Lift as a mechanism of patch initiation in mussel beds

The mussel Mytilus californianus is the dominant competitor for space in the mid-intertidal zone of wave-swept rocky shores in the Pacific Northwest where it forms extensive tightly packed beds. The rate at which patches are formed in these beds, can play an important rôle in community ecology by controlling the establishment and persistence of fugitive species. Despite the biological importance of physical disturbance, the mechanism of patch initiation has not been adequately explained. Battering by logs can create patches, but is the predominant mechanism only on shores near active logging sites. In other areas, it has been speculated that the hydrodynamic forces associated with storm waves somehow cause patches to form. However, the forces acting along the direction of flow — drag and the acceleration reaction — are unlikely to initiate patch formation. Here, it is suggested that fluid-dynamic lift forces imposed on mussel beds by breaking waves are sufficient to dislodge individual mussels and trigger patch formation. Arguments are presented suggesting that the likelihood of dislodgment by lift is consistent with the observed rate of patch formation in the absence of log battering.     

An assessment of possible pollution effects over a century on the benthic marine algae of Co. Durham, England

Durham provided an excellent opportunity to study possible effects of pollution on marine algae, since it has one of the most polluted shores in Britain and extensive herbarium collections of algae from between 1793 and 1864, prior to the dramatic rise in pollution. A contemporary total of 128 species is low for a 48 km coastline with rocky outcrops, but is probably due to a uniformly wave-swept shore that lacks sheltered bays and to the large amounts of natural sediment from the predominantly magnesian limestone rocks and the intervening sandy beaches and, more recently, of pollution-derived sediment. There has been only an estimated 16.6% reduction in common species over the past century, which is surprising in view of the dramatic increase in industrialization and urbanization. Thus, it appears that pollution has only a minimal effect on species diversity on open coasts where there is good water circulation.     

Life in the maelstrom: The biomechanics of wave-swept rocky shores

Nowhere on earth is water motion more violent than in the surf zone of rocky shores, and the hydrodynamic stresses imposed on plants and animals by wave-induced flows far exceed any in terrestrial or oceanic environments. Despite the harshness of the physical environment, wave-swept habitats support persistent, diverse communities. Knowledge of the physical mechanisms by which water motion affects plants and animals and of the ways in which they cope with their environment is essential for understanding the community ecology of these turbulent habitats.     

Getting a grip on the intertidal: flow microhabitat and substratum type determine the dislodgement of the crab Pachygrapsus crassipes (Randall) on rocky shores and in estuaries

Hydrodynamic forces can affect survival as well as limit the movement of motile benthic animals. An animal's danger of dislodgement depends on the hydrodynamic forces it experiences in its microhabitat relative to the force required to dislodge it (tenacity) from the substratum. We measured water flow and substratum characteristics in two different habitats of the shore crab Pachygrapsus crassipes: a wave-swept rocky shore and an intertidal mudflat. The maximum water velocities and accelerations in the microhabitats of the crabs at the wave-swept site were three times and two times greater, respectively, than at the mudflat site. In the laboratory, we measured the tenacity of crabs of various sizes on different substrata, and also measured their drag, lift and added-mass coefficients. Using these data, we calculated the flow conditions under which crabs would be overturned or sheared off the substratum in their two habitats. The net horizontal force (drag plus acceleration reaction) required to dislodge a crab on a rugose rock substratum was an order of magnitude greater than on smooth rock and two orders of magnitude greater than on mud. Our calculations indicate that, under non-storm conditions, crabs will not be dislodged from the substratum in either the mudflat or the wave-swept habitat when grasping the substratum with maximum tenacity. Moving crabs have lower tenacity and our calculations predict that hydrodynamic forces will restrict the mobility of large crabs more than that of small ones on smooth, but not on rugose rock.     

Dramatic phenotypic plasticity in barnacle legs (Balanus glandula Darwin): magnitude,age dependence,and speed of response

Abstract.— The precise dependence of barnacle leg form on flow suggests the wave-swept environment imposes strong selection on suspension feeding limbs. I conducted three experiments to determine the mechanism, age dependence, and response time of cirrus variation in the acorn barnacle Balanus glandula . (1) To test whether cirrus variation arises via genetic or environmental mechanisms, I transplanted juvenile barnacles from one wave-exposed and one protected population into high and low flow conditions. Both populations exhibited similar abilities to modify cirri in response to experimental velocities: transplanted barnacles grew legs up to 84% longer in low flow. A small (up to 24%), but significant difference between source populations suggested slight genetic divergence in leg form. (2) Because flow is heterogeneous over space and time, I tested whether cirrus plasticity was limited to juveniles by transplanting both juveniles and adults from exposed and protected shores into quiet water. Remarkably, both juveniles and adults from the wave-exposed population produced legs over 100% longer than the original population, whereas protected barnacles remained unchanged. (3) A third transplant of adults into quiet water demonstrated that wave-exposed B. glandula modified cirrus form very quickly-within 18 days, or one to two molts. Results from these experiments suggest that variation in cirrus form is largely environmentally induced, but genetic differences may account for some variation observed among field populations; spatial and temporal flow heterogeneity appear to have selected for extreme flexibility of feeding form throughout a barnacle's life; and flow heterogeneity in the wave-swept environment appears to have selected for rapid ecophenotypic responses in the form of feeding structures.     

