PDADMAC as a flocculant for lignosulfonate of NSSC pulping process

The spent liquor (SL) of neutral sulfite semi‐chemical (NSSC) pulping process contains about 8 wt% lignocelluloses that can be extracted and used in the production of value‐added materials. In this work, a flocculation process followed by centrifugation was considered for isolating lignosulfonate and hemicelluloses from SL. It was observed that, by adding 20 mg/g of polydiallyldimethylammuniom chloride (PDADMAC) with 100,000–200,000 g/mol molecular weight to SL, 45% of lignosulfonate and 39% of hemicelluloses were removed at 30°C. The lignocellulose removal was more efficient for the dual flocculation system of low and high molecular weights PDADMAC than for individual PDADMAC systems. Overall, 49% of lignosulfonate, 47% of hemicelluloses and 97% of turbidity were removed from SL from the dual system when 10 mg/g low molecular weight PDADMAC and 10 mg/g high molecular weight PDADMAC were added to the SL at 30°C, subsequently. The thermogravimetric analysis (TGA) of generated flocs showed that all samples had similar thermal behaviour and 13–16 wt% of flocs remained as ash after burning at 700°C in nitrogen. As the flocs are made of lignocellulosic materials and they are thermally stable, they could be used as fillers in paper board production. © 2016 American Institute of Chemical Engineers Biotechnol. Prog., 32:686–691, 2016     

High‐titer production and strong antimicrobial activity of sophorolipids from Rhodotorula bogoriensis

Rhodotorula bogoriensis produces sophorolipids (SLs) that contain 13‐hydroxydocosanoic acid (OH‐C₂₂) as the lipid moiety. A systematic study was conducted to further understand the fermentative production of SLs containing OH‐C₂₂ (C₂₂‐SL) by R. bogoriensis. Shake‐flask studies showed that R. bogoriensis consumed glucose at a slow pace. HPLC analysis of the C₂₂‐SL products from shake‐flask fermentations at different glucose concentrations showed a correlation between glucose depletion and the extent of C₂₂‐SL deacetylation. A large‐scale bioreactor fermentation resulted in the isolation of C₂₂‐SL at a volumetric product yield of 51 g/L. HPLC analysis of C₂₂‐SL product from the bioreactor fermentation corroborated the finding that glucose depletion correlated with extensive deacetylation of C₂₂‐SL. The antimicrobial activity of C₂₂‐SL was established for the first time to be stronger than the C₁₈‐SL from Candida bombicola against Propionibacterium acnes in a plate assay. © 2015 American Institute of Chemical Engineers Biotechnol. Prog., 31:867–874, 2015     

Gonadosomatic index‐based size at first sexual maturity and fecundity indices of the Indian River shad Gudusia chapra (Clupeidae) in the Ganges River (NW Bangladesh)

The present study aims to estimate the size at first sexual maturity and fecundity for female Gudusia chapra from the lower Ganges River, northwestern Bangladesh. A total of 250 female specimens, 3.60–13.70 cm in standard length (SL) and 1.00–43.60 g in body weight (BW), were collected during March–August 2006. The gonadosomatic index (GSI) for females was calculated by the equation, GSI (%) = (GW/BW) × 100. The size at first sexual maturity of females was estimated by the relationship between their gonadosomatic index and standard length. The specimen larger (≥8.00 cm in SL) than first size at sexual maturity was used for the estimation of fecundity. The size at first sexual maturity for female G. chapra was considered to be 8.00 cm SL in the Ganges River. The mean total fecundity was 20200 ± 6500 and ranged from 10800 to 36200. This study should be useful for fisheries biologists/managers to impose adequate regulations for sustainable‐fishery management in the Ganges River and elsewhere in Bangladesh.     

