Soil factors influencing the distribution of macrofungi in oak forests of southern Sweden

The macrofungal flora (species producing fruitbodies) of oak forest in Scania and N.E. Småland, south Sweden, is compared on the basis of soil chemical and stand structural properties and general differences in the deposition of acid and acidifying pollutants between these two regions. Deposition in Scania is, on average, twice as high and the mean base saturation of the oak forest humus only half of that in Småland. Species characteristic of soils with high base saturation/pH values (e.g. Cortinarius nemorensis, Entoloma nidorosum, Camarophyllus spp., Marasmius epiphyllus ) were usually more common in Småland, whereas the opposite was true for most species characteristic of highly acidic soils (e.g. Entoloma cetratum, Lactarius camphoratus, L. theiogalus, Mycena sanguinolenta ). Known changes of soil acidity and base saturation in south Sweden during recent decades and information from this and related studies suggest that the species composition of the macrofungal flora in deciduous forest of south Sweden is gradually changing as a result of changing soil chemistry.     

Post-fire recovery of acorn production by four oak species in southern ridge sandhill association in south-central Florida

We examined post-fire recovery of two components of acorn production (percentage of bearing ramets [stems] and number of acorns per bearing ramet) for four species of oaks in southern ridge sandhill vegetation in south-central peninsular Florida. Annual counts of acorns on two white oaks (Quercus chapmanii and Q. geminata) and two red oaks (Q. laevis and Q. myrtifolia) were conducted annually (except in 1991) on two 2.7-ha grids from 1969 to 1998. A prescribed burn was conducted on one of the grids in May 1993. Newly sprouted ramets of both white oaks produced acorns during the first year following the fire, whereas red oaks required 3 yr (Q. myrtifolia) or 4 yr (Q. laevis) to produce acorns. The difference in the timing of post-fire acorn production between the white and red oak species reflected the difference in the number of years from flower bud initiation to mature acorns in the two groups, with the additional year-long lag in Q. laevis probably attributable to the fact that it is typically a tree rather than a shrub species. The data suggested that percentage of bearing ramets in the smallest size class of the two white oak species was markedly lower in the burned than unburned grid in the first year of post-fire acorn production and higher in the fifth year, but these trends were not evident for the red oaks. Among all four species, differences between mean number of acorns in burned and unburned grids were significant in only two cases (the largest size class of both white oak species in the fifth year). There was no evidence of recruitment from acorns on the burned grid, possibly due to the rapid redevelopment of the shrub layer because of low mortality of the extensive clonal root systems. Rapid post-fire recovery of acorn production in xeric fire-prone habitats is presumably the result of selection to increase the probability of recovery and persistence following sufficiently intense fires that result in high oak mortality. The timing and magnitude of post-fire acorn production in sandhill and other xeric Florida associations has a potential impact on a wide variety of insects, birds, and mammals that feed on acorns, as well as on the species with which they interact.     

Association of ectomycorrhizal mats with Pacific yew and other understory trees in coniferous forests

This study was designed to determine whether ectomycorrhizal mats (ECM) are more likely to be present in soils at the base of common understory trees than in soils distant from trees and to determine whether occurrence of ECM is related to tree size. Three understory trees were studied: Pacific yew (Taxus brevifolia Nutt.), western hemlock (Tsuga heterophylla (Raf.)Sarg), and vine maple (Acer circinatum Pursh). The 12 sites studied represent a range of climatic conditions and management histories. More than 2,900 plots were surveyed over 18 months. The incidence of ECM was higher at the base of all three species than in control plots. Incidence of mats was also positively correlated with tree size. Saplings consistently had a lower incidence of ECM than did larger trees.Paper 3028 of the Forest Research Laboratory, Oregon State University, Corvallis     

A glimpse at future forests: predicting the effects of <Emphasis Type="Italic">Phytophthora ramorum</Emphasis> on oak forests of southern Appalachia

