In urban South Africa, 16 year old adolescents experience greater health equality than children

Despite the strongly established link between socio-economic status (SES) and health across most stages of the life-course, the evidence for a socio-economic gradient in adolescent health outcomes is less consistent. This paper examines associations between household, school, and neighbourhood SES measures with body composition outcomes in 16 year old South African Black urban adolescents from the 1990 born Birth to Twenty (Bt20) cohort. Multivariable regression analyses were applied to data from a sub-sample of the Bt20 cohort (n = 346, 53% male) with measures taken at birth and 16 years of age to establish socio-economic, biological, and demographic predictors of fat mass, lean mass, and body mass index (BMI). Results were compared with earlier published evidence of health inequality at ages 9–10 years in Bt20. Consistent predictors of higher fat mass and BMI in fully adjusted models were being female, born post term, having a mother with post secondary school education, and having an obese mother. Most measures of SES were only weakly associated with body composition, with an inconsistent direction of association. This is in contrast to earlier findings with Bt20 9–10 year olds where SES inequalities in body composition were observed. Findings suggest targeting obesity interventions at females in households where a mother has a high BMI.     

Relatedness with different interaction configurations

In an inclusive fitness model of social behaviour, a key concept is that of the relatedness between two interactants. This is typically calculated with reference to a “focal” actor taken to be representative of all actors, but when there are different interaction configurations, relatedness must be constructed as an average over all such configurations. We provide an example of such a calculation in an island model with local reproduction but global mortality, leading to variable island size and hence variable numbers of individual interactions. We find that the analysis of this example significantly sharpens our understanding of relatedness. As an application, we obtain a version of Hamilton's rule for a tag-based model of altruism in a randomly mixed population. For large populations, the selective advantage of altruism is enhanced by low (but not too low) tag mutation rates and large numbers of tags. For moderate population sizes and moderate numbers of tags, we find a window of tag mutation rates with critical benefit/cost ratios of between 1 and 3.     

Adolescent Social Attitudes in South Africa and Swaziland

A content analysis was undertaken of stories written by adolescents in urban townships in South Africa and in an urban setting in Swaziland. The findings concerning the nature of the actors and the relationships between actors in the stories suggest that though South Africans in their early years encounter more elements of modernity than do the Swazis, in their present situation they view the world as having less rational elements, fewer psychological satisfactions, and more threats to their physical welfare than do the Swazis.     

Decomposing race and gender differences in underweight and obesity in South Africa

Using data from the National Income Dynamics Study, we document differentials in both underweight and obesity across race and gender in post-Apartheid South Africa. Using a nonlinear decomposition method, we decompose these differences across gender within race and then across race within gender. Less than one third of the differences in obesity and underweight across gender are explained by differences in covariates. In contrast, at least 70% of the obesity differences across race are explained by differences in covariates. Behavioral variables such as smoking and exercise explain the largest part of the bodyweight differentials across gender. For bodyweight differentials across race within gender, however, socioeconomic status and background variables have the largest explanatory power for obesity differentials, while background variables play the key role in explaining the underweight differentials. These results indicate that eradicating obesity and underweight differentials will require targeting policies to specific groups.     

Orphanhood and fertility in young adults: Evidence from South Africa

I study the relation between orphanhood and fertility patterns in young adults using a longitudinal survey from the city of Cape Town, South Africa. The data set combines two survey waves with a year-by-year life history calendar that records key outcomes (e.g., schooling, work, fertility). It also provides information on so-called ‘parental investments’ (time and material support), family background, and literacy and numeracy test scores. I find that orphans exhibit significantly higher rates of teenage pregnancy. In particular, teenage motherhood is 19% points more likely among (female) orphans. These results suggest that orphanhood may leave a long-lasting ‘imprint’ in terms of premature fertility, especially in teenage females.     

Distribution of cancer mortality rates by province in South Africa

IntroductionCancer mortality rates are expected to increase in developing countries. Cancer mortality rates by province remain largely unreported in South Africa. This study described the 2014 age standardised cancer mortality rates by province in South Africa, to provide insight for strategic interventions and advocacy.Methods2014 deaths data were retrieved from Statistics South Africa. Deaths from cancer were extracted using 10th International Classification of Diseases (ICD) codes for cancer (C00-C97). Adjusted 2013 mid-year population estimates were used as a standard population. All rates were calculated per 100 000 individuals.ResultsNearly 38 000 (8%) of the total deaths in South Africa in 2014 were attributed to cancer. Western Cape Province had the highest age standardised cancer mortality rate in South Africa (118, 95% CI: 115–121 deaths per 100 000 individuals), followed by the Northern Cape (113, 95% CI: 107–119 per 100 000 individuals), with the lowest rate in Limpopo Province (47, 95% CI: 45–49 per 100 000). The age standardised cancer mortality rate for men (71, 95% CI: 70–72 per 100 000 individuals) was similar to women (69, 95% CI: 68–70 per 100 000). Lung cancer was a major driver of cancer death in men (13, 95% CI: 12.6–13.4 per 100 000). In women, cervical cancer was the leading cause of cancer death (13, 95% CI: 12.6–13.4 per 100 000 individuals).ConclusionThere is a need to further investigate the factors related to the differences in cancer mortality by province in South Africa. Raising awareness of risk factors and screening for cancer in the population along with improved access and quality of health care are also important.     