Reproductive guilds (maturation,spawning frequency and fecundity) in the black pomfret,Parastromateus niger (Carangidae) in the Kuwaiti waters of the Arabian Gulf

Oogenesis, oocyte maturation pattern, spawning rhythm, spawning frequency, batch fecundity and oocyte diameter–frequency distribution of the black pomfret, Parastromateus niger (Bloch, 1795) in Kuwaiti waters were investigated from October 2003 to September 2005, using histological and morphological methods. The process of development is divided into four major phases: (i) primary growth phase; (ii) secondary growth phase; (iii) maturation phase; and (iv) spawning phase, followed by the regressed phase. Development of the yolky oocyte is an asynchronous process resulting, by the time of oocyte maturation, in a clear differentiation between a ready batch of oocytes (ready for spawning) and a reserve pool. Consequently, P. niger is capable of spawning multiple times throughout the reproductive season. Spawning frequency estimates, based on final oocyte maturation (FOM) method indicated that the species spawns once every 2.8 days during an 8‐month spawning season lasting from February to September, with a potential annual number of 22.4 spawns. Batch fecundity (BF) (2132–2001 648, mean 406 010 eggs), was significantly positively related to both standard length (SL) (P < 0.05) and ovary‐free body weight (OFBW) (P < 0.05), both parameters being good predictors of BF (r² = 30.8% for SL, from 22 cm onwards, and r² = 29.6% for OFBW, from 129.5 g onwards). No significant differences in monthly BF were found throughout the spawning season. Relative batch fecundity was 336 eggs/g OFBW; thus, estimate for potential annual relative batch fecundity was 7526 eggs g^?1 OFBW. The oocyte diameter–frequency distribution analysis revealed a multimodal distribution (at 100–200, 300–400 and 500–700 μm), confirming the evidence of multiple spawning.     

Carbon Anionic Chiral Initiators for Asymmetric Anionic Polymerization of Achiral Isocyanates

Novel optically active carbon anionic initiators bearing a chiral oxazole substituent on fluorene ring, (S)‐1‐(9H‐fluoren‐2‐yl)‐4‐isopropyl‐4, 5‐dihydrooxazole lithium ((S)‐1‐FIDD‐Li) and (S)‐2‐(9H‐fluoren‐2‐yl)‐4‐isopropyl‐4, 5‐dihydrooxazole lithium ((S)‐2‐FIDD‐Li), were synthesized. Anionic polymerizations of achiral polyisocyanates with the chiral initiators were investigated and optical rotation of the obtained polymers were attributed to asymmetric induction of the chiral initiators. The crowded substituent of initiator ((S)‐2‐FIDD‐Li) seems to reduce the polymerizability of isocyanates and yet enhances the chiral induced ability in polymerization. Chirality 27:449–453, 2015. © 2015 Wiley Periodicals, Inc.     

Relative growth and sexual dimorphism in the hermit crab Clibanarius signatus Heller, 1861 (Anomura,Diogenidae) from the northern coast of the Persian Gulf,Iran

The purpose of this study was to investigate the relative growth and sexual dimorphism in the hermit crab Clibanarius signatus. The evaluation was done with 955 specimens (494 males, 251 females, and 210 intersexes) captured in Persian Gulf (Iran) during January to December 2015. Animals were submitted to measurements related to weight (BW, total wet weight) and body size related to cephalic shield (SW, width; and SL, length) and propodus of both chelipeds (CPL, length; and CPW, width). Males were larger and heavier than females and intersexes. Both males and females showed a negative allometric growth for the SL–BW and SL–SW relationships, but a positive allometric growth to intersex specimens. To SL–CPL relationship, a negative allometric growth was confirmed in males and females independent of the laterality of the CPL, whereas a contrast was verified in intersexes, with a positive allometric growth occurred for both hands. To SL–CPW relationship, a negative allometric growth (b < 1) occurred in females, independent of the laterality of the CPW, while in males, a positive allometric pattern was confirmed. In intersexes, this relationship was positive except for the right CPW which was isometric. Sexual dimorphism was evident in Clibanarius signatus, with males being the largest and females the smallest specimens in the population.     

Caprylic acid‐induced impurity precipitation from protein A capture column elution pool to enable a two‐chromatography‐step process for monoclonal antibody purification

This article presents the use of caprylic acid (CA) to precipitate impurities from the protein A capture column elution pool for the purification of monoclonal antibodies (mAbs) with the objective of developing a two chromatography step antibody purification process. A CA‐induced impurity precipitation in the protein A column elution pool was evaluated as an alternative method to polishing chromatography techniques for use in the purification of mAbs. Parameters including pH, CA concentrations, mixing time, mAb concentrations, buffer systems, and incubation temperatures were evaluated on their impacts on the impurity removal, high‐molecular weight (HMW) formation and precipitation step yield. Both pH and CA concentration, but not mAb concentrations and buffer systems, are key parameters that can affect host–cell proteins (HCPs) clearance, HMW species, and yield. CA precipitation removes HCPs and some HMW species to the acceptable levels under the optimal conditions. The CA precipitation process is robust at 15–25°C. For all five mAbs tested in this study, the optimal CA concentration range is 0.5–1.0%, while the pH range is from 5.0 to 6.0. A purification process using two chromatography steps (protein A capture column and ion exchange polishing column) in combination with CA‐based impurity precipitation step can be used as a robust downstream process for mAb molecules with a broad range of isoelectric points. Residual CA can be effectively removed by the subsequent polishing cation exchange chromatography. © 2015 American Institute of Chemical Engineers Biotechnol. Prog., 31:1515–1525, 2015     