Red algae respond to waves: morphological and mechanical variation in Mastocarpus papillatus along a gradient of force

Intertidal algae are exposed to the potentially severe drag forces generated by crashing waves, and several species of brown algae respond, in part, by varying the strength of their stipe material. In contrast, previous measurements have suggested that the material strength of red algae is constant across wave exposures. Here, we reexamine the responses to drag of the intertidal red alga Mastocarpus papillatus Kutzing. By measuring individuals at multiple sites along a known force gradient, we discern responses overlooked by previous methods, which compared groups of individuals between "exposed" and "protected" sites. This improved resolution reveals that material strength and stipe cross-sectional area are both positively correlated with drag, suggesting that individual blades or populations can adjust either or both of these parameters in response to their mechanical environment. The combined effect of this variation is a stipe breaking force that is positively correlated with locally imposed drag. Owing to this response to drag, the estimated wave-imposed limit to thallus size in M. papillatus is larger than previously predicted and larger than sizes observed in the field, indicating that factors other than wave force alone constrain the size of this alga on wave-swept shores.     

Maximum entropy,logistic regression,and species abundance

There is considerable debate about the utility of statistical mechanics in predicting diversity patterns in terms of life history traits. Here, I reflect on this debate and show that a community is controlled by the balance of two opposite forces: the entropic part (the natural tendency of the system to be in the configuration with the highest possible entropy) and environmental, ecological and evolutionary constraints maintaining order (reducing entropy). The Boltzmann distribution law that can be derived from the maximum entropy formalism provides a fundamental model for linking species abundance to life history traits and environmental constraining factors. This model predicts a global pattern of diversity evenness along a latitudinal gradient. Although the Boltzmann distribution and the logistic regression models represent two fundamentally different approaches, the two models have an identical mathematical form. Their identical formalisms facilitate the interpretation of logistic regression models with statistical mechanics, and reveal several limitations of the maximum entropy formalism. I argued that although maximum entropy formalism is a promising tool for modeling species abundances and for linking microscopic quantities of individual life history traits to macroscopic patterns of diversity, it is necessary to revise the Boltzmann distribution law for successful prediction of species abundance.     

Genetic architecture sets limits on transgressive segregation in hybrid cichlid fishes

The role of hybridization in the evolution of animal species is poorly understood. Transgressive segregation is a mechanism through which hybridization can generate diversity and ultimately lead to speciation. In this report we investigated the capacity of hybridization to generate novel (transgressive) phenotypes in the taxonomically diverse cichlid fishes. We generated a large F2 hybrid population by crossing two closely related cichlid species from Lake Malawi in Africa with differently shaped heads. Our morphometric analysis focused on two traits with different selective histories. The cichlid lower jaw (mandible) has evolved in response to strong directional selection, and does not segregate beyond the parental phenotype. The cichlid neurocranium (skull) has likely diverged in response to forces other than consistent directional selection (e.g., stabilizing selection), and exhibits marked transgressive segregation in our F2 population. We show that the genetic architecture of the cichlid jaw limits transgression, whereas the genetic basis of skull shape is permissive of transgressive segregation. These data suggest that natural selection, acting through the genome, will limit the degree of diversity that may be achieved via hybridization. Results are discussed in the context of the broader question of how phenotypic diversity may be achieved in rapidly evolving systems.     

