The phylogenetic position of toadfishes (order Batrachoidiformes) in the higher ray-finned fish as inferred from partitioned Bayesian analysis of 102 whole mitochondrial genome sequences

In a previous study based on 100 whole mitochondrial genome (mitogenome) sequences, we sought to provide a new perspective on the ordinal relationships of higher ray-finned fish (Actinopterygii). The study left unexplored the phylogenetic position of toadfishes (order Batrachoidiformes), as data were unavailable owing to technical difficulties. In the present study, we successfully determined mitogenomic sequences for two toadfish species ( Batrachomoeus trispinosus and Porichthys myriaster ) and found that the difficulties resulted from unusual gene arrangements and associated repetitive non-coding sequences. Unambiguously aligned, concatenated mitogenomic sequences (13 461 bp) from 102 higher actinopterygians (excluding the ND6 gene and control region) were divided into five partitions (1st, 2nd and 3rd codon positions of the protein-coding genes, tRNA genes and rRNA genes) and partitioned Bayesian analyses were conducted. The resultant phylogenies strongly suggest that the toadfishes are not members of relatively primitive higher actinopterygians (Paracanthopterygii), but belong to a crown group of actinopterygians (Percomorpha), as was demonstrated for ophidiiform eels (Ophidiiformes) and anglerfishes (Lophiiformes) in the previous study. We propose revised limits of major unranked categories for higher actinopterygians and a new name (Berycomorpha) for a clade comprising two reciprocally paraphyletic orders (Beryciformes and Stephanoberyciformes) based on the present mitogenomic phylogenies.  © 2005 The Linnean Society of London, Biological Journal of the Linnean Society , 2005, 85 , 289–306.     

Cranial morphology of the Stellate Sturgeon,Acipenser stellatus Pallas 1771 (Acipenseriformes,Acipenseridae), with notes on the skulls of other sturgeons

Extant members of Acipenseridae are generally classified in four genera: Scaphirhynchus, Pseudoscaphirhynchus, Huso and “Acipenser,” which is widely recognized to be paraphyletic. Advances have been made in understanding the systematic relationships among sturgeons based on both morphological and molecular data. Analysis of mitochondrial DNA data suggested that Pseudoscaphirhynchus should be regarded as nested within “Acipenser,” specifically as sister group to the Stellate Sturgeon, A. stellatus. Recent morphological analyses also recovered this relationship, supported by a number of osteological synapomorphies, although these results were based on few and relatively small individuals. Here we describe the anatomy of the skull of A. stellatus based on newly prepared specimens of adult individuals, as well as examination of a large number of preserved individuals representing a broad range of ontogenetic stages. We present new anatomical data from all regions of the skull (dermatocranium, neurocranium, viscerocranium) and offer interpretations of these and other characters. In particular, we describe the allometry in the snout of A. stellatus, which undergoes substantial elongation relative to other sturgeons. Aspects of the skull of A. stellatus are compared to other members of the family, specifically the course of the occipital sensory canal and the morphology and distribution of cranial spines.     

Pichia delftensis sp.n.

Pichia delftensis is described as a new species. It was isolated from a naturally fermented apple juice that had been left on the yeast deposit. This film yeast differs fromP. membranaefaciens in its positive assimilation of hexitols.     

Etelis boweni sp. nov., a new cryptic deepwater eteline snapper from the Indo-Pacific (Perciformes: Lutjanidae)

A new species of Etelis is described based on 16 specimens collected from the Red Sea and Western Australia, with confirmed genetic records throughout the Indo-West Pacific. It is similar to and was often misidentified as Etelis carbunculus Cuvier, with both species sharing the diagnostic character of low number of developed gill rakers. Nonetheless, the two species are genetically divergent and differ morphologically in adult body length; proportions of eye, snout, cheek and caudal fin; shape of head, opercular spine and sagittal otolith; and coloration of the tip of the upper caudal fin. Etelis boweni has a wide Indo-west Pacific distribution that largely overlaps with E. carbunculus, and the two species are often caught on the same fishing line.     