Tissue banking in South Africa: a 19-year history

The establishment of a Tissue Bank and the science of Tissue Banking in South Africa started in the 1960s and is still developing. This article describes the development and growth of Tissue Banking in South Africa. The current emphasis is to supply viable bone products that have been produced under the best possible quality controlled circumstances; with the collaboration between different Organ Donation Organisations. Through collaboration, a dramatic increase in the number of donors was noted over the years. Concurrently, there was a dramatic increase in the usage of different allograft products and now necessitates the development of new graft materials for expanding patient options. As an ongoing concern, the Tissue Bank in South Africa experienced an ever increase in costs to enhance quality/safety controls: increase in historical patient information, documentation and serological testing in a population struggling to control HIV. To date, the South African Tissue Bank has not experienced any untoward patient incidence since the 1960s and currently is getting over 500 donors per year.     

Last Interglacial Hominid and Associated Vertebrate Fossil Trackways in Coastal Eolianites,South Africa

Two Late Pleistocene hominid footprint sites are known in South Africa, one on the west coast (Langebaan) and the other on the southeast coast (Nahoon). Both trackways occur in calcareous eolianites and are dated to the Last Interglacial (～120 ka). The chief objective is to infer anatomical features of these early anatomically modern hominid footprint makers, about which little is known. At Nahoon, trackways of at least five species of vertebrates, including three hominid footprints, are preserved as casts. One footprint preserves excellent detail, appearing in all respects to be modern, but possibly with a deformity of the small toe. The impressions are shallow and suggest slight build. The stature of the footprint maker, as estimated from foot length (19.2 cm), is ～127 cm, considerably less than modern adult Khoi-San and was probably made by a juvenile. The step length is short relative to foot length, a consequence of walking uphill on a yielding substrate. The Langebaan trackway (preserved as natural impressions) comprises two intact prints and remnants of a third. Pronounced push up mounds flank the prints and preservation of toe impressions is poor. The foot length is 22.8 cm, indicating a stature of ～1.57 m. This falls within the range of modern adult Khoi-San, lending some support to the notion that Middle Stone Age people were of small stature. The depth of the prints and clumsy progression are suggestive of heavy build.     

Environmental History and the Desertification of the Karoo,South Africa

Abstract

This paper reviews the desertification debate in South Africa and emphasizes the methods that have been used to understand the environmental history of the semi–arid rangelands in the eastern Karoo during the last 500 years. These mixed grass/dwarf shrub rangelands, with mean annual rainfall totals typically between 300–400 mm, are described and the main driving variables discussed. A brief historical account of the European settlement of the region is also presented. The desertification debate has focussed on three main issues. Firstly, because arid and semi–arid lands appear to be heavily influenced by climate, the changing climatic regime during the Holocene and particularly during the last two hundred years has been the subject of intensive investigation. While all studies conclude that there is no evidence in the historical record to support the popular perception that rainfall totals have decreased this century, the question of changing rainfall seasonality has not been adequately explored. Although mean annual temperatures over the last 50 years have not changed there have been significant increases in mean monthly maximum temperatures and significant decreases in mean monthly minimum temperatures for some of the stations investigated. The second issue of great interest in the South African desertification literature is that of the nature of pre–colonial environments. A wide variety of archaeological, historical and ecological techniques have been used, including analyses of fossil mammal bones in owl pellets, fossil pollen in hyrax middens, notes from traveller's accounts of the region and stable carbon isotopes in soil as well as fossil mammal bones. While all authors agree that the eastern Karoo was more grassy at some stage in the past there is disagreement as to both the timing and cause of the changes to a more shrubby vegetation. The final issue of great concern to the desertification debate in South Africa concerns the rate of change during the last 100 years. Satellite imagery, matched ground and aerial photography, survey data and an analysis of historical stock records cannot agree as to whether the Karoo is degrading or not. Certainly, the classic view of an annually expanding desert margin has been replaced in recent years by a more realistic understanding of the seasonal dynamics of the vegetation. The recent trend to detailed modelling of the demographic process in key species holds much promise for our understanding of the degradation process. The vibrant community of researchers, employing a range of archaeological, historical and ecological techniques, will make important contributions to South Africa's National Action Plan to Combat Desertification.     