Drag reduction in wave-swept macroalgae: Alternative strategies and new predictions

? Premise of the study: Intertidal macroalgae must resist extreme hydrodynamic forces imposed by crashing waves. How does frond flexibility mitigate drag, and how does flexibility affect predictions of drag and dislodgement in the field? ? Methods: We characterized flexible reconfiguration of six seaweed species in a recirculating water flume, documenting both shape change and area reduction as fronds reorient. We then used a high-speed gravity-accelerated water flume to test our ability to predict drag under waves based on extrapolations of drag recorded at slower speeds. We compared dislodgement forces to drag forces predicted from slow- and high-speed data to generate new predictions of survivorship and maximum sustainable frond size along wave-swept shores. ? Key results: Bladed algae were generally "shape changers", limiting drag by reducing drag coefficients, whereas the branched alga Calliarthron was an "area reducer", limiting drag by reducing projected area in flow. Drag predictions often underestimated actual drag measurements at high speeds, suggesting that slow-speed data may not reflect the performance of flexible seaweeds under breaking waves. Several seaweeds were predicted to dislodge at similar combinations of velocity and frond size, suggesting common scaling factors of dislodgement strength and drag. ? Conclusions: Changing shape and reducing projected area in flow are two distinct strategies employed by flexible seaweeds to resist drag. Flexible reconfiguration contributes to the uncertainty of drag extrapolation, and researchers should use caution when predicting drag and dislodgement of seaweeds in the field.     

EVOLUTION OF HOST-PARASITE DIVERSITY

Hosts and parasites often have extensive genetic diversity for resistance and virulence (host range). Qualitative diversity occurs when the success of attack is an all-or-nothing response that varies according to the genotypes of the host and parasite. Quantitative diversity occurs when the success of attack is a graded response that depends on additive genetic variation in the host and parasite. Community diversity occurs when parasites vary in the success with which they can attack different host species, leading to a mixture of specialists and generalists. I developed a series of models that classify components of host-parasite interactions according to whether they cause stabilizing or disruptive selection for resistance and virulence. Stabilizing selection reduces diversity by favoring a single optimal phenotype. Disruptive selection creates diversity by favoring a mixture of widely separated phenotypes. The evolution of maximal resistance and virulence are opposed by one of three forces: metabolic costs, frequency dependence, or negative genetic correlations among beneficial traits. The models predict that qualitatively inherited resistance and virulence traits typically cause greater diversity than quantitatively inherited traits. However, each natural system is composed of many stabilizing factors that reduce diversity and disruptive factors that promote diversity. I advocate a style of modeling in which families of related assumptions are compared by their equilibrium properties, and general conclusions from equilibrium properties are tested by complete dynamical analysis. The comparison among models highlights the need for empirical studies that compare levels of diversity among related host-parasite systems.     

Engineering novel habitats on urban infrastructure to increase intertidal biodiversity

Urbanization replaces natural shorelines with built infrastructure, seriously impacting species living on these “new” shores. Understanding the ecology of developed shorelines and reducing the consequences of urban development to fauna and flora cannot advance by simply documenting changes to diversity. It needs a robust experimental programme to develop ways in which biodiversity can be sustained in urbanized environments. There have, however, been few such experiments despite wholesale changes to shorelines in urbanized areas. Seawalls––the most extensive artificial infrastructure––are generally featureless, vertical habitats that support reduced levels of local biodiversity. Here, a mimic of an important habitat on natural rocky shores (rock-pools) was experimentally added to a seawall and its impact on diversity assessed. The mimics created shaded vertical substratum and pools that retained water during low tide. These novel habitats increased diversity of foliose algae and sessile and mobile animals, especially higher on the shore. Many species that are generally confined to lowshore levels, expanded their distribution over a greater tidal range. In fact, there were more species in the constructed pools than in natural pools of similar size on nearby shores. There was less effect on the abundances of mobile animals, which may be due to the limited time available for recruitment, or because these structures did not provide appropriate habitat. With increasing anthropogenic intrusion into natural areas and concomitant loss of species, it is essential to learn how to build urban infrastructure that can maintain or enhance biodiversity while meeting societal and engineering criteria. Success requires melding engineering skills and ecological understanding. This paper demonstrates one cost-effective way of addressing this important issue for urban infrastructure affecting nearshore habitats. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Restoring macrophyte diversity in shallow temperate lakes: biotic versus abiotic constraints

Although many lake restoration projects have led to decreased nutrient loads and increased water transparency, the establishment or expansion of macrophytes does not immediately follow the improved abiotic conditions and it is often unclear whether vegetation with high macrophyte diversity will return. We provide an overview of the potential bottlenecks for restoration of submerged macrophyte vegetation with a high biodiversity and focus on the biotic factors, including the availability of propagules, herbivory, plant competition and the role of remnant populations. We found that the potential for restoration in many lakes is large when clear water conditions are met, even though the macrophyte community composition of the early 1900s, the start of human-induced large-scale eutrophication in Northwestern Europe, could not be restored. However, emerging charophytes and species rich vegetation are often lost due to competition with eutrophic species. Disturbances such as herbivory can limit dominance by eutrophic species and improve macrophyte diversity. We conclude that it is imperative to study the role of propagule availability more closely as well as the biotic interactions including herbivory and plant competition. After abiotic conditions are met, these will further determine macrophyte diversity and define what exactly can be restored and what not.     