Length–length and length–weight relationships for eight drum species in southeastern Louisiana

Length–length and length–weight relationships can vary temporally and spatially, so it is imperative that accurate estimates of these relationships are available. Total length–standard length (TL‐SL) and standard length–total weight (SL–TW) relationships were calculated for eight species of drum (Sciaenidae) occurring in estuaries of southeastern Louisiana. Data were derived from monthly trawl, beach seine, and gillnet collections taken in and around Lake Pontchartrain between 2000 and 2012. Overall TL–SL relationships (ignoring the month) were found for seven species and overall SL–TW relationships were found for eight species. The strong r² values (all > 0.950, except for one instance) indicate that these relationships are robust and will be appropriate for use by scientists managing these species.     

Length‐weight relationship of fish species from the Bijagós Archipelago,Guinea‐Bissau

Length–weight relationships were estimated for six teleost fish species occurring in Bijagós Archipelago, Guinea‐Bissau. Samples were collected seasonally during three dry seasons (2013/2014, 2014/2015, 2015/2016) and two rainy seasons (2015 and 2016). Fishes were captured by three methods: angled from the beach or a boat; using beach seine with a mesh size ranging 0.5–1 cm; drift netting from a boat (mesh size 2 cm). This work provides the length‐weight relationship for three fish species that are not reported in FishBase (Citharichthys stampflii, Gerres nigri and Psettodes belcheri) as well as for three species from which we present a wider size range (Eucinostomus melanopterus, Scomberomorus tritor and Sphyraena afra).     

ChIP‐seq and transcriptome analysis of the OmpR regulon of Salmonella enterica serovars Typhi and Typhimurium reveals accessory genes implicated in host colonization

OmpR is a multifunctional DNA binding regulator with orthologues in many enteric bacteria that exhibits classical regulator activity as well as nucleoid‐associated protein‐like characteristics. In the enteric pathogen Salmonella enterica, using chromatin immunoprecipitation of OmpR:FLAG and nucleotide sequencing, 43 putative OmpR binding sites were identified in S. enterica serovar Typhi, 22 of which were associated with OmpR‐regulated genes. Mutation of a sequence motif (TGTWACAW) that was associated with the putative OmpR binding sites abrogated binding of OmpR:6×His to the tviA upstream region. A core set of 31 orthologous genes were found to exhibit OmpR‐dependent expression in both S. Typhi and S. Typhimurium. S. Typhimurium‐encoded orthologues of two divergently transcribed OmpR‐regulated operons (SL1068–71 and SL1066–67) had a putative OmpR binding site in the inter‐operon region in S. Typhi, and were characterized using in vitro and in vivo assays. These operons are widely distributed within S. enterica but absent from the closely related Escherichia coli. SL1066 and SL1067 were required for growth on N‐acetylmuramic acid as a sole carbon source. SL1068–71 exhibited sequence similarity to sialic acid uptake systems and contributed to colonization of the ileum and caecum in the streptomycin‐pretreated mouse model of colitis.     

三峡水库光泽黄颡鱼年龄、生长与死亡特征研究

光泽黄颡鱼(Pelteobagrus nitidus Sauvage et Dabry)是三峡水库蓄水后的优势中小型底层鱼类之一,为解析其种群特征,基于2015—2016年在三峡水库采集的鱼类样本(n=2477),对其年龄与生长等进行了研究.光泽黄颡鱼的平均体长为(87.1±0.5)mm,不表现雌雄异形.库尾种群的平均...     