The highly pathogenic Phytophthora ramorum, causal organism of sudden oak death (SOD), is established in forests of the Pacific Northwest (USA) and is threatening invasion of other regions. Given the breadth of its host range, with dozens of asymptomatic ornamental hosts and with oaks, Quercus spp., in the red oak (Erythrobalanus) subgenus particularly susceptible, we investigated the consequences of its invasion and establishment in oak-dominated deciduous forests of the eastern USA. We evaluated the nature and extent of pathogen invasion using vegetation assessments coupled with growth simulations. The woody plant community was assessed in three strata (upper, mid- and lower) and was used to characterize forest composition and structure. Using the Forest Vegetation Simulator (FVS), we then projected woody vegetation growth 50 years into the future with and without the effects of SOD. In forest simulations lacking pathogen invasion, little change in composition or structure is forecasted. Both red oaks and white oaks (subgenus Leucobalanus) increase slightly but significantly over the length of the simulation. In contrast, in SOD-affected forests our projections predict a significant loss of red oaks within 10 years of pathogen invasion. Basal area of white oaks and non-oaks is expected to increase more so in the absence of red oaks. The loss of red oaks to pathogen infection will result in greater increases in red maple, Acer rubrum, and yellow poplar, Liriodendron tulipifera, than in forests free of SOD. Loss of red oak represents a significant loss of hard mast, with potentially devastating consequences for wildlife. Red oak loss will also affect decomposition rates, nutrient cycling, forest structure, and timber values, with consequences for forest health and sustainability.     

Coping with invasive alien species: the Argentine ant and the insectivorous bird assemblage of Mediterranean oak forests

Cork oak forests invaded by the Argentine ant Linepithema humile have a lower abundance and biomass of arthropod prey for birds than uninvaded forests. We studied whether the biomass of breeding insectivorous birds was also lower in invaded areas. We explored this and other possible effects of the ant invasion on the bird community by censusing birds in transects located in four invaded and four uninvaded forest sites in Catalonia (NE Spain) for 3 years. Redundancy analysis showed only slight differences in the community composition between forests. Two insectivorous species, Luscinia megarhynchos and Fringilla coelebs, tended to be less abundant in invaded areas although two others, Phylloscopus bonelli and Sylvia melanocephala, showed the opposite trend. Overall, the differences in prey biomass between invaded and uninvaded areas did not entail a biomass shift in the guild of insectivorous birds, regardless of whether they were shrub or canopy foragers. The main role of the habitat structure in determining bird densities and food resources being non-limiting in the studied forests are two possible non-exclusive explanations for this inconsistency. At today’s levels, the Argentine ant invasion does not appear to have greatly determined the insectivorous bird assemblage of the forests evaluated.     

Merged trees in second-growth, fire-origin forests in Patagonia, Chile: positive spatial association patterns and their ecological implications

?Premise of the Study: Negative density-dependent processes have been thought to be the primary cause of shifting spatial patterns of tree populations through time. The existence of adult tree clusters might challenge this classical prediction. Here, we document the prevalence of merged stems (clustering of mature trees leading to stem fusion) in second-growth forests of Nothofagus pumilio and hypothesize that it is nonrandom but predictable in space. ?Methods: We stem-mapped nine sites in second-growth edge and interior forests of fire origin and in mature forests of N. pumilio (>3500 trees) in central Patagonia, Chile. The spatial structure of stand-level and individual-level features was estimated with spatial analyses (pair-correlation function and nearest-neighbor distances). ?Key Results: Multistemmed trees were merged clusters of separate individuals. Merged trees were predominantly found at the edge of the second-growth forests. We found strong clustering (≤5 m) at forest edge sites and none at interior sites. Nearest-neighbor distance distributions were unimodal for unmerged trees and monotonically decreasing for merged trees; interstem distances were much smaller at the edge sites than at the interior sites. ?Conclusions: The occurrence of merged trees at the forest edge, and the resulting high spatial aggregation of stems, is consistent with the hypothesis that establishment was probably aggregated. The spatial pattern found at the forest edge changes the standard spatial pattern sequence through time in temperate forests, altering traditional forest-stand-dynamics models.     

Discordance of species trees with their most likely gene trees: the case of five taxa

Under a coalescent model for within-species evolution, gene trees may differ from species trees to such an extent that the gene tree topology most likely to evolve along the branches of a species tree can disagree with the species tree topology. Gene tree topologies that are more likely to be produced than the topology that matches that of the species tree are termed anomalous, and the region of branch-length space that gives rise to anomalous gene trees (AGTs) is the anomaly zone. We examine the occurrence of anomalous gene trees for the case of five taxa, the smallest number of taxa for which every species tree topology has a nonempty anomaly zone. Considering all sets of branch lengths that give rise to anomalous gene trees, the largest value possible for the smallest branch length in the species tree is greater in the five-taxon case (0.1934 coalescent time units) than in the previously studied case of four taxa (0.1568). The five-taxon case demonstrates the existence of three phenomena that do not occur in the four-taxon case. First, anomalous gene trees can have the same unlabeled topology as the species tree. Second, the anomaly zone does not necessarily enclose a ball centered at the origin in branch-length space, in which all branches are short. Third, as a branch length increases, it is possible for the number of AGTs to increase rather than decrease or remain constant. These results, which help to describe how the properties of anomalous gene trees increase in complexity as the number of taxa increases, will be useful in formulating strategies for evading the problem of anomalous gene trees during species tree inference from multilocus data.     

