Plant genetic diversity yields increased plant productivity and herbivore performance

1.  Plant genotypic diversity has important consequences for a variety of ecosystem processes, yet empirical evidence for its effects on productivity, one of the most fundamental of these processes, is lacking. In addition, the performance of insect herbivores in response to high genotypic diversity is unknown, despite previous work demonstrating differential herbivore performance among plant genotypes.
2.  We manipulated genotypic diversity of the annual plant Arabidopsis thaliana in both the presence and absence of the generalist herbivore Trichoplusia ni under semi-natural growth conditions. We used nine genotypes (eight ecotypes and one mutant) of A. thaliana known to differ widely in functional traits. Productivity and insect biomass were measured in monocultures and mixtures of all nine genotypes grown at multiple fertilization levels and planting densities.
3.  In both the absence and presence of herbivores, genotypic diversity increased plant productivity and survival. This effect was, for the most part, independent of fertility or density. Sampling or selection effects did not appear to be wholly responsible for these results as all genotypes were maintained in equal proportion and no single genotype became dominant for the duration of the experiment.
4.  High diversity increased T. ni biomass and survival in all treatments. Insect biomass was positively, but not tightly, correlated to plant biomass, indicating that the higher herbivore performance observed in genotypic mixtures was only partially due to higher productivity.
5. Synthesis. Our data support the idea that even within a single plant species, genotypic diversity can exert strong influences on both the producer and herbivore communities. The exact mechanisms responsible for these effects and the relative importance of genotypic diversity in natural communities warrant further investigation.     

Factors controlling community structure in heterogeneous metacommunities

1.  Modern theories of species coexistence recognize the importance of environmental heterogeneity.
2.  Despite the existence of many observational studies, few experimental studies have evaluated the extent to which, and mechanisms by which, fixed spatial heterogeneity increases community diversity and alters community structure.
3  In experimental protist communities, we found that non-spatial mechanisms unrelated to heterogeneity were responsible for a large component of baseline diversity. Above this baseline, fixed spatial heterogeneity produced small but predictable increases in metacommunity diversity through species sorting, while heterogeneity and dispersal together altered local community structure (composition and relative abundance) through mass effects.
4.  Our study illustrates that heterogeneity is not always the strongest driver of diversity, while experimentally demonstrating mechanisms by which heterogeneity alters community structure.     

Plant genotypic diversity reduces the rate of consumer resource utilization

While plant species diversity can reduce herbivore densities and herbivory, little is known regarding how plant genotypic diversity alters resource utilization by herbivores. Here, we show that an invasive folivore—the Japanese beetle (Popillia japonica)—increases 28 per cent in abundance, but consumes 24 per cent less foliage in genotypic polycultures compared with monocultures of the common evening primrose (Oenothera biennis). We found strong complementarity for reduced herbivore damage among plant genotypes growing in polycultures and a weak dominance effect of particularly resistant genotypes. Sequential feeding by P. japonica on different genotypes from polycultures resulted in reduced consumption compared with feeding on different plants of the same genotype from monocultures. Thus, diet mixing among plant genotypes reduced herbivore consumption efficiency. Despite positive complementarity driving an increase in fruit production in polycultures, we observed a trade-off between complementarity for increased plant productivity and resistance to herbivory, suggesting costs in the complementary use of resources by plant genotypes may manifest across trophic levels. These results elucidate mechanisms for how plant genotypic diversity simultaneously alters resource utilization by both producers and consumers, and show that population genotypic diversity can increase the resistance of a native plant to an invasive herbivore.     

Temporal dynamics of genotypic diversity reveal strong clonal selection in the aphid Myzus persicae

Parthenogenetic organisms often harbour substantial genotypic diversity. This diversity may be the result of recurrent formations of new clones, or it may be maintained by environmental heterogeneity acting on ecological differences among clones. In aphids, both processes may be important because obligate and cyclical parthenogens can form mixed populations. Using microsatellites, I analysed the temporal dynamics of clonal diversity in such a population of the aphid Myzus persicae over a 1-year period. The frequency distribution of clonal genotypes was very skewed, with many rare and few common clones. The relative frequencies of common clones underwent strong and rapid changes indicative of intense clonal selection. Differences in their host associations suggest that these shifts may partly be caused by changes in the abundance of annual host plants. Other selective factors of potential importance are also discussed. New, sexually produced genotypes made a minor contribution to clonal diversity, consistent with the observed heterozygote excess characteristic of predominantly asexual populations in M. persicae.     

