In the catalytic domain of E2, which is thought to form a compact, rigid core, also conformational flexibility is observed. It is conceivable that the N-terminal region of the catalytic domain, which contains many alanine residues, is responsible for the observed mobility. In the low-field region of the 1H-NMR spectrum of E2 specific resonances are found, which can be ascribed to mobile phenylalanine, histidine and/or tyrosine residues which are located in the E1 and E3 binding domain that links the lipoyl domain to the catalytic domain. In the 1H-NMR spectrum of the intact complex, these resonances cannot be observed, indicating a decreased mobility of the E1 and E3 binding domain.     

Characterization of the electrophoretic mobility mutation in the N protein of the tsD1 mutant of vesicular stomatitis virus New Jersey serotype

Some isolates of the temperature sensitive mutant tsD1 of complementation group D of vesicular stomatitis virus of New Jersey serotype have a nucleocapsid (N) protein which shows an increased electrophoretic mobility on sodium dodecyl sulfate--polyacrylamide gel electrophoresis (SDS-PAGE) when compared with wild type. Utilizing techniques involving specific chemical cleavage at tryptophan or methionine residues, as well as enzymatic cleavage with carboxypeptidases A and B, we have determined that residues near the carboxyterminus are responsible for the electrophoretic difference of the mutant protein. We have further shown that there are no differences in the tryptic peptides of the mutant compared with the wild type or a non-ts revertant in this region of the protein. We have identified a tryptic peptide located outside the relevant carboxyterminal region which is distinct in mutant and revertant. We conclude that the mutation producing the aberrant electrophoretic mobility of N protein of the tsD1 mutant is a missense point mutation located at least 40 amino acid residues from the carboxyterminus and which interacts with a more proximal carboxyregion so as to influence electrophoretic mobility on SDS-PAGE.     

Anomalously slow mobility of fluorescent lipid probes in the plasma membrane of the yeastSaccharomyces cerevisiae

Summary We measured the lateral mobility of two fluorescent lipid probes dioctadecylindocarbocyanine (dil) and tetramethyl rhodamine phosphatidylethanolamine (R-PE) in the plasma mem branesof Saccharomyces cerevisiae inol andopi 3 spheroplasts. These are well-characterized strains with mutations in the inositol and phosphatidylcholine biosynthetic pathways. Membrane phospholipid composition was altered by growing these mutants in the presence or absence of inositol and choline. Lateral mobil ity was measured by fluorescence recovery after photobleaching (FRAP). Microscopic fluorescence polarization employing CCD digital imaging produced an ordered orientation distribution of the lipid probe dil, confirming that at least one of the probes was largely incorporated into the bilayer membrane. Our results demonstrated anomalously slow mobility of both lipid probes for both mutants, regardless of whether the lipid composition was near normal or dramatically altered in relative composition of phosphatidylinositol and phosphatidylcholine. Trypsinization of the spheroplasts to remove surface proteins resulted in markedly increased lateral mobility. However, even in trypsinized sphero plasts, mobility was still somewhat lower than the mobility ob served in the membrane of mammalian cells, such as rat smooth muscle culture cells tested here for comparison.     

Molecular determinants of glucocorticoid receptor mobility in living cells: the importance of ligand affinity

The actions of glucocorticoids are mediated by the glucocorticoid receptor (GR), which is activated upon ligand binding, and can alter the expression of target genes either by transrepression or transactivation. We have applied FRAP (fluorescence recovery after photobleaching) to quantitatively assess the mobility of the yellow fluorescent protein (YFP)-tagged human GR alpha-isoform (hGRalpha) in the nucleus of transiently transfected COS-1 cells and to elucidate determinants of its mobility. Addition of the high-affinity agonist dexamethasone markedly decreases the mobility of the receptor in a concentration-dependent manner, whereas low-affinity ligands like corticosterone decrease the mobility to a much lesser extent. Analysis of other hGRalpha ligands differing in affinity suggests that it is the affinity of the ligand that is a major determinant of the decrease in mobility. Similar results were observed for two hGRalpha antagonists, the low-affinity antagonist ZK98299 and the high-affinity antagonist RU486. The effect of ligand affinity on mobility was confirmed with the hGRalpha mutant Q642V, which has an altered affinity for triamcinolone acetonide, dexamethasone, and corticosterone. Analysis of hGRalpha deletion mutants indicates that both the DNA-binding domain and the ligand-binding domain of the receptor are required for a maximal ligand-induced decrease in receptor mobility. Interestingly, the mobility of transfected hGRalpha differs among cell types. Finally, the proteasome inhibitor MG132 immobilizes a subpopulation of unliganded receptors, via a mechanism requiring the DNA-binding domain and the N-terminal part of the ligand-binding domain. Ligand binding makes the GR resistant to the immobilizing effect of MG132, and this effect depends on the affinity of the ligand. Our data suggest that ligand binding induces a conformational change of the receptor which is dependent on the affinity of the ligand. This altered conformation decreases the mobility of the receptor, probably by targeting the receptor to relatively immobile nuclear domains with which it transiently associates. In addition, this conformational change blocks immobilization of the receptor by MG132.     