Founder populations and the current status of exotic parrots in South Africa

Parrots (families Psittacidae and Cacatuidae) are one of the most threatened taxa of birds, with a combination of threats to wild populations, including capture for the cage bird market, habitat modification and destruction, persecution, disease, and threats from introduced species. As a result of the group's popularity as a cage bird, and the transport of vast numbers of individuals across the globe (both legally and illegally), the establishment of populations beyond their natural ranges has likely been enhanced. This review reports on c. 30 parrot species that have been observed outside of their natural ranges in South Africa, most likely derived, and supplemented, from both intentional and unintentional releases. Of these, the Rose-ringed Parakeet Psittacula krameri and at least one Agapornis species have become established as breeding wild populations. Like other invasive species they may pose threats to local biodiversity; however, all are strongly associated with major urban centres where significant changes to natural biota have already occurred.     

Environmental exposure to uranium in a population living in close proximity to gold mine tailings in South Africa

BackgroundGold mining activities in South Africa resulted in contamination of residential environment with uranium-rich wastes from mine tailings. Health of the people living around the mine tailings could be affected by uranium exposure due to its hazardous chemotoxic and radiological properties.MethodsWe conducted a cross-sectional study to assess i) uranium (U) concentrations in individual hair samples of children and adults living in close proximity to mine tailings in Northeast- Soweto in Johannesburg, South Africa, and ii) the association between U concentrations in hair and various factors, including zone of residence, socio-demographic and housing characteristics. Sampling sites were divided into three zones based on the distance between a dwelling and a cluster of mine tailings (zone 1: <= 500 m, zone 2: 2–3 km away, zone 3: 4–5 km away). U concentrations in hair samples were measured using inductively coupled plasma mass spectrometry. To test the association between U concentrations and selected factors we used robust regression models with log-transformed U concentrations.ResultsAmong 128 subjects with available U measurements, 63 (49%) were children (ages 7–15 years) of which 38 were girls, the remaining 65 (51%) were adult females. Mean (median) U concentration in hair samples was 143 (92) µg/kg. In the mutually adjusted analyses, only an inverse association between age and U concentration in hair remained statistically significant, with geometric mean in children being 2.1 times higher compared to adults (P < 0.001). There was no evidence of an association between zones and U concentration (P = 0.42).ConclusionsThere was little evidence of association between U concentration in hair and distance from the mine tailings within the 5 km range, but overall concentrations were elevated compared to general population samples in other parts of the world. Children had statistically significantly higher geometric mean of uranium concentration in hair compared to adults. The results are important for improvement of mining waste policies and implementation of health monitoring and protective measures in populations at risk.Article categoryResearch Article     

Local responses to conservation in the Richtersveld National Park, South Africa

Local notions of conservation deserve closer scrutiny. We cannot assume that they naturally coincide with those of the tourist core; nor that they are automatically given higher priority when local populations are induced to participate in practices which conserve flora and fauna. A case study of the establishment of the Richtersveld National Park in Namaqualand, a remote arid region of South Africa, is used to argue that local attitudes to conservation and development (associated with tourism) can become increasingly cynical and ambivalent in the context of ecotourism. Furthermore, such attitudes are shaped less by economic inducements than by the often contradictory messages about conservation that are being communicated daily.     

A new basal dicynodont from the Upper Permian of South Africa

The skull of a small anomodont therapsid, from the Tapinocephalus Assemblage Zone (Abrahamskraal Formation, Beaufort Group, Upper Permian) in Northern Cape Province, South Africa, represents a new basal dicynodont and is described in detail. Colobodectes cluveri gen. et sp. nov. is distinguished from other dicynodonts by an anteroposteriorly extensive caniniform process, parietals that were broadly overlapped posterolaterally by posterodorsal processes of the postorbitals, diverging anterior palatal ridges, and a dorsoventrally low foramen magnum. A phylogenetic analysis indicates that Colobodectes is the basalmost member of a dicynodont clade that excludes Eodicynodon . This position is not particularly strong, as two additional steps are needed to make Colobodectes and Eodicynodon oosthuizeni exchange places on the most parsimonious tree. Another discovery of the phylogenetic analysis is that there is little basis for recognizing Eodicynodon oelofseni as the closest relative of E. oosthuizeni . The former species is identified as the sister taxon of a clade that includes the latter and all other dicynodonts.     