The association of Prototheca spp. with slime flux in Ulmus amencana and other trees

All known species of Prototheca and one new species were isolated from slime flux of woody stems. Fortyfive trees (11 species) harbored Prototheca spp. Monthly quantitative studies of slime flux from 10 trees of Ulmus amencana revealed that 6 harbored a new species, P. ulmea, often in large numbers (1×10⁵ colony forming units ml^–1 slime flux). In total, P. ulmea was isolated from 17 elms and one oak from three states in the U.S.A. In spite of this extensive association, no causal relationship has been established. Prototheca ulmea is a small, oval, capsulated species similar to P. stagnora, but differentiated by its morphology and inability to use fructose and galactose. Utilization of other carbohydrates is restricted and its only known habitat is slime flux.     

Occurrence of Pythium and Phytopythium species isolated from citrus trees infected with gummosis disease in tunisia

A survey was conducted, during 2012/2013, to identify the causal agents of citrus gummosis in Tunisia. The obtained isolates were identified by molecular and pathological criteria. Three species of Pythium (P. aphanidermatum, P. ultimum and P. dissotocum) and two species of Phytopythium (P. vexans and P. mercuriale) were recovered. Pathogenic tests, using twigs inoculation method for five citrus varieties under laboratory conditions, showed necrotic lesions similar to those observed in natural infected citrus trees by gummosis. In greenhouse experiments, the pathogenicity of the species to citrus was demonstrated by soil and trunk inoculations. Results showed necrotic lesions in the trunk of the variety “Clementine”. P. ultimum is the most virulent, while P. mercuriale was the least virulent in trunk inoculation. Symptom of necrotic roots has been also observed. This is the first report of Pythium and Phytopythium species within the citrus area in Tunisia.     

Patterns of intra- and interspecific association in leaf-mining insects on three oak host species

Abstract. 1. We determined mortality and distributional patterns of leaf miners on three oak host species (Quercus falcata, Q.nigra and Q.hemisphaerica) in northern Florida, U.S.A.
2. Patterns of intra- and interspecific occurrence within leaves, and mortality of five most abundant leaf miner species were analysed as a test of competition.
3. Miners co-occurred on leaves more often that expected by chance (P<0.05) in six of ten possible species combinations and log-linear model analysis showed no negative higher-order interactions.
4. All five miner species had highly clumped distributions between leaves (P<0.01).
5. Leaf miner survival was less than expected for four of five species when co-occurring on leaves with conspecifics than when mining with heterospecifics or alone (P<0.05).
6. We conclude that interspecific competition is unapparent within this leaf miner guild and that intraspecific competition occurs in four of the five major leaf miner species. We discuss leaf miner selection of common leaves, perhaps based on chemical/physical leaf characters, as a cause of intra- and interspecific aggregation.     

热带森林的低密度种及其形成及维持机制

低密度种指在热带森林中存在的成年个体密度很低的物种 ,是热带森林中树种的主要存在形式。对低密度种的认识和保护是热带森林生物多样性保育的关键之一。与稀有种相比 ,低密度种的含义更为广阔 ,它还包括那些密度低、分布范围广和绝对个体数量大的物种。低密度种形成的主要原因是母树附近的幼苗和种子的存活率较低 ,密度制约和有限更新也是低密度种形成的重要原因。维持低密度种最重要的外部原因是昆虫较强的飞行能力和传粉能力 ,而其最重要的内部原因是低密度种的生殖特性。     

The effect of silver and other metal ions on the in vitro growth of root-rotting Phytophthora and other fungal species