Development of a Validated LC Method for Separation of Process‐Related Impurities Including the R‐enantiomer of S‐Pramipexole on Polysaccharide Chiral Stationary Phases

Despite the availability of a few methods for individual separation of S‐pramipexole from its process‐related impurities, no common liquid chromatography (LC) method is reported so far in the literature. The present article describes the development of a single‐run LC method for simultaneous determination of S‐pramipexole and its enantiomeric and process‐related impurities on a Chiralpak AD‐H (150 x 4.6 mm, 5μm) column using n‐hexane/ethanol/n‐butylamine (75:25:0.1 v/v/v) as a mobile phase in an isocratic mode of elution at a flow rate of 1.2 ml/min at 30°C. The chromatographic eluents were monitored at a wavelength of 260 nm using a photodiode array detector. Excellent enantioseparation with good resolutions (Rs ≥ 2.88) and peak shapes (A_s ≤ 1.21) for all analytes was achieved. The proposed method was validated according to International Conference Harmonization (ICH) guidelines in terms of accuracy, precision, sensitivity, and linearity. Limits of quantification of impurities (0.25–0.55 μg/ml) indicate the highest sensitivity achievable by the proposed method. The method has an advantage of selectivity and suitability for routine determination of not only chiral impurity but also all possible related substances in active pharmaceutical ingredients of S‐pramipexole. Chirality 27:430–435, 2015. © 2015 Wiley Periodicals, Inc.     

Production of 2,3‐butanediol by Klebsiella oxytoca from various sugars in microalgal hydrolysate

A new fermentation process using a mixed sugar medium is proposed in this study for 2,3‐butanediol (2,3‐BDO) production. The medium contained seven different monosugars known to be present in Nannochloropsis oceanica hydrolysate. The performance of each sugar when existing alone or together with glucose was evaluated. All the sugars except fucose were successfully metabolized for 2,3‐BDO production. A 2,3‐BDO yield of 0.31g/g was achieved with the mixed sugar medium, which was very close to that with the glucose‐only medium. However, the 2,3‐BDO productivity (0.28 g L^?1 h^?1) was found to be about 30% lower than that with glucose, implying, as expected, the existence of glucose repression on the uptake of other sugars. Strain development is in need to remove such negative effect of glucose for improved process efficiency. Fucose with the lowest uptake rate and no contribution to 2,3‐BDO production can be a high value‐added byproduct, once recovered and purified. © 2015 American Institute of Chemical Engineers Biotechnol. Prog., 31:1669–1675, 2015     

Exopolysaccharides produced by Z. ramigera mutants and analysis of structural change by solution properties

Summary The exopolysaccharides produced by Z. ramigera mutants were purified by the precipitation with isopropyl alcohol and characterized. The physiological changes of mutant cells resulted the changes in the structure of the product, Zooglan, which could be determined by the measurement of hydrodynamic properties.Zooglans produced by Z. ramigera SL, SLR and MM1 gave intrinsic viscosities of 14.3 dl/g, 12.2 dl/g and 9.1 dl/g, respectively. The intrinsic viscosity of Zooglan produced by Z. ramigera MM1/pLEX2F increased to 14.8 dl/g. The hydrodynamic property expressed as the intrinsic viscosity of Zooglans could explain the alteration of the structure of Zooglan synthesized by the physiological activities of the mutant cells.     

Length–weight relationship of 12 fish species from the Lhasa River and surrounding area in Tibet,China

Presented are the relationship between standard length (SL) and weight (W) for 12 fish species in Tibet, China, representing three families and six genera from the Lhasa River. All fish samples were collected by either electro‐shocker (12 V, 200 Hz), fish cages (mouth opening: 40 × 40 cm², 5 m), or drift gillnets (3 × 1.5 m; mesh‐size: 3 cm to 8 cm) from different areas in the Lhasa River Basin, August and September 2015. Parameter b ranged from 2.88 to 3.29, and all correlation coefficient (r²) values were higher than 0.95. Length–weight relationships (LWRs) for three of the species as well as one maximum length are first reports for FishBase.     

Fish by‐catch in shrimp beam trawls in the northern South China Sea

The by‐catch of shrimp beam trawl fisheries in the northern South China Sea were estimated during the 2005–2006 and 2012–2013 fishing seasons. A total of 98 hauls from three important shrimp fishing grounds were used in the analyses. A total of 119 by‐catch species were captured, compared with only 15 target species. The ratio of by‐catch to shrimp ranged from 1.01 to 13.90. The dominant standard length (SL) range of fish by‐catch was 51–100 mm. The percentage of juveniles in the total catch of some fish species was high (e.g. 100% for A. aneus).     