Intra-specific phenotypic and genotypic variation in toxic cyanobacterial Microcystis strains

Aims:  We determined if the intra-specific genetic diversity of Microcystis aeruginosa correlates with phenotypic characteristics.
Methods and Results:  Microcystis aeruginosa isolates from various Japanese waters were characterized using genetic analyses based on the 16S–23S rDNA internal transcribed spacer (ITS) region and DNA-independent RNA polymerase ( rpoC1 ) gene sequences. In addition, morphological and biochemical properties, and the toxicity of M. aeruginosa strains were determined. We found a correlation in phylogenetic clusters of the ITS region and rpoC1 gene sequences. Using a polyphasic approach, genotypic and phenotypic variations in M. aeruginosa showed that the three genetic lineage groups are comprised of a particular phenotype or subgroup of closely related phenotypes. However, some strains had high phenotypic and genotypic diversity compared to the three lineage groups and did not show distinct lineages; therefore, these strains were designated as the 'complex group'.
Conclusions:  The 'complex group' consisted of genetically and phenotypically incoherent and high diverse populations in M. aeruginosa , although some genotypes or lineages displayed consistent phenotypes.
Significance and Impact of the Study:  The polyphasic approach combining phenotypic and genetic characterization was effective for comprehending distinct lineages and discriminating the potential complexity of M. aeruginosa populations at the intra-species level.     

Dynamics of genotypic structure in clonal Rhododendron ferrugineum (Ericaceae) populations

Two populations of Rhododendron ferrugineum growing at subalpine level in the Pyrenees (France) were studied in two sites (Bethmale and Mourtis). Identification and delimitation of genets were inferred from amplified fragment length polymorphism (AFLP) markers, along a closure gradient (from meadow to more closed heath) in each site. Surface and age of genets, genotypic diversity (Simpson's index D), 'proportion distinguishable' genotypes and genetic relationships between genets were then estimated. Amplification of the 312 DNA samples with three selective primer pairs gave a mean of 98 detectable peaks (i.e. bands) per sample, with size ranging from 60 to 300 bp. In total 60% (Bethmale) and 70% (Mourtis) of the peaks were polymorphic, and a total of 31 and 23 multilocus genotypes were identified, in Bethmale and Mourtis, respectively. We inferred that pioneer genotypes began arriving 110 years ago mainly over a 40-year period in the Mourtis meadow, and began about 130 years ago over a 100-year period in the Bethmale meadow. After this pioneer stage, populations extended vegetatively. Two different patterns of genotypic dynamics can be identified. At Bethmale, population closure could have led to a dramatic loss of genets and to the selection of highly genetically related genotypes. In contrast, at Mourtis, genotypic diversity and genet density did not change fundamentally along the closure gradient. However the range of genetic diversity diminished from the open to the closed situation, suggesting that thinning could have occurred in the past.     

Phenotypic plasticity in host-plant specialisation in Aphis fabae

Abstract.  1. The study of phenotypic plasticity in host utilisation is crucial for predicting evolutionary patterns of insect – plant interactions. The presence of sufficient variation in plasticity may facilitate host race formation and sympatric speciation.
2.  Aphis fabae genotypes showed high levels of phenotypic plasticity in the intrinsic rate of natural increase ( r _m), relative growth rate (RGR), birth weight (BW), adult weight (AW), fecundity ( F ), and development time (1/ d ).
3. Thirteen A. fabae genotypes reared both on broad bean and nasturtium exhibited statistically significant genotypic variability in phenotypic plasticity.
4. Some genotypes displayed fitness improvement on novel host plants.
5. Differences in genotypic correlation among fitness components between the two hosts and increased variance on nasturtium indicated different genomic expression on nasturtium.
6. The results indicated that phenotypic plasticity in a novel environment may be a major determinant of the evolutionary trajectory of a parasitic species and might support the idea that speciation starts with phenotypic plasticity.     

