Genetic diversity analysis of common beans based on molecular markers

A core collection of the common bean (Phaseolus vulgaris L.), representing genetic diversity in the entire Mexican holding, is kept at the INIFAP (Instituto Nacional de Investigaciones Forestales, Agricolas y Pecuarias, Mexico) Germplasm Bank. After evaluation, the genetic structure of this collection (200 accessions) was compared with that of landraces from the states of Oaxaca, Chiapas and Veracruz (10 genotypes from each), as well as a further 10 cultivars, by means of four amplified fragment length polymorphisms (AFLP) +3/+3 primer combinations and seven simple sequence repeats (SSR) loci, in order to define genetic diversity, variability and mutual relationships. Data underwent cluster (UPGMA) and molecular variance (AMOVA) analyses. AFLP analysis produced 530 bands (88.5% polymorphic) while SSR primers amplified 174 alleles, all polymorphic (8.2 alleles per locus). AFLP indicated that the highest genetic diversity was to be found in ten commercial-seed classes from two major groups of accessions from Central Mexico and Chiapas, which seems to be an important center of diversity in the south. A third group included genotypes from Nueva Granada, Mesoamerica, Jalisco and Durango races. Here, SSR analysis indicated a reduced number of shared haplotypes among accessions, whereas the highest genetic components of AMOVA variation were found within accessions. Genetic diversity observed in the common-bean core collection represents an important sample of the total Phaseolus genetic variability at the main Germplasm Bank of INIFAP. Molecular marker strategies could contribute to a better understanding of the genetic structure of the core collection as well as to its improvement and validation.     

Evidence for the origin of chayote,sechium edule (Cucurbitaceae)

Sechium edule (Jacq.) Sw. (Cucurbitaceae), a one-seeded squash most popular in Latin America, is cultivated worldwide in tropical and subtropical climates. In the past, a Mexican center of origin for chayote has been inferred mainly from linguistic data, but to use this argument correctly, relevant indigenous terms should be interpreted. Evidence from historical documents indicates pre-Columbian Aztecs used chayote in Mexico, but the lack of documentation from other countries does not constitute proof that the plant was absent. Chayote’s center of genetic diversity suggests it was first domesticated in Mexico and Central America, but this variation could have been secondarily derived. However inconclusive these three lines of evidence are, they do converge on the same conclusion supported by new botanical evidence. Chayote’s closest wild relative,S. compositum, from Mexico and Guatemala, and two potentially ancestral forms of chayote recently discovered outside cultivation in Mexico, demarcate Mexico and Guatemala as the most likely center of origin for this ancient crop. S. edule (Cucurbitaceae) es una calabaza de una semilla muy popular en América Latina, cultivada en los trópicos y subtrópicos mundialmente. La información linguistica sugiere a México como el centro de origen del chayote, pero para usar fuente de información se deben interpretar correctamente datos completos provenientes de fuentes indígenas apropiadas. El uso del chayote por los Aztecas precolombinos en México se mantiene como otra fuente de evidencia aún inconclusa por falta de documentación histórica proveniente de otros paises, aunque o tampoco constituye prueba de su ausencia. El centro de diversidad genética sugiere que el chayote fue originalmente domesticado en México y Centro América, pero esta variación podria haber sido secundariamente derivada. Tan inconclusas como son estas tres fuentes de evidencia, convergen con resultados favorecidos por nueva evidencia botánica. La especie silvestre más cercana al chayote,S. compositum, descubierta recientemente en México, sugiere a México y Guatemala como centros de origen para esta cosecha de antigua origen.

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Presented at the Symposium on New Perspectives on the Origin of Neotropical Crops, twenty-ninth annual Meeting, Society for Economic Botany; symposium organized by Peter K. Bretting.     