Metal ion stimulators of PDE5 cause similar conformational changes in the enzyme as does cGMP or sildenafil

Purified PDE5 preparations exhibited variable proportions of two mobility forms (Bands 2 and 3) by native PAGE. Treatment of recombinant or native PDE5 with either cGMP or a substrate analog such as sildenafil, each of which is known to produce stimulatory effects on enzyme functions, caused a similar native PAGE band-shift to the lower mobility form (shift of Band 2 to Band 3). Incubation of PDE5 with Mg⁺⁺ or Mn⁺⁺, which is known to stimulate activity, caused a similar shift of the enzyme from Band 2 to Band 3 as did cGMP or sildenafil, but incubation with EDTA caused a time- and concentration-dependent shift to higher mobility (shift of Bands 2 and 3 to Band 1). A slow time course of the EDTA-induced band-shift suggested removal of a pre-bound metal ion (Me⁺⁺) with affinity of ~ 0.1 nM, which was similar to the previously determined affinity of PDE5 for Zn⁺⁺. The EDTA-treated enzyme (Band 1) could be shifted to Bands 2 and 3 by addition of cGMP, sildenafil, or Me⁺⁺; however, the cGMP- or sildenafil-induced shift was inhibited and the Me⁺⁺-induced shift was facilitated by treatment with EDTA. Results suggested that Me⁺⁺ removal from PDE5 produces a unique apoenzyme form (Band 1, more globular, negatively charged, or both) of PDE5 that can be partially converted to forms (Band 2, less globular or negatively charged, or both; and Band 3, more elongated/positively charged, or both) by addition of Me⁺⁺, substrate, or substrate analog. It is concluded that Me⁺⁺ causes conversion of PDE5 to similar conformational forms as caused by substrate or inhibitor binding to the catalytic site.     

Collective Chasing Behavior between Cooperators and Defectors in the Spatial Prisoner’s Dilemma

Cooperation is one of the essential factors for all biological organisms in major evolutionary transitions. Recent studies have investigated the effect of migration for the evolution of cooperation. However, little is known about whether and how an individuals’ cooperativeness coevolves with mobility. One possibility is that mobility enhances cooperation by enabling cooperators to escape from defectors and form clusters; the other possibility is that mobility inhibits cooperation by helping the defectors to catch and exploit the groups of cooperators. In this study we investigate the coevolutionary dynamics by using the prisoner’s dilemma game model on a lattice structure. The computer simulations demonstrate that natural selection maintains cooperation in the form of evolutionary chasing between the cooperators and defectors. First, cooperative groups grow and collectively move in the same direction. Then, mutant defectors emerge and invade the cooperative groups, after which the defectors exploit the cooperators. Then other cooperative groups emerge due to mutation and the cycle is repeated. Here, it is worth noting that, as a result of natural selection, the mobility evolves towards directional migration, but not to random or completely fixed migration. Furthermore, with directional migration, the rate of global population extinction is lower when compared with other cases without the evolution of mobility (i.e., when mobility is preset to random or fixed). These findings illustrate the coevolutionary dynamics of cooperation and mobility through the directional chasing between cooperators and defectors.     

40-kDa protein from thin filaments of the mussel Crenomytilus grayanus changes the conformation of F-actin during the ATPase cycle

Polarized fluorimetry was used to study in ghost muscle fibers the influence of a 40-kDa protein from the thin filaments of the mussel Crenomytilus grayanus on conformational changes of F-actin modified by the fluorescent probes 1,5-IAEDANS and FITC-phalloidin during myosin subfragment (S1) binding in the absence of nucleotides and in the presence of MgADP or MgATP. The fluorescence probes were rigidly bound with actin, which made the absorption and emission dipoles of the probes sensitive to changes in the orientation and mobility of both actin monomer and its subdomain-1 in thin filaments of the muscle fiber. On modeling different intermediate states of actomyosin, the orientation and mobility of oscillators of the dyes were changed discretely, which suggests multistep changes in the actin conformation during the cycle of ATP hydrolysis. The 40-kDa protein influenced the orientation and mobility of the fluorescent probes markedly, suppressing changes in their orientation and mobility in the absence of nucleotides and in the presence of MgADP, but enhancing these changes in the presence of MgATP. The calponin-like 40-kDa protein is supposed to prevent formation of the strong binding state of actomyosin in the absence of nucleotides and in the presence of MgADP but to activate formation of this state in the presence of MgATP.     

