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Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56,419 completely sequenced and manually annotated full-length cDNAs
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Takeda J Suzuki Y Nakao M Barrero RA Koyanagi KO Jin L Motono C Hata H Isogai T Nagai K Otsuki T Kuryshev V Shionyu M Yura K Go M Thierry-Mieg J Thierry-Mieg D Wiemann S Nomura N Sugano S Gojobori T Imanishi T 《Nucleic acids research》2006,34(14):3917-3928
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Takeda J Suzuki Y Sakate R Sato Y Seki M Irie T Takeuchi N Ueda T Nakao M Sugano S Gojobori T Imanishi T 《Nucleic acids research》2008,36(20):6386-6395
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【目的】蜜蜂球囊菌(Ascosphaera apis)是一种专性侵染蜜蜂幼虫的致死性真菌病原。本研究旨在利用PacBio单分子实时(singlemoleculereal-time,SMRT)测序技术对蜜蜂球囊菌孢子(AaS)中基因的可变剪切(alternative splicing,AS)和可变多聚腺苷酸化(alternative polyadenylation,APA)以及长链非编码RNA (long non-coding RNA,lncRNA)进行鉴定和分析,进而揭示蜜蜂球囊菌孢子中转录组的复杂性。【方法】采用Suppa软件对蜜蜂球囊菌孢子中基因的AS事件进行鉴定。通过RT-PCR对不同类型的AS事件进行验证。采用TAPIS pipeline对蜜蜂球囊菌孢子基因的APA位点进行鉴定。利用MEME软件分析孢子全长转录本的poly(A)剪接位点上游50bp的序列特征并鉴定motif。联用CPC和CNCI软件和比对Swiss-prot数据库的方法预测lncRNA,取三者的交集作为高可信度的lncRNA集合。进一步比较lncRNA和mRNA的转录本长度,外显子数量与长度,内含子长度,GC含... 相似文献
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A white spruce gene catalog for conifer genome analyses 总被引:1,自引:0,他引:1
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Gautier Koscielny Vincent Le Texier Chellappa Gopalakrishnan Vasudev Kumanduri Jean-Jack Riethoven Francesco Nardone Eleanor Stanley Christine Fallsehr Oliver Hofmann Meelis Kull Eoghan Harrington Stéphanie Boué Eduardo Eyras Mireya Plass Fabrice Lopez William Ritchie Virginie Moucadel Takeshi Ara Heike Pospisil Alexander Herrmann Daniel Gautheret 《Genomics》2009,93(3):213-220
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