Horizontal reactor for the continuous production of ethanol by yeasts immobilized in pectin

Summary Yeast cells (Saccharomyces cerevisiae) were immobilized in pectin gel, incubated 12 h at 30°C and then used for the continuous production of ethanol employing a wedge-shaped horizontal reactor and sugar cane molasses as the carbon source. Under steady state conditions the mean residence time was 1.6 h and the volumetric productivity 40 g EtOH/hl. The gas evolved was easily released. Successive batch incubation in a synthetic medium substantially restored the fermentative capacity of the beads already used in the continuous assay.Departamento de Biotecnología y Bioingeniería, Centro de Investigación y de Estudios Avanzados del IPN, México D.F.Member of the Scientific Researcher's Career of the Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Argentina.     

Coupled saccharification and fermentation of pre-treated Eucalyptus wood: a simple kinetic model

Coupled saccharification and fermentation of Eucalyptus globulus wood, pre-treated by acid hydrolysis and sodium hypochlorite, was carried out in two column reactors: one for enzymatic hydrolysis of the substrate at 50°C and the other for fermentation of sugars with calcium alginate-immobilized Saccharomyces cerevisiae at 30°C. A buffered solution containing cellulases at pH 4.8 was recycled through both reactors. The maximum yields were about 0.26 g ethanol per g of substrate. The results were reproduced reasonably well using a simple kinetic model consisting of two successive pseudo-first-order reactions.C. Albornoz and D. M. Ferrari are with the Centro de Investigaciones Tecnológicas (CIT), Administración Nacional de Combustibles, Alcohol y Portland (ANCAP), Pando, Canelones, C.P. 91000, Uruguay. S. Blanco and G. Ellenrieder are with Instituto de Investigaciones para la Industria Química (INIQUI), Universidad Nacional de Salta (UNSa), Buenos Aires 177, 4400 Salta, Argentina.     

Effect of methyl-cyclodextrin on adenylate cyclase activity of Bordetella pertussis

The activity of Bordetella pertussis extracytoplasmic adenylate cyclase (AC) decreased during decelerating growth phase in a Stainer-Scholte medium. Neither proteolytic activity nor virulence variation (phase variation; antigenic modulation) appears to be responsible for the observed activity fall. The addition of methyl--cyclo-dextrin enhances AC activity and prevents the inhibition of AC activity by fatty acids. Cyclodextrin could entrap inhibitors increasing in this way the AC activity. These results show that the inclusion of cyclodextrin in the culture medium increases the AC activity.D.F. Hozbor and O.M. Yantorno are with the Centro de Investigación y Desarrollo en Fermentaciones Industriales (CINDEFI), Facultad de Ciencias Exactas, Universidad Nacional de La Plata, 47 y 115, (1900) La Plata, Argentina. A. Samo is with the Comisión de Investigaciones Cientificas de la Provincia de Buenos Aires.     

中国玉米遗传单一性的经济影响

广泛采用少数优良种质资源,可能会引起作物遗传多样性下降,降低品种的抗病和抗逆能力,影响作物的产量。本研究采用系谱分析方法,研究了我国20个主产省玉米遗传单一性的变化及其对我国玉米生产的影响。结果表明,遗传单一性与玉米单产之间呈显著的负相关关系：遗传单一性每增加1%,玉米平均单产将降低13%;研究同时也表明遗传单一性和品种单一性是两个相互独立的变量,品种单一性不一定导致遗传基础的单一性。政府应从调节育种人员行为上制定相应的政策,防止遗传基础单一化,在增加作物遗传多样性的同时,选育优质高产的品种。     

Book Reviews

Book reviewed in this article:
ARCHEOLOGY: Papers of the New World Archaeological Foundation
No. 6. The Carved Human Femurs from Tomb 1, Chiapa de Corzo, Chiapas, Mexico . P ierre A grinier
No. 7. Archaeological Explorations in the Region of the Frailesca, Chiapas, Mexico . C arlos N avarrete
Nos. 8–11. Excavations at Chiapa de Corzo, Chiapas, Mexico . G areth W. L owe
No. 12. Mound 5 and Minor Excavations, Chiapa de Corzo, Chiapas, Mexico . G areth W. L owe
No. 13. Ceramic Stratigraphy at Santa Cruz, Chiapas, Mexico . W illiam T. S anders
No. 14. The Santa Marta Rock Shelter, Ocozocoautla, Chiapas, Mexico . R ichard S. M ac N eish and F redrick A. P eterson     