Differences in woody vegetation are unrelated to use by African elephants (Loxodonta africana) in Mkhuze Game Reserve, South Africa

The reintroduction of African elephants into fenced game reserves throughout South Africa has presented managers with several challenges. Although elephants are a natural part of southern African ecosystems, their confinement to fenced protected areas in South Africa has exacerbated their potential to impact their habitats negatively. However, many studies investigating the impact of elephants have failed to control for the effects of other browsers on the vegetative community. In this study, we used location data on an elephant herd to delineate high-use and low-use areas. This paired design allowed us to minimize confounding factors that could explain differences in the structure, diversity and utilization of woody species. We found little evidence to suggest elephant-mediated change in, or selection for, the structure or diversity of woody species; however, our results suggest that elephants may be altering the composition of species by preferentially using areas with higher canopy diversity and by enhancing sapling recruitment. Although stripping of bark was higher in high-use areas, there was no evidence of differential mortality of tree species. Therefore, in our study area, and over the current time scale, elephants are having a negligible impact on the vegetative community.     

Cuticular pheromones and water balance in the house fly,Musca domestica

Epicuticular lipids serve two major roles in insects. Their waterproofing properties are crucial to survival in terrestrial environments, and they serve as contact pheromones in a wide array of taxa. Both functions may be affected by the physical properties of the surface lipids. This provides the opportunity for natural selection on water conservation, mediated by lipid phase behavior, to interact with and perhaps conflict with sexual selection on communication and mate recognition. We used the common house fly, Musca domestica, as a model for these interacting selective forces. Male house flies preferred female models treated with a high melting-point lipid mixture, suggesting that sexual and natural selection may both act to favor longer-chain, more saturated hydrocarbons. However, higher melting points did not result in lower rates of water loss. We propose a working model in which phase separation between the unsaturated female pheromone and saturated hydrocarbons results in areas of melted, pheromone-rich lipids and regional variation in cuticular permeability.     

Convergent adaptation to a marginal habitat by homoploid hybrids and polyploid ecads in the seaweed genus Fucus

Hybridization and polyploidy are two major sources of genetic variability that can lead to adaptation in new habitats. Most species of the brown algal genus Fucus are found along wave-swept rocky shores of the Northern Hemisphere, but some species have adapted to brackish and salt marsh habitats. Using five microsatellite loci and mtDNA RFLP, we characterize two populations of morphologically similar, muscoides-like Fucus inhabiting salt marshes in Iceland and Ireland. The Icelandic genotypes were consistent with Fucus vesiculosus x Fucus spiralis F1 hybrids with asymmetrical hybridization, whereas the Irish ones consisted primarily of polyploid F. vesiculosus.     

Connecting recombination,nucleotide diversity,and species divergence in Drosophila

The association between recombination rate and nucleotide diversity provides compelling evidence for the action of natural selection across much of the Drosophila melanogaster genome. This conclusion is further supported by the lack of association between recombination rate and nucleotide divergence between species. However, studies of other species, including other Drosophila, have not always yielded the same results. Our recent study measured these parameters within the D. pseudoobscura species group using next-generation sequencing and high-throughput genotyping technologies. We documented fine-scale variation in crossover rate within D. pseudoobscura, and we observed that crossover variation was strongly associated with nucleotide diversity only when measured at a fine-scale. We also observed associations between crossover rate and sequence differences between D. pseudoobscura and its close relatives. These latter associations could have been driven in part by mutagenic effects associated with double-strand break repair, but we cannot exclude the possibility that it results primarily from shared ancestral polymorphisms. Overall, this work strongly underscores the importance of scale in testing for associations of recombination rate with other parameters, and it brings us one small step closer to understanding the role of natural selection and other evolutionary forces in shaping divergence among genomes.     