Urban stormwater runoff limits distribution of platypus

The platypus (Ornithorhynchus anatinus), like many other stream‐dependent species, is reportedly sensitive to catchment urbanization. However, the primary mechanism limiting its distribution in urban environments has not been identified. We created species distribution models for three platypus demographic classes: adult females (which are exclusively responsible for raising young), adult males (which are more mobile than females), and first‐year juveniles. Using live‐trapping data collected in Melbourne, Australia, we tested whether distributions of the three demographic classes were better predicted by catchment urban density (total imperviousness), by urban stormwater runoff (catchment attenuated imperviousness), or by stream size (catchment area). Two variants of each predictor variable were developed, one that accounted for platypus mobility, and one that did not. Female distribution was most plausibly predicted by stormwater runoff (accounting for mobility), with a steep decline in reporting rate from 0 to 10% attenuated imperviousness. Male distribution was equally plausibly predicted by stormwater runoff and urban density (both accounting for mobility), with a less steep and more uncertain decline with imperviousness than females. Juvenile distribution was most plausibly predicted by stream size (accounting for mobility), but both stormwater runoff and urban density (accounting for mobility) were nearly equally plausible predictors. The superior performance of models that accounted for mobility underscores the importance of accounting for this in species distribution models of highly mobile species. Platypus populations in urban areas are likely to be affected adversely by urban stormwater runoff conveyed by conventional drainage systems, with adult females more limited by runoff‐related impacts than adult males or juveniles. Urban platypus conservation efforts have generally focused on restoring riparian and in‐stream habitats on a local scale. This is unlikely to protect platypus from adverse impacts of urban stormwater runoff, which is most effectively managed at the catchment scale.     

A spin-label electron spin resonance study of the binding of mitochondrial creatine kinase to cardiolipin

The binding of the mitochondrial creatine kinase to aqueous dispersions of beef heart cardiolipin has been studied via the perturbation of the mobility of spin-labelled cardiolipin, using electron spin resonance (ESR) spectroscopy. In the presence of creatine kinase (1:1 protein/lipid ratio, by mass), the ESR spectra of cardiolipin labelled in a single acyl chain [n-(4,4-dimethyl-oxazolidinyl-N- oxy)stearoylcardiolipin] indicate a restriction of motion both at the C-5 and C-14 positions (n = 5, 14) of the lipid chains. The restriction in mobility was reversed by addition of phosphate or adriamycin, which are thought to inhibit the binding of creatine kinase to the mitochondrial membrane or to displace it from its binding site on the membrane. The effect of the protein on the chain mobility is consistent with surface binding of the protein; no positive evidence was obtained for penetration of the protein into the hydrophobic region of the membrane.     

How fast is the carousel? Direct indices of species mobility with examples from an Oklahoma grassland

Abstract. Current interest in small‐scale species dynamics has led to a proliferation of mobility indices. We advocate the use of direct measures of mobility such as immigration rate, extinction rate, residence time, and carousel time. We also demonstrate that the null expectation of cumulative frequency under different null models can be calculated explicitly. Species can depart from the commonly‐used ‘random reassignment’ model simply because of longevity, and not mobility per se. We therefore prefer a random immigration null model, which assumes that immigration locations are randomized. We examined mobility patterns of selected plant species, studied in 256 quadrats of each of four grains (ranging from 1/64 m² to 1 m²) in an Oklahoma grassland. Residence times and carousel times can be centuries or even millennia for some species. We explore the numerical and biological reasons for relationships between mobility statistics. Mobility statistics are fairly consistent among grains and years, although the residence times of species exhibit some subtle scale dependence. Species depart from a random immigration model very slightly – but the departure is consistent: species tend to re‐occupy previously vacated space more often than expected due to chance. We believe that the use of direct indices will facilitate the study of how species characteristics influence mobility.     