Keepers of maize in Chiapas,Mexico

This study concerns the knowledge and selection of biological diversity of maize (Zea mays) within its center of domestication in Mesoamerica. Maize farmers in central Chiapas of Southern México keep local varieties (landraces) belonging to six races and four race mixtures. Fifteen local varieties are recognized. In spite of widespread adoption of a modern, high yielding variety, maize farmers continue to select local varieties for specific soils and because of agronomic and use criteria. Farmers maintain maize varieties primarily through seed selection. Spatial and temporal separation do not seem sufficient to maintain varieties. The management of improved varieties can lead from a uniform population to a heterogeneous one as hybridization with local maize populations occurs.     

Projecting the effects of climate change on the distribution of maize races and their wild relatives in Mexico

Climate change is expected to be a significant threat to biodiversity, including crop diversity at centers of origin and diversification. As a way to avoid food scarcity in the future, it is important to have a better understanding of the possible impacts of climate change on crops. We evaluated these impacts on maize, one of the most important crops worldwide, and its wild relatives Tripsacum and Teocintes. Maize is the staple crop in Mexico and Mesoamerica, and there are currently about 59 described races in Mexico, which is considered its center of origin . In this study, we modeled the distribution of maize races and its wild relatives in Mexico for the present and for two time periods in the future (2030 and 2050), to identify the potentially most vulnerable taxa and geographic regions in the face of climate change. Bioclimatic distribution of crops has seldom been modeled, probably because social and cultural factors play an important role on crop suitability. Nonetheless, rainfall and temperature still represent a major influence on crop distribution pattern, particularly in rainfed crop systems under traditional agrotechnology. Such is the case of Mexican maize races and consequently, climate change impacts can be expected. Our findings generally show significant reductions of potential distribution areas by 2030 and 2050 in most cases. However, future projections of each race show contrasting responses to climatic scenarios. Several evaluated races show new potential distribution areas in the future, suggesting that proper management may favor diversity conservation. Modeled distributions of Tripsacum species and Teocintes indicate more severe impacts compared with maize races. Our projections lead to in situ and ex situ conservation recommended actions to guarantee the preservation of the genetic diversity of Mexican maize.     

The ethnoecology of maize variety management: A case study from Mexico

This paper presents a case study of the relationship between farmers' knowledge of maize varieties and their selection and management of these varieties under conditions of technological change. Research for this paper was done among Spanish-speaking small farmers in an ejidoof central Chiapas, Mexico. This ejido is well integrated into the market, and the use of modem technologies is widespread. This research demonstrates that farmers have an extensive and widely shared knowledge of their maize varieties. This knowledge reflects objective maize characteristics. Variation occurs in the farmers' selection and management of maize varieties, but on average the variation deviates from a random pattern in the direction predicted by the farmers' knowledge base. They have incorporated the technological changes brought about by development into their knowledge base. Farmers maintain maize varieties with contrasting traits, and their knowledge base provides important information about which traits and constraints are important to them.     