Odonates as biological indicators of grazing effects on Canadian prairie wetlands

Abstract.  1. Aquatic macro-invertebrates have frequently been used as biological indicators in lotic environments but much less commonly so in lentic habitats. Dragonflies and damselflies (Order Odonata) satisfy most selection criteria for lentic bioindicators of grazing impacts.
2. Intensive cattle grazing affects most of the Canadian prairie pothole region but the effects of grazing on wetlands are poorly understood.
3. Here the vegetation structure and invertebrate community composition of 27 prairie potholes in Alberta, Canada were studied and compared. Wetlands were evenly divided into three treatments of different grazing regimes.
4. Removal of emergent vegetation by cattle grazing decreased odonate abundance and reproductive effort. Shorter Scirpus acutus stems resulted in significantly fewer damselflies (Suborder Zygoptera) and lower reproductive efforts.
5. Overall odonate diversity was affected by the height of key plant species, highlighting the importance of the vegetation structure of both emergent vegetation for breeding and adjacent upland vegetation for nocturnal roosts. Wetland vegetation structure was more important than vegetation composition to the life history of odonates.
6. Wetland water quality parameters of nitrogen, phosphorus, total dissolved solids (TDS), and chlorophyll-a concentration did not change due to the presence of grazing cattle at wetlands so water quality influences were rejected as mechanisms of change.
7. Larval odonate diversity and abundance was positively correlated with overall aquatic macro-invertebrate diversity and abundance, hence it was concluded that the larval odonate community can be an accurate bioindicator of intactness and diversity of overall aquatic macro-invertebrate communities in Canadian prairie wetlands.     

Characterization of vanA-type Enterococcus faecium isolates from urban and hospital wastewater and pigs

Aims:  In this study we analysed urban, hospital wastewater and pig faeces samples to investigate the presence of vancomycin-resistant Enterococcus faecium strains (VREF) and to determine potential links among the strains originating from the above sources and VREF strains causing clinical infections.
Methods and Results:  Urban, hospital wastewater and pig faeces exhibited high VREF prevalence of 52%, 87% and 85%, respectively. Pulsed field gel electrophoresis (PFGE) clustering of VREF genotypes as well as discriminant analysis of antibiotic resistance patterns of VREF strains revealed their source specificity while strains isolated from hospitalized humans were genetically distinct.
Conclusions:  PFGE genotypes and antimicrobial resistance patterns in VREF isolates are distinguishable by each sample origin. The observed high genetic diversity of VREF suggests horizontal transfer of genetic elements among VREF. Phenotypic and genotypic data indicate that VREF isolates of hospital-treated wastewater might pass to the urban wastewater system.
Significance and Impact of the Study:  This study provides information to understand the origin and the mechanism of circulation of vancomycin resistance in food animals and wastewater treatment plants for minimizing the risk of transmission of VRE in human population.     

Inter-sexual combat and resource allocation into body parts in the spider, Stegodyphus lineatus

Abstract.  1. Sexual conflict, which results from the divergence of genetic interests between males and females, is predicted to affect multiple behavioural, physiological, and morphological traits.
2. Sexual conflict over mating may interact with population density to produce predictable changes in resource allocation into inter-sexual armament.
3. In the spider Stegodyphus lineatus , males fight with females over re-mating. The outcome of the fight is influenced by the cephalothorax size of the contestants. The investment in armament – the cephalothorax, may be traded-off against investment in abdomen, which is a trait that affects survival and fecundity. Pay-offs may depend on population density. Both sexes are expected to adjust resource allocation into different body parts accordingly.
4. Males had increased cephalothorax/body size ratio in low densities where probability of finding another receptive female is low and females had increased cephalothorax/body size ratio in high densities where cumulative costs of multiple mating are high.
5. The results support the theoretical conjecture that population density affects resource allocation into inter-sexual armament and call for further research on the interaction between sexual selection and population density.     

Genetic variation in Pueraria lobata (Fabaceae), an introduced, clonal, invasive plant of the southeastern United States

Pueraria lobata (kudzu), a clonal, leguminous vine, is invading the southeastern United States at a rate of 50 000 ha per year. Genetic variability and clonal diversity were measured in 20 southeastern U.S. populations using 14 allozyme loci. Within its U.S. range, 92.9% of the loci were polymorphic and overall genetic diversity was 0.290. Such high levels of genetic diversity are consistent with its history of multiple introductions over an extended period of time. The average proportions of polymorphic loci and genetic diversity within populations were 55.7% (range = 28.6–85.7%) and 0.213 (range = 0.114–0.317), respectively. The proportion of total genetic diversity found among populations was similar to species with equivalent life history characters (G_ST = 0.199). No regional patterns of variation were seen. The number of putative genotypes in each population ranged from 2 to 26. Mean genotypic diversity was 0.694, ranging from 0.223 to 0.955. Such high levels of genotypic diversity indicate that local sites are often colonized by several propagules (most likely seeds) and/or that sexual reproduction occurs within populations after establishment. An excess of heterozygosity was observed in populations with few unique genets, implying that selection for highly heterozygous individuals may occur in populations of P. lobata.     