Trypanosoma pifanoi n. sp. from Colombian Bats*

SYNOPSIS. A new large trypanosome was found in the blood of 19 Artibeus lituratus and 2 Phyllostomus hastatus bats. The monomorphic trypanosome resembles Trypanosoma megadermae in some respects, but differs from it in that it is larger and has a short flagellum, both extremities are very tapered, the kinetoplast is very close to a small nucleus and there is a greater distance between the kinetoplast and the posterior extremity of the body. In diphasic blood-agar cultures there is a great variety of odd multiplication forms not described from other trypanosome cultures, but some simulate T. cruzi. This trypanosome is not capable of infecting mice, tissue culture cells, Carollia perspicillata bats, or triatomids, but is able to infect A. lituratus bats. Culture forms of the trypanosome inoculated intra-coelomically are pathogenic for several species of triatomids, and multiply in the hemolymph of Rhodnius prolizus, often producing forms similar to crithidiae of T. rangeli. Culture forms of the trypanosome seem to have common antigens with T. cruzi. This new species is described as Trypanosoma pifanoi.     

Anatrichus bimaculatus sp. n. (Diptera: Chloropidae) and differential characters between A. bimaculatus sp. n. and A. erinaceus

A new species, Anatrichus bimaculatus sp. n. (Diptera: Chloropidae), is described from Zambia. Two African Anatrichus species, A. bimaculatus sp. n. and A. erinaceus, are characterized, and the main differential features are illustrated.     

Sundapolystoma chalconotae n. g., n. sp. (Monogenea: Polystomatidae) from Rana chalconota (Schlegel) of Peninsular Malaysia

Sundapolystoma chalconotae. n. g., n. sp. (Polystomatidae, Polystomatinae) is proposed for a new polystomatid from the urinary bladder of Rana chalconota (Schlegel) in Peninsular Malaysia. This is the first species of polystomatid to be described from the amphibians of Peninsular Malaysia and the second for the Southeast Asian region. This new genus, as exemplified by S. chalconotae, differs from other polystomatids, and in particular Parapolystoma Ozaki, 1935 (P. bulliense (Johnston, 1912) Ozaki, 1935 and P. johnstoni Pichelin, 1995), in having a tubular uterus and a single diffuse testis. P. crooki Vande Vusse, 1976 is similar to S. chalconotae in having a similar type of uterus and testis, and is re-assigned as Sundapolystoma crooki (Vande Vusse, 1976) n. comb. S. chalconotae differs from S. crooki in having anchors with a longer outer root rather than a longer inner root and 7-8 genital spines compared to 9-13 in S. crooki.     

Characterization of a Mouse Gene (Fbxw6) That Encodes a Homologue of Caenorhabditis elegans SEL-10

The SCF complex is a type of ubiquitin ligase that consists of the invariable components SKP1, CUL1, and RBX1 as well as a variable component, known as an F-box protein, that is the main determinant of substrate specificity. The Caenorhabditis elegans F-box- and WD40-repeat-containing protein SEL-10 functionally and physically associates with LIN-12 and SEL-12, orthologues of mammalian Notch and presenilin, respectively. We have now identified a gene (which we call Fbxw6) that encodes a mouse homologue (F-box–WD40 repeat protein 6, or FBW6) of SEL-10 and is expressed mainly in brain, heart, and testis. Co-immunoprecipitation analysis showed that FBW6 interacts with SKP1 and CUL1, indicating that these three proteins form an SCF complex. Comparison of the genomic organization of Fbxw6, which is located on mouse chromosome 3.3E3, with that of mouse Fbxw1, Fbxw2, and Fbxw4 showed only a low level of similarity, indicating that these genes diverged relatively early and thereafter evolved independently.     

Meles iberica n. sp., a new Eurasian badger (Mammalia, Carnivora, Mustelidae) from Fonelas P-1 (Plio-Pleistocene boundary, Guadix Basin, Granada, Spain)

This paper reports a new species of ancient badger – Meles iberica n. sp. – discovered at the Fonelas P-1 Plio-Pleistocene site (Cuenca de Guadix, Granada, Spain). The anatomical features of its fossils, which identify it as a new species of Meles, include: the great robustness and small size of the specimens found, orbits nearly closed by well-developed zygomatic processes of the frontal bone, very small and rounded infraorbital foramens that open above the fourth upper premolar metacone, upper carnassial teeth with a concave linguodistal outline, the reduction of the talon of the first upper molar, a very deep masseteric fossa, whose anterior margin reaches the mesial limit of the second lower molar, an extensive horizontal platform at the base of this fossa, and a very long and narrow angular apophysis. This species is the most ancient of the genus recorded for the Iberian Peninsula.     