Coral recruitment patterns at Sodwana Bay, South Africa

Recruitment is widely acknowledged as one of the most important processes in the maintenance of coral reef systems, particularly in their recovery and replenishment following disturbances. In this study variation in coral recruitment was monitored for 3 years at Sodwana Bay, South Africa, located in the Greater St Lucia Wetland Park (GSLWP), a world heritage site. Due to the latitude (27–28°S) and physical conditions, this area is considered marginal for coral reef growth. Recruitment of corals to ceramic tiles peaked between March and May each year, with broadcast spawners dominating plates in March and brooders more abundant in May. Pocilloporid corals were the most abundant during all periods except March 2001, when acroporids comprised 72% of the total number of spat. Total recruitment was the highest during this period, with a mean of 13.2 ± 15.73 (mean ± SD) corals tile⁻¹. Recruitment rates varied widely between and within different reefs monitored. Patterns of variation were inconsistent between seasons, but some reefs had persistently low rates of settlement.     

Gelidium pristoides in South Africa

Gelidium pristoides has been harvested commercially from the eastern Cape, South Africa, since 1951, with 40–80 t y^–1 (dry wt) collected in recent years. This species has been intensively studied since 1983, and we briefly review knowledge of its biology in relation to harvesting. We describe a new study of intertidal epiphytic animals, showing that none is specific to G. pristoides, and that only 2.8% of these animals (numbers) inhabit this agarophyte, while the rest are found in other intertidal algal communities: harvesting is considered to have negligible effects on epifauna. Over the past 3 y, we have monitored, at two sites, the effects of the harvesting of G. pristoides on other benthic algae and animals. In only two of the seven main components analysed, did we find any difference between harvested and control plots. At one site only, the number of limpets and percentage cover of Gelidium was higher in harvested plots. These results show that harvesting has no significant biological effect. Regulations governing seaweed exploitation in South Africa were amended in 1988, to encourage local processing of products, and these changes are discussed in relation to the local Gelidium industry. Despite experimental results predicting a higher yield per unit effort if harvesting is limited to summer, harvesting continues throughout the year for practical reasons.     

Mokola virus involved in a human contact (South Africa)

Isolations of Mokola virus (MOKV) are rare, but in South Africa and Zimbabwe this genotype 3 lyssavirus variant has been occasionally found in domestic mammals (cats and a dog) with a total of 17 virus isolates (South Africa 10, Zimbabwe 7) having been recovered during the past 30 years. We report the identification of a MOKV isolate involved in a human contact in Grahamstown (Eastern Cape, South Africa) and a genetic comparison with previously characterized isolates. This reported MOKV case was in a previously immunized cat. While the continual recovery of MOKV isolates in domestic cats is speculative of the existence of a reservoir host species among bats or rodents, the lack of protection with currently used vaccines is discussed and the need for biologicals with a wider spectrum of protection against this lyssavirus variant is highlighted.     

Bradyrhizobium xenonodulans sp. nov. isolated from nodules of Australian Acacia species invasive to South Africa

A genealogical concordance approach was used to delineate strains isolated from Acacia dealbata and Acacia mearnsii root nodules in South Africa. These isolates form part of Bradyrhizobium based on 16S rRNA sequence similarity. Phylogenetic analysis of six housekeeping genes (atpD, dnaK, glnII, gyrB, recA and rpoB) confirmed that these isolates represent a novel species, while pairwise average nucleotide identity (ANIb) calculations with the closest type strains (B. cosmicum 58S1^T, B. betae PL7HG1^T, B. ganzhouense CCBAU 51670 ^T, B. cytisi CTAW11^T and B. rifense CTAW71^T) resulted in values well below 95–96%. We further performed phenotypic tests which revealed that there are high levels of intraspecies variation, while an additional analysis of the nodA and nifD loci indicated that the symbiotic loci of the strains are closely related to those of Bradyrhizobium isolates with an Australian origin. Strain 14AB^T (=LMG 31415 ^T = SARCC-753 ^T) is designated as the type strain of the novel species for which we propose the name Bradyrhizobium xenonodulans sp. nov.     

Daylight occurrence of humpback dolphins Sousa chinensis in Algoa Bay, South Africa

This paper describes the pattern of daylight occurrence of humpback dolphins Sousa chinensis in Algoa Bay, the Eastern Cape, South Africa, between May 1991 and May 1994. Two indices, the Sighting Index (SI) and the Total Recorded Dolphin Presence (TRDP), were used to quantify the dolphins' daylight occurrence. Humpback dolphins display a clear pattern of daylight occurrence in Algoa Bay and can be seen mostly in the morning, and, to a lesser extent, in the evening. This pattern varies little between seasons (with possible exception for the evening hours), follows the time of the solar day, is not related to the tidal cycle and is probably governed by the diurnal cycles of dolphins' prey.