On the relative roles of selection and genetic drift in shaping MHC variation

Genes of the major histocompatibility complex (MHC) have provided some of the clearest examples of how natural selection generates discordances between adaptive and neutral variation in natural populations. The type and intensity of selection as well as the strength of genetic drift are believed to be important in shaping the resulting pattern of MHC diversity. However, evaluating the relative contribution of multiple microevolutionary forces is challenging, and empirical studies have reported contrasting results. For instance, balancing selection has been invoked to explain high levels of MHC diversity and low population differentiation in comparison with other nuclear markers. Other studies have shown that genetic drift can sometimes overcome selection and then patterns of genetic variation at adaptive loci cannot be discerned from those occurring at neutral markers. Both empirical and simulated data also indicate that loss of genetic diversity at adaptive loci can occur faster than at neutral loci when selection and population bottlenecks act simultaneously. Diversifying selection, on the other hand, explains accelerated MHC divergence as the result of spatial variation in pathogen‐mediated selective regimes. Because of all these possible scenarios and outcomes, collecting information from as many study systems as possible, is crucial to enhance our understanding about the evolutionary forces driving MHC polymorphism. In this issue, Miller and co‐workers present an illuminating contribution by combining neutral markers (microsatellites) and adaptive MHC class I loci during the investigation of genetic differentiation across island populations of tuatara Sphenodon punctatus. Their study of geographical variation reveals a major role of genetic drift in shaping MHC variation, yet they also discuss some support for diversifying selection.     

Distinct evolutionary strategies of human leucocyte antigen loci in pathogen-rich environments

Human leucocyte antigen (HLA) loci have a complex evolution where both stochastic (e.g. genetic drift) and deterministic (natural selection) forces are involved. Owing to their extraordinary level of polymorphism, HLA genes are useful markers for reconstructing human settlement history. However, HLA variation often deviates significantly from neutral expectations towards an excess of genetic diversity. Because HLA molecules play a crucial role in immunity, this observation is generally explained by pathogen-driven-balancing selection (PDBS). In this study, we investigate the PDBS model by analysing HLA allelic diversity on a large database of 535 populations in relation to pathogen richness. Our results confirm that geographical distances are excellent predictors of HLA genetic differentiation worldwide. We also find a significant positive correlation between genetic diversity and pathogen richness at two HLA class I loci (HLA-A and -B), as predicted by PDBS, and a significant negative correlation at one HLA class II locus (HLA-DQB1). Although these effects are weak, as shown by a loss of significance when populations submitted to rapid genetic drift are removed from the analysis, the inverse relationship between genetic diversity and pathogen richness at different loci indicates that HLA genes have adopted distinct evolutionary strategies to provide immune protection in pathogen-rich environments.     

Bottom-up and cascading top-down control of macroalgae along a depth gradient

On marine rocky shores, macroalgal herbivory is often intense, such that the cascading effects of fish predation may contribute to the control of algal communities. To estimate the magnitudes of top-down and bottom-up control on a macroalgal community, we manipulated the access of carnivorous fish to macroalgal colonization substrates, as well as nutrient availability, at two sub-littoral depths. There were three levels of fish manipulation: natural fish community, no fish and the enclosure of one common species, the perch, Perca fluviatilis. We found a clear cascade effect of fish predation on both the total density and several individual species of macroalgae, which was more pronounced in deep than shallow water. The density of the dominant grazers, i.e. snails, increased in nutrient-enriched conditions; perch were inefficient in controlling herbivores, and had therefore no cascading effect on algal densities under such conditions. Although nutrients enhanced the growth of opportunistic algae, herbivores, in the absence of fish, inhibited this response. While algal diversity was higher in shallow than in deep water, the enrichment effect was opposite at the two depths with lowered diversity in the shallows and increased at depth. Our results indicate that fish predation is an efficient regulator of meso-herbivores and that its effect thereby cascades onto the producer trophic level such that both perennial and opportunistic algae benefit from the presence of fish. This cascade effect is probably stronger at depth where predation efficiency is less disturbed by wave motion.     

Comparative analysis of population structure across environments and geographical scales at major histocompatibility complex and microsatellite loci in Atlantic salmon (Salmo salar)

Evidence of selection acting on major histocompatibility complex (MHC) genes has been illustrated with the analysis of their nucleotide sequences and allele frequency distribution. Comparing the patterns of population differentiation at neutral markers and MHC genes in the wild may provide further insights about the relative role of selection and neutrality in shaping their diversity. In this study, we combine both methods to assess the role of selection on a MHC gene in Atlantic salmon. We compare variation at a MHC class II B locus and microsatellites among 14 samples from seven different rivers and seven subpopulations within a single river system covering a variety of habitats and different geographical scales. We show that diversifying selection is acting on the sites involved in antigen presentation and that balancing selection maintains a high level of polymorphism within populations. Despite important differences in habitat type, the comparison of the population structure at MHC and microsatellites on large geographical scales reveals a correlation between patterns of differentiation, indicating that drift and migration have been more important than selection in shaping population differentiation at the MHC locus. In contrast, strong discrepancies between patterns of population differentiation at the two types of markers provides support for the role of selection in shaping population structure within rivers. Together, these results confirm that natural selection is influencing MHC gene diversity in wild Atlantic salmon although neutral forces may also be important in their evolution.