Parachordatortilis n. g. (Nematoda: Spirurida: Acuariidae), with a redescription of P.mathevossianae (Petrov & Chertkova, 1950) n. comb., a parasite of Falco tinnunculus L. (Aves: Falconiformes)

Parachordatortilis n. g. is proposed as a monotypic genus for Parachordatortilis mathevossianae (Petrov & Chertkova, 1950) n. comb. (Spirurida, Acuariidae), previously Dispharynx mathevossianae Petrov & Chertkova, 1950. The new genus can be distinguished from all other acuariid genera by having cordons with a sinistral torsion. Parachordatortilis possesses cordons consisting of two rows of delicate cuticular plates delimiting a longitudinal canal. This pattern of cordon structure suggests that Parachordatortilis is closely related to Dispharynx Railliet, Henry & Sisoff, 1912, Synhimantus Railliet, Henry & Sisoff, 1912 and Chordatortilis Machado de Mendon?a & Olivera de Rodrigues, 1985. P. mathevossianae is redescribed on the basis of light and scanning electron microscopical observations of specimens collected from a common kestrel Falco tinnunculus L. in southern Italy.     

A New Heterotrophic Cryptomonad: Hemiarma marina n. g., n. sp.

We report a new heterotrophic cryptomonad Hemiarma marina n. g., n. sp. that was collected from a seaweed sample from the Republic of Palau. In our molecular phylogenetic analyses using the small subunit ribosomal RNA gene, H. marina formed a clade with two marine environmental sequences, and the clade was placed as a sister lineage of the freshwater cryptomonad environmental clade CRY1. Alternatively, in the concatenated large and small subunit ribosomal RNA gene phylogeny, H. marina was placed as a sister lineage of Goniomonas. Light and electron microscopic observations showed that H. marina shares several ultrastructural features with cryptomonads, such as flattened mitochondrial cristae, a periplast cell covering, and ejectisomes that consist of two coiled ribbon structures. On the other hand, H. marina exhibited unique behaviors, such as attaching to substrates with its posterior flagellum and displaying a jumping motion. H. marina also had unique periplast arrangement and flagellar transitional region. On the basis of both molecular and morphological information, we concluded that H. marina should be treated as new genus and species of cryptomonads.     

Brettanomyces abstinens sp.n.

A new yeast is described,Brettanomyces abstinens, isolated from ginger ale in the U.S.A. This species differs from all the presently acceptedBrettanomyces species by not assimilating trehalose.     

Linguaserra spandeli sp. nov. (Echinodermata: Ophiocistioidea) from the Late Permian (Zechstein) of Thuringia, Germany

From the Late Permian Zechstein reefs (Lopingian: Wuchiapingian) of eastern Thuringia, Germany, the new ophiocistioid goniodont Linguaserra spandeli sp. nov., is described, figured, and discussed, within the Linguaserridae Reich and Haude, 2004. The (para)genus Linguaserra is redefined; the stratigraphical and regional distribution as well as the phylogenetic position are briefly discussed. Linguaserra spandeli sp. nov. is the stratigraphically youngest record of this echinoderm group (Echinozoa: Ophiocistioidea) worldwide.     

The erection of Pelecanema n. g. (Nematoda: Spirurida: Acuariidae), with redescriptions of P. sirry (Khalil, 1931) n. comb. and P. pelecani (Johnston & Mawson, 1942) n. comb.

Pelecanema n. g. is erected for P. sirry (Khalil, 1931) n. comb., syn. Synhimantus sirry Khalil, 1931 (type-species) and P. pelecani (Johnston & Mawson, 1942) n. comb., syn. Dispharynx pelecani Johnston & Mawson, 1942. In the structure of its cordons, consisting of two rows of delicate cuticular plates, the new genus is similar to Synhimantus Railliet, Henry & Sisoff, 1912, Dispharynx Railliet, Henry & Sisoff, 1912, Chordatortilis Machado de Mendon?a & Olivera de Rodrigues, 1965 and Parachordatortilis Mutafchiev, Santoro & Georgiev, 2010. Pelecanema sirry, a parasite of Pelecanus onocrotalus L. and P. crispus Bruch (Pelecaniformes, Pelecanidae) in Africa (Egypt and Senegal) and Europe (Ukraine and Bulgaria), is redescribed using light and scanning electron microscopy on the basis of specimens from P. crispus from Bulgaria. Pelecanema pelecani, a parasite of Pelecanus conspicillatus Temminck in Australia, is also redescribed using light microscopy on the basis of specimens from its type-host and type-locality. In contrast to a previous opinion recognising Pelecanema sirry and P. pelecani as synonyms, the two species are considered distinct and P. pelecani is validated.     