A range of metal ions and the oxoanion WO₄^2-were toxic to zoospores of Phytophthora nicotianae parasitica in the order: Ag⁺ > Cu⁺⁺ > WO₄^2-> Ni⁺ > Co⁺⁺ > Zn⁺. The LD₅₀ for Ag⁺, 0.11 μM (11.4 ppb), compared with 1.84 μm (117 ppb) for Cu⁺⁺. Silver was similarly toxic to a range of pathogens including Pythium aphanidermatum, Thielaviopsis basicola and Fusarium oxy-sporum f.spp. Most zoospores of Phytophthora spp. were killed by Ag⁺ in the range 46–460 nM (5–50 ppb), bursting at the higher concentrations. A small sub-population of most propagules exhibited greater tolerance to silver than the whole. In 0.93 μM (100 ppb) Ag⁺ 1.4% of P. nicotianae parasitica zoospores survived but were all killed at 500 ppb. A population of P. cryptogea (1.9%) surviving 0.47 μm (50 ppb) were killed at 0.93 μM (100 ppb). Zoospore cysts and germlings showed the same sensitivity to silver. Oospores were mostly killed over the range 0.23–0.93 μm (25–100 ppb) Ag⁺, some surviving up to the lethal concentration of 9.26 μM (1000 ppb). Mycelium of P. cryptogea was generally less sensitive, with some growth occurring at 9.26 μm (100 ppb). Zoosporangiogenesis was unaffected over the range 0.47–4.65 μm (50–500 ppb). Toxicity increased with increased pH over the range 5.0–6.5. Ionic silver was lost from solution during a microscope slide bioassay by binding to the glass surface. In the presence of chloride ions, colloidal AgCl formed which was equally toxic to P. cryptogea. Silver and AgCl were further lost from solution by colloidal agglomeration - Ostwald ripening - and by AgCl adsorption to glass. Silver, < 90 nM (10 ppb) Ag⁺ as AgNO₃ and particles of silver chloride were both strongly attractive to zoospores of P. cryptogea. Spores burst or failed to germinate on entering lethal concentrations. The results are discussed in the context of the use of silver salts to control Phytophthora root-rot pathogens and the importance of ion availability in in vitro toxicity assays.     

Variation in species richness and species pool size across a pH gradient in forests of the southern Blue Ridge Mountains

Pärtel (Ecology 83: 2361–2366, 2002) andEwald (Folia Geobot. 38: 357–366, 2003) suggest that the relationship between local species density and soil pH is determined by regional species pool size, which in turn reflects the relative abundance of soil types during the evolutionary history of the flora. Ewald observed that calcareous sites in Central Europe have higher species density and larger species pools than acidic sites, and argues that this is the consequence of a Pleistocene bottleneck for acidophiles.The flora of the southern Blue Ridge Mountains USA has always been associated with primarily acidic soils. We used vegetation and soil data from 3328 100 m² southern Blue Ridge forest plots to examine the generality of the Pärtel-Ewald hypothesis. The Blue Ridge flora with less than 20% of species confined to sites above pH 4.7 contrasts dramatically with that of Europe. However, regional species pool size increases with pH. Genus- and family-level pools increase with pH, suggesting an ancient origin for this pattern. Mean species density is also strongly positively correlated with soil pH. Thus, both regional species pool size and plot species density of southern Blue Ridge forests fail to conform to predictions derived from the work of Pärtel and Ewald.The increase in species pool with increase in pH exhibited by southern Blue Ridge forests appears to reflect broad species distributions and tolerance for high pH conditions among species that grow predominantly under acid conditions. We conclude that richness on higher pH sites is a consequence of generally more favorable conditions for plant growth and/or establishment. Ewald may be correct in asserting that the abundance of high pH specialists in Central Europe is an historical artifact, but our data contradict the assertion of Pärtel and Ewald that evolution of a flora in a primarily low pH environment will necessarily translate into a negative correlation between pH and species density in local vegetation.     

Identity and genetic structure of the photobiont of the epiphytic lichen Ramalina menziesii on three oak species in southern California

Lichens, a classic example of an obligate symbiosis between fungi and photobionts (which could be algae or cyanobacteria), are abundant in many terrestrial ecosystems. The genetic structure of the photobiont population found in association with a lichen-forming fungal species could be affected by fungal reproductive mode and by the spatial extent of gene flow in the photobiont. Using DNA sequences from one nuclear ribosomal and two chloroplast loci, we analyzed the genetic structure of the photobiont associated with the fungus Ramalina menziesii at an oak woodland study site in southern California. We had previously shown that the fungus exhibited no genetic structure among four local sites or three phorophyte species. Our goals were to identify the photobiont species and assess its genetic structure. We found that R. menziesii was highly specific in its photobiont choice and associated with one alga, Trebouxia decolorans. In contrast to the fungal population, we found significant differentiation among the algae sampled on three oak species and little genetic structure among the sites for two of the three algal loci. We hypothesize that R. menziesii is locally adapted to the phorophyte species through habitat specialization in the algal partner of the symbiosis.     