Mapping the Diversity of Maize Races in Mexico

Traditional landraces of maize are cultivated throughout more than one-half of Mexico''s cropland. Efforts to organize in situ conservation of this important genetic resource have been limited by the lack of knowledge of regional diversity patterns. We used recent and historic collections of maize classified for race type to determine biogeographic regions and centers of landrace diversity. We also analyzed how diversity has changed over the last sixty years. Based on racial composition of maize we found that Mexico can be divided into 11 biogeographic regions. Six of these biogeographic regions are in the center and west of the country and contain more than 90% of the reported samples for 38 of the 47 races studied; these six regions are also the most diverse. We found no evidence of rapid overall decline in landrace diversity for this period. However, several races are now less frequently reported and two regions seem to support lower diversity than in previous collection periods. Our results are consistent with a previous hypothesis for diversification centers and for migration routes of original maize populations merging in western central Mexico. We provide maps of regional diversity patterns and landrace based biogeographic regions that may guide efforts to conserve maize genetic resources.     

Genetic variation in Vanilla planifolia (Orchidaceae)

Vanilla planifolia, a highly prized tropical crop, produces commercial, vanilla. We investigated RAPD genetic diversity and geographical structure within V. planifolia. Multivariate analyses revealed three separate geographical groups of V. planifolia: a) a Costa Rican group; b) a Mexican group consisting only of cultivated plants from north of the Trans-Mexican Volcanic Belt; and c) a Mexican group from Oaxaca, Chiapas, and Quintana Roo, which are wild and wild-sourced cultivated plants. It appears likely that human action has resulted in movement of northern Mexican plants into the region south of the Volcanic Belt. When supposed translocants are included, a significantly higher genetic diversity is observed south of the Volcanic Belt compared to northern Mexico. Furthermore, cultivar names used in V. planifolia do not appear to reflect genetically defined groups.     

Genetic structure and mating systems in wild and cultivated populations of Phaseolus coccineus and P. vulgaris (Fabaceae)

We present a study of the genetic variation, genetic structure, and outcrossing rate of two wild populations of Phaseolus coccineus ssp. formosus (both from Central Mexico), two cultivated populations of P. coccineus ssp. coccineus (one from Central Mexico, the other from Chiapas), and one cultivated population of P. vulgaris (from Central Mexico), using seven electrophorectic loci. All the populations of P. coccineus showed high and similar levels of genetic variation, without differences among wild and cultivated populations (H ranged between 0.187 to 0.271). In contrast, P. vulgaris has low levels of genetic variation (H = 0.041). The three P. coccineus populations from Central Mexico were genetically similar, while the cultivated P. coccineus from Chiapas and the cultivated P. vulgaris from Central Mexico were very different. In all the loci and all the populations for both species, the fixation indices (F) were positive and differed significantly from random mating expectation in 59% of the cases for P. coccineus. The highest F was the estimated for P. vulgaris. For P. coccineus, the multilocus outcrossing rate estimates ranged from 0.592 to 0.698, and these did not differ significantly among populations. For P. coccineus, we also estimated the outcrossing rate for each of 60 different families, showing great variation, with a majority of families with a t between 0.8 and 1, but a substantial fraction of the families with a t as low as 0.12–0.20. The domestication process has neither eroded the levels of genetic variation of the cultivated populations of P. coccineus nor changed its mating system.     

Physalis (Solanaceae) and allied genera: Tzeltalia, a new genus from the highlands of southern Mexico and northwestern Guatemala

A morphological analysis ofPhysalis and several closely related genera, with emphasis on a group of species known as “atypicalPhysalis,” showed that two of the atypical species are better treated as a distinct genus.Tzeltalia is described and two new combinations are made:T. amphitricha andT. calidaria. Restricted to the highlands of Chiapas, Mexico, and adjacent Guatemala,Tzeltalia is distinguished fromPhysalis by a combination of characters including shrubby habit; fasciculate flowers; lobed corolla; scabrate pollen; and non-invaginated, partially open, coriaceous, and reticulate-veined fruiting calyx.

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Resumen  El análisis de un grupo de especies atípicas dePhysalis y otros géneros relacionados demostró que dos especies deben considerarse como otro género. Se describeTzeltalia, un género restringido a los altos de Chiapas, México, y Guatemala y se hacen dos nuevas combinaciones,T. amphitricha yT. calidaria.Tzeltalia se distingue dePhysalis por una combinación de caracteres que incluyen un habito arbustivo, flores fasciculadas, corola lobulada, polen escabroso, cáliz del fruto no invaginado, parcialmente abierto, coriáceo y con venación reticulada.