Euzetia occultum n. g., n. sp. (Euzetiinae n. subf.), a monocotylid monogenean from the gills of Rhinoptera neglecta (Rhinopteridae) from Moreton Bay,Queensland, Australia

Euzetia occultum n. g., n. sp. (Monogenea: Monocotylidae) is described from the gills of the Australian cownose ray Rhinoptera neglecta Ogilby collected in Moreton Bay, Queensland, Australia. Euzetia has one central and ten peripheral loculi, which is similar to species in Decacotyle Young, 1967. However Euzetia is distinguished from other genera in the family by the presence of an additional loculus on either side of the central loculus. Because Euzetia does not fit into any of the six existing subfamilies in the Monocotylidae Taschenberg, 1879, as currently recognised, we propose the Euzetiinae n. subf. to accommodate the new genus. Euzetia occultum is described and illustrated fully. This is the first published record of a monocotylid from a species of Rhinoptera Cuvier.     

The phylogenetic origin and evolution of acellular bone in teleost fishes: insights into osteocyte function in bone metabolism

Vertebrate bone is composed of three main cell types: osteoblasts, osteoclasts and osteocytes, the latter being by far the most numerous. Osteocytes are thought to play a fundamental role in bone physiology and homeostasis, however they are entirely absent in most extant species of teleosts, a group that comprises the vast majority of bony ‘fishes’, and approximately half of vertebrates. Understanding how this acellular (anosteocytic) bone appeared and was maintained in such an important vertebrate group has important implications for our understanding of the function and evolution of osteocytes. Nevertheless, although it is clear that cellular bone is ancestral for teleosts, it has not been clear in which specific subgroup the osteocytes were lost. This review aims to clarify the phylogenetic distribution of cellular and acellular bone in teleosts, to identify its precise origin, reversals to cellularity, and their implications. We surveyed the bone type for more than 600 fossil and extant ray‐finned fish species and optimised the results on recent large‐scale molecular phylogenetic trees, estimating ancestral states. We find that acellular bone is a probable synapomorphy of Euteleostei, a group uniting approximately two‐thirds of teleost species. We also confirm homoplasy in these traits: acellular bone occurs in some non‐euteleosts (although rarely), and cellular bone was reacquired several times independently within euteleosts, in salmons and relatives, tunas and the opah (Lampris sp.). The occurrence of peculiar ecological (e.g. anadromous migration) and physiological (e.g. red‐muscle endothermy) strategies in these lineages might explain the reacquisition of osteocytes. Our review supports that the main contribution of osteocytes in teleost bone is to mineral homeostasis (via osteocytic osteolysis) and not to strain detection or bone remodelling, helping to clarify their role in bone physiology.     

Two New Diophrys‐Like Genera and Their Type Species,Apodiophrys ovalis n. g., n. sp. and Heterodiophrys zhui n. g., n. sp. (Ciliophora: Euplotida), with Notes on Their Molecular Phylogeny

ABSTRACT. Based on both morphological and molecular information, two new euplotid genera Apodiophrys n. g. and Heterodiophrys n. g. are described in the present paper. Apodiophrys n. g. is defined as sculptured Diophryinae with bipartite adoral zone; frontoventral cirri arranged in Diophrys‐pattern; marginal cirri located in two clearly separated groups. Heterodiophrys n. g. is recognizable by the combination of Diophrys‐like frontoventral cirri and the unique structure of several marginal cirri that are arranged in a long row. The type species for both new genera, Apodiophrys ovalis n. sp. and Heterodiophrys zhui n. sp., collected from southern China sea, are described. The small subunit rRNA (SSU rRNA) gene sequences for both new taxa are determined. Phylogenetic analyses based on these data indicate that Apodiophrys is most closely related to Paradiophrys, which then clusters with Uronychia species. Thus, Apodiophrys–Paradiophrys is separated from other typical Diophrys‐like genera in the SSU rRNA gene trees. The new genus Heterodiophrys is basal to the sister group of Diophrys–Diophryopsis, hence belongs to the “core”Diophrys‐complex.