Ecological and site historical aspects of N dynamics and current N status in temperate forests

Ecological developments during Holocene age and high atmospheric depositions since industrialization have changed the N dynamics of temperate forest ecosystems. A number of different parameters are used to indicate whether the forests are N‐saturated or not, most common among them is the occurrence of nitrates in the seepage water below the rooting zone. The use of different definitions to describe N saturation implies that the N status of ecosystems is not always appropriately assessed. Data on N dynamics from 53 different German forests were used to classify various development states of forest ecosystems according to the forest ecosystem theory proposed by Ulrich for which N balances of input – (output plus plant N increment) were used. Those systems where N output equals N input minus plant N increment are described as (quasi‐) Steady State Type. Those forests where N output does not equal N input minus plant N increment as in a ‘transient state.’ Forests of the transient state may lose nitrogen from the soil (Degradation Type) or gain nitrogen [e.g., from atmospheric depositions (Accumulation Type)]. Forest ecosystems may occur in four different N states: (a) (quasi‐) Steady State Type with mull type humus, (b) Degradation Type with mull type humus, (c) Accumulation Type with moder type humus, and (d) (quasi‐) Steady State Type with moder type humus. Forests with the (quasi‐) steady state with mull type humus in the forest floor (n= 8) have high‐soil pH values, high N retention by plant increment, high N contents in the mineral soils, and have not undergone large changes in the N status. Forests of the Degradation Type lose nitrogen from the mineral soil (currently degradation is occurring on one site). Most forests that have moder or mor type humus and low‐soil pH values, and low N contents in the mineral soil have gone through the transient state of organic matter loss in the mineral soils. They accumulate organic matter in the forest floor (accumulation phase, currently 21 sites are accumulating 6–21 kg N ha^?1 yr^?1) or have reached a new (quasi‐) steady state with moder/mor type humus (n= 15). N retention in the accumulation phase has significantly increased in soil with N deposition (r²= 0.38), soil acidity (considering thickness of the forest floor as indices of soil acidity, r²= 0.43) and acid deposition (sulfate deposition, r²= 0.39). Retention of N (4–20 kg N ha^?1 yr^?1) by trees decreased and of soils increased with a decrease in the availability of base cations indicating the important role of trees for N retention in less acid soils and those of soils in more acid soils. Ecosystem theory could be successfully applied on the current data to understand the dynamics of N in temperate forest ecosystems.     

Pollination and breeding systems of woody plant species in tropical dry evergreen forests,southern India

Tropical dry evergreen forests (TDEF) are a unique forest type found along the east coast of India. They mostly occur as small, isolated fragments of varying sizes (0.5 to ≈10 ha) and are considered as endangered forests types in peninsular India. Although plant diversity is well documented in these forests, there is a paucity of ecological studies vital for conservation and for planning restoration activities. We studied reproductive biology of 13 woody species: four trees, six shrubs, and three lianas in fragments of TDEF in southern India. The phenology of reproduction, floral biology, anthesis and sexual system of each species were recorded. The pollination mode was assessed through observations of the visitation frequency of pollinators and from the floral characters. The breeding system was determined by hand-augmented self- and cross-pollination experiments. The plants flowered during the dry season from January to July. Plants of nine species had both flowers and fruits at the same time. Twelve species were hermaphrodites and one was polygamo-dioecious. Flowers of 11 species opened at dawn and two at dusk. Four species were self-incompatible and six were self-compatible. Natural fruit set ranged from 10% to 56%, self-incompatible species having low fruit set. Cross-pollen augmentation increased fruit set, suggesting presence of outcrossing in all species. The majority of plants species (85%) had a generalized pollination system, receiving visits from diverse insects, such as social bees, solitary bees, wasps, moths and flies. However, only few of them were functionally important for the species. Two species namely: Capparis brevispina and C. zeylanica had butterflies and birds, respectively, as their main pollinators. Our data reveal that there is a predominance of outcrossing in plant species and a generalized pollination system in these forests. We suggest that restoration of TDEFs is crucial as habitats, not only for wild plants but also for pollinating insects.     

Occurrence of species from Acinetobacter genus in clinical material and other sources]

The analysis regarded 304 strains of Acinetobacter genus isolated from various diagnostic materials, objects from hospital environment and from non-hospital sources (soil, water, various animals). Applying API ZONE system, five species were isolated: Acinetobacter juni, (18.42%), Acinetobacter baumanii (70.39%), Acinetobacter haemolyticus (5.59%), Acinetobacter lwoffii (4.6%) and Acinetobacter johnsonii (0.99%). Most frequently isolated species were present in purulent materials and in samples from respiratory tract infections and urinary tract infections. Over 47% Acinetobacter species strains were present in clinical material as single aerobic bacteria.