     

Diversity in global maize germplasm: Characterization and utilization

Maize (Zea mays L.) is not only of worldwide importance as a food, feed and as a source of diverse industrially important products, but is also a model genetic organism with immense genetic diversity. Although it was first domesticated in Mexico, maize landraces are widely found across the continents. Several studies in Mexico and other countries highlighted the genetic variability in the maize germplasm. Applications of molecular markers, particularly in the last two decades, have led to new insights into the patterns of genetic diversity in maize globally, including landraces as well as wild relatives (especially teosintes) in Latin America, helping in tracking the migration routes of maize from the centers of origin, and understanding the fate of genetic diversity during maize domestication. The genome sequencing of B73 (a highly popular US Corn Belt inbred) and Palomero (a popcorn landrace in Mexico) in the recent years are important landmarks in maize research, with significant implications to our understanding of the maize genome organization and evolution. Next-generation sequencing and high-throughput genotyping platforms promise to further revolutionize our understanding of genetic diversity and for designing strategies to utilize the genomic information for maize improvement. However, the major limiting factor to exploit the genetic diversity in crops like maize is no longer genotyping, but high-throughput and precision phenotyping. There is an urgent need to establish a global phenotyping network for comprehensive and efficient characterization of maize germplasm for an array of target traits, particularly for biotic and abiotic stress tolerance and nutritional quality. ??Seeds of Discovery?? (SeeD), a novel initiative by CIMMYT with financial support from the Mexican Government for generating international public goods, has initiated intensive exploration of phenotypic and molecular diversity of maize germplasm conserved in the CIMMYT Gene Bank; this is expected to aid in effective identification and use of novel alleles and haplotypes for maize improvement. Multi-institutional efforts are required at the global level to systematically explore the maize germplasm to diversify the genetic base of elite breeding materials, create novel varieties and counter the effects of global climate changes.     

Assessing occupancy and habitat connectivity for Baird’s tapir to establish conservation priorities in the Sierra Madre de Chiapas,Mexico

Baird’s tapir (Tapirus bairdii) is the largest native mammal that inhabits the Neotropics, and it is enlisted as Endangered by the IUCN Red List. The historic distribution of this species included the area from southern Mexico to northern Colombia. However, its distribution and populations have been reduced drastically during the past 30 years. The main threats for Baird’s tapir are the direct persecution for subsistence hunting, habitat destruction, and habitat fragmentation. In this study, we used camera traps and occupancy models to identify the landscape characteristics that were associated with the occurrence of tapirs in the Sierra Madre de Chiapas, which is one of the most important populations of the species in Mexico, with the aim to identify areas with habitat suitability for the species. We used our best occupancy model to generate a resistance matrix to develop a model of habitat connectivity using Circuit Theory. According to the best occupancy model, the most suitable areas for this species were the forested areas located at the highest elevations of the mountain ranges that provided rugged terrain. We identified three critical corridors to allow for the connectivity of tapir populations in the Sierra Madre de Chiapas, and one of these corridors provides connectivity between this population and the population in the Ocote Biosphere Reserve. With this approach, we propose a conservation strategy for the species that incorporates a more realistic and detailed scheme of Baird’s tapir occurrence in the Sierra Madre de Chiapas region. Priority actions to conserve tapirs in the Sierra Madre de Chiapas over the long term include ensuring the complete protection of prime habitat for the species, improved connectivity by protecting forest cover, implementation mitigation measures in areas where paved roads interrupt connectivity of populations, and eradicating poaching of the species in the region completely.     