Genetic diversity of Daphnia magna populations enhances resistance to parasites

The diversity-disease hypothesis states that decreased genetic diversity in host populations increases the incidence of diseases caused by pathogens (= monoculture effect) and eventually influences ecosystem functioning. The monoculture effect is well-known from crop studies and may be partially specific to the artificial situation in agriculture. The effect received little attention in animal populations of different diversities. Compared with plants, animals are mobile and exhibiting social interactions. We followed the spread of a microsporidian parasite in semi-natural outdoor Daphnia magna populations of low and high genetic diversity. We used randomly selected, naturally occurring host genotypes. Host populations of low diversity were initially monoclonal, while the host populations of high diversity started with 10 genotypes per replicate. We found that the parasite spread significantly better in host populations of low diversity compared with host populations of high diversity, independent of parasite diversity. The difference was visible over a 3-year period. Host genotypic diversity did not affect host population density. Our experiment demonstrated a monoculture effect in independently replicated semi-natural zooplankton populations, indicating that the monoculture effect may be relevant beyond agriculture.     

Seasonal patterns of viruses, bacteria and dissolved organic carbon in a riverine wetland

SUMMARY 1. Viral and bacterial abundances were studied in relation to environmental attributes over an annual period, for both planktonic and attached (sediment, aquatic macrophyte and submerged wood) habitats, in a riverine wetland.
2. Annual mean abundance of planktonic viruses ranged from 2.3 × 10⁵−3.8 × 10⁵ particles mL⁻¹ and varied according to sampling site. Significant seasonal patterns in viral abundance were evident and appeared to be linked to variations in bacterial abundance, dissolved organic carbon and inorganic nutrients.
3. Annual mean abundance of viruses associated with surfaces ranged from 1.3 × 10⁶ particles cm⁻² on aquatic macrophytes to 1.1 × 10⁷ particles cm⁻² on wood and also showed seasonal patterns. The difference in viral dynamics among the different sites emphasizes the importance of considering habitat diversity within wetlands when examining microbial communities.     

Genotypic diversity enhances invasive ability of Spartina alterniflora

Although genetic diversity is very important for alien species, which have to cope with new environments, little is known about the role that genetic diversity plays in their invasive success. In this study, we set up a manipulation experiment including three levels of genotypic diversity to test whether genotypic diversity can enhance the invasive ability of alien species, in our case the invasive Spartina alterniflora in China, and to infer the underlying mechanisms. There was no significant relationship between genotypic diversity and parameters of performance in the first year; however, from the summer of the second year onwards, genotypic diversity enhanced four of the six parameters of performance. After two growing seasons, there were significant positive relationships between genotypic diversity and maximum spread distance, patch size, shoot number per patch, and aboveground biomass. Moreover, abundance of the native dominant species Scirpus mariqueter was marginally significantly decreased with genotypic diversity of S. alterniflora, suggesting that enhanced invasive ability of S. alterniflora may have depressed the growth of the native species. There was no significant difference in most measures of performance among six genotypes, but we observed a transgressive over performance in four measures in multiple‐genotype patches. At the end of the experiment, there were significant nonadditive effects of genotypic diversity according to Monte Carlo permutations, in six‐genotype, but not three‐genotype plots. Our results indicated that both additive and nonadditive effects played roles in the positive relationship between genetic diversity and invasion success, and nonadditive effects were stronger as duration increased.     

Insect herbivory and plant adaptation in an early successional community*

To address the role of insect herbivores in adaptation of plant populations and the persistence of selection through succession, we manipulated herbivory in a long‐term field experiment. We suppressed insects in half of 16 plots over nine years and examined the genotypic structure and chemical defense of common dandelion (Taraxacum officinale), a naturally colonizing perennial apomictic plant