Length‐weight relationship of two mudskippers (Gobiidae: Oxudercinae) Oxuderces dentatus (Eydoux & Souleyet, 1850) and Scartelaos histophorus (Valenciennes, 1837) from Dhamara estuary,Odhisa, India

Oxuderces dentatus and Scartelaos histophorus species were collected seasonally from the Dhamara estuary (Odhisa, India) using scoop nets, cast nets as well as by hand for a period of 1 year (January 2015–December 2015). Length–weight relationships were estimated. Total lengths (TL) for O. dentatus ranged from 42 to 80 mm, and from 58 to 122 mm for S. histophorus. Similarly, total weights of O. dentatus and S. histophorus ranged from 2.5–10.7 g to 7.7–26.5 g, respectively. The ‘b’ values estimated for O. dentatus (2.718) and S. histophorus (2.689) were below 3. The condition factors of O. dentatus and S. histophorus were minimum in summer and maximum post‐monsoon.     

Antioxidant properties of a human neuropeptide and its protective effect on free radical‐induced DNA damage

Human catestatin CgA_352–372 (SL21) is an endogenous neuropeptide with multiple biological functions. The present study aimed to evaluate the antioxidant, antibacterial, cytotoxic, and DNA damage protective effects of SL21 neuropeptide. SL21 neuropeptide generated from the C‐terminus of chromogranin A (CgA) was synthesized by solid‐phase method. Synthetic peptide was subjected to various in vitro antioxidant assays including the scavenging of 1,1‐diphenyl‐2‐pycryl‐hydrazyl (DPPH), 2,2‐azino‐bis(3‐ethylbenzothiazoline‐6‐sulfonic acid) (ABTS^·+), and hydroxyl free radicals, metal ion chelation, inhibition of lipid peroxidation, and reducing power. Moreover, protective effect of SL21 on H₂O₂‐induced DNA damage was analyzed using pTZ57/RT plasmid. Methylthiazoltetrazolium assay was also performed to study the cytotoxic effect of SL21 neuropeptide on human peripheral blood mononuclear cells. Furthermore, antibacterial and hemolysis assays were conducted. The results demonstrated high activities of SL21 in scavenging free radicals (DPPH, ABTS^·+, and hydroxyl), chelating of Cu²⁺/Fe²⁺ metal ions, reducing power, and inhibition of lipid peroxidation in a concentration‐dependent manner. SL21 neuropeptide revealed a protective effect on DNA damage caused by hydroxyl radicals. Interestingly, the peptide exhibited no significant cytotoxicity towards peripheral blood mononuclear cells. Furthermore, SL21 peptide displayed antimicrobial activity against Staphylococcus aureus and Pseudomonas aeruginosa without any hemolytic activity on human red blood cells. Conclusively, the present study established SL21 (catestatin) as a novel antioxidative peptide that could further be investigated for its potential use as a pharmaceutical agent. Copyright © 2014 European Peptide Society and John Wiley & Sons, Ltd.     

Purification,characterization, and biological activities of broccolini lectin

Plant lectins have displayed a variety of biological activities. In this study, for the first time, a 27 kDa arabinose‐ and mannose‐specific lectin from Broccolini (Brassica oleracea Italica × Alboglabra), named as BL (Broccolini lectin), was purified by an activity‐driven protocol. Mass spectrometry analysis and database search indicated that no matches with any plant lectin were found, but BL contained some peptide fragments (QQQGQQGQQLQQVISR, QQGQQQGQQGQQLQQVISR and VCNIPQVSVCPF QK). BL exhibited hemagglutinating activity against chicken erythrocytes at 4 µg/mL. BL retained full hemagglutinating activity at pH 7–8 and temperature 30–40°C, and had an optimal activity in Ca²⁺ solution. Bioactivity assay revealed that BL exhibited dose‐dependent inhibition activity on 5 bacterial species with IC₅₀ values of 178.82–350.93 μg/mL. Notably, 5‐fold reduction in IC₅₀ values was observed on normal L‐O2 vs cancerous HepG‐2 cells (924.35 vs. 178.82 μg/mL). This suggests that BL should be promising in food and medicine. © 2015 American Institute of Chemical Engineers Biotechnol. Prog., 31:736–743, 2015