Comparing sources of mobility for modelling the epidemic spread of Zika virus in Colombia

Timely, accurate, and comparative data on human mobility is of paramount importance for epidemic preparedness and response, but generally not available or easily accessible. Mobile phone metadata, typically in the form of Call Detail Records (CDRs), represents a powerful source of information on human movements at an unprecedented scale. In this work, we investigate the potential benefits of harnessing aggregated CDR-derived mobility to predict the 2015-2016 Zika virus (ZIKV) outbreak in Colombia, when compared to other traditional data sources. To simulate the spread of ZIKV at sub-national level in Colombia, we employ a stochastic metapopulation epidemic model for vector-borne diseases. Our model integrates detailed data on the key drivers of ZIKV spread, including the spatial heterogeneity of the mosquito abundance, and the exposure of the population to the virus due to environmental and socio-economic factors. Given the same modelling settings (i.e. initial conditions and epidemiological parameters), we perform in-silico simulations for each mobility network and assess their ability in reproducing the local outbreak as reported by the official surveillance data. We assess the performance of our epidemic modelling approach in capturing the ZIKV outbreak both nationally and sub-nationally. Our model estimates are strongly correlated with the surveillance data at the country level (Pearson’s r = 0.92 for the CDR-informed network). Moreover, we found strong performance of the model estimates generated by the CDR-informed mobility networks in reproducing the local outbreak observed at the sub-national level. Compared to the CDR-informed networks, the performance of the other mobility networks is either comparatively similar or substantially lower, with no added value in predicting the local epidemic. This suggests that mobile phone data captures a better picture of human mobility patterns. This work contributes to the ongoing discussion on the value of aggregated mobility estimates from CDRs data that, with appropriate data protection and privacy safeguards, can be used for social impact applications and humanitarian action.     

Alterations of the electrophoretic mobility distribution of rat mast cells after immunologic activation.

Changes in the electrophoretic mobility distributions of rat serosal mast cells after immunologic activation have been measured using the laser Doppler technique of electrophoretic light scattering. Rat serosal mast cells of 98% purity isolated by isopycnic and velocity gradient sedimentation had a highly negative electrophoretic mobility which was unaffected by incubation with normal rabbit serum or, at 4 degrees C or in the absence of Ca+2, with rabbit anti-rat E(ab')2 antiserum. Immunologic activation of the cells with this antiserum in the presence of Ca+2 at 37 degrees C resulted in a dose- and time-dependent increase in the electrophoretic mobility. Thus at a 1:25 dilution of anti-F(ab')2 the mean and mode electrophoretic mobilities of the mast cell population increased 25 and 21%, respectively. The width of the electrophoretic mobility distribution also increased with activation, indicating a heterogeneous response of the mast cells in the population. The increase in electrophoretic mobility after immunologic activation is not diminished by treatment of the cells with 1 M NaCl to solubilize adsorbed mast cell granule or heparin.     

Probing the electrostatic shielding of DNA with capillary electrophoresis

The free solution mobility of a 20-bp double-stranded DNA oligomer has been measured in diethylmalonate (DM) and Tris-acetate buffers, with and without added NaCl or TrisCl. DM buffers have the advantage that the buffering ion is anionic, so the cation composition in the solution can be varied at will. The results indicate that the free solution mobility of DNA decreases linearly with the logarithm of ionic strength when the ionic strength is increased by increasing the buffer concentration. The mobility also decreases linearly with the logarithm of ionic strength when NaCl is added to NaDM buffer or TrisCl is added to TrisDM buffer. Nonlinear effects are observed if the counterion in the added salt differs from the counterion in the buffer. The dependence of the mobility on ionic strength cannot be predicted using the Henry, Debye-Hückel-Onsager, or Pitts equations for electrophoresis. However, the mobilities observed in all buffer and buffer/salt solutions can be predicted within approximately 20% by the Manning equation for electrophoresis, using no adjustable parameters. The results suggest that the electrostatic shielding of DNA is determined not only by the relative concentrations of the various ions in the solution, but also by their equivalent conductivities.     

Capillary electrophoresis monitors changes in the electrophoretic behavior of mitochondrial preparations

The presence of electrical charges on the surface of an organelle is the source of the organelle's electrophoretic mobility. Recently, we reported that capillary electrophoresis with laser-induced fluorescence detection (CE-LIF) can be used to determine the electrophoretic mobility of individual mitochondria. Here, we describe the use of CE-LIF to monitor changes in the electrophoretic mobility distributions of: (i). mitochondria isolated from cultured NS-1 mouse hybridoma cells disrupted by nitrogen cavitation or mechanical homogenization; (ii). mitochondria isolated from rat liver and purified by gradient centrifugation before and after being frozen in liquid nitrogen; and (iii). mitochondria chemically transformed into mitoplasts. These results indicate that the organelle electrophoretic mobility observed by researchers is affected by preparation procedures and that CE-LIF is a complementary technique for monitoring the quality of mitochondrial preparations.