New polymorphic microsatellite loci for Theobroma cacao: isolation and characterization of microsatellites from enriched genomic libraries

Seventeen polymorphic microsatellite markers were isolated from enriched genomic libraries for Theobroma cacao, providing additional tools for studying the genetic diversity and map saturation of this species. These markers were characterized in 32 accessions of the T. cacao germplasm collection from the Centro de Pesquisas do Cacau. The number of alleles at each locus varied from 2 to 8, with an average of 4.41 alleles per locus. The polymorphism information content varied from 0.060 to 0.695, with an average of 0.333. The markers characterized in this study will be employed in map saturation studies and diversity assessments of cacao genotypes.     

Predation of wild spider monkeys at La Macarena,Colombia

The killing of an adult male spider monkey (Ateles belzebuth ) by a jaguar (Panthera onca) and a predation attempt by a puma (Felis concolor) on an adult female spider monkey have been observed at the CIEM (Centro de Investigaciones Ecológicas La Macarena), La Macarena, Colombia. These incidents occurred directly in front of an observer, even though it is said that predation under direct observation on any type of primate rarely occurs. On the basis of a review of the literature, and the observations reported here, we suggest that jaguars and pumas are likely to be the only significant potential predators on adult spider monkeys, probably because of their large body size.     

Ordination and classification of vegetation along an altitudinal gradient in the Venezuelan páramos

By means of ordination and classification techniques, the relationships between climate, soils, human activities and vegetation along an altitudinal gradient of the Venezuelan páramos are analyzed and interpreted. The altitudinal gradient chosen is characterized by decrease of temperature, precipitation, soil fertility, soil water-holding capacity, and plant cover as altitude increases. The ordination results suggest vegetation changes to be primarily related to environmental changes occurring with altitude, and secondly to disturbances caused mainly by grazing. Some results point toward a disjunction in the vegetational gradient occurring at ca. 3 500 m.a.s.l. and separating low and high páramo. This disjunction might have been caused by the glacial history of the páramos and the occurrence of frequent night-frosts.The soil samples were kindly analyzed by the Laboratorio de Edafologia, Centro Nacional de Investigaciones Agropecuarias. Help in plant identification was generously obtained from the specialists of Instituto Botánico, Instituto Nacional de Parques, Caracas.Nomenclature follows Vareschi (1970).Acknowledgements: This work was supported by the Decanato de Investigaciones, Universidad Simón Bolivar. I wish to thank A. Pacheco for help in the field sampling. Dr O. Arenas help was invaluable in the mathematical treatment of the data. Drs A. Vivas and J. M. B. Smith provided useful criticism to an earlier version of this work.     

The distribution of amphibian species richness in protected areas of Chiapas,Mexico

Due to the current environmental crisis, many animal species face extinction problems. Amphibian populations have been affected by this crisis. Our goal is to study amphibian species diversity in Chiapas, which has 7.6% of the endemic amphibians in Mexico and 53 protected areas. Only 58% of the protected areas have management plans or information on their resident amphibians. We aim to determine the extent of protection provided by the network of natural areas for the conservation of amphibian species in the state and to discuss the effectiveness of this protection. Therefore, we compiled a georeferenced database of 112 amphibian species in Chiapas to create each distribution model. In addition, we carried out representativeness, beta diversity, and species richness analyses. As a result, we obtained a high degree of representativeness for the records and species distribution models. However, we found a decrease in the richness of amphibians involving 20% of total species, 13% of endemics, 18% threatened according to NOM-059, and 31% threatened according to IUCN between 1800 and 2020 and 1980–2020. We also identified two biodiversity hotspots in the Sierra Madre de Chiapas and the Northern Highlands physiographic regions. Finally, based on potential distributions, we found more endemic and threatened species outside protected natural areas than inside them. Our results give a broader picture of how amphibian richness is distributed in Chiapas. This information can help to prioritize conservation efforts toward those areas rich in threatened or endemic species, such as the Northern Mountains Hotspot we identified in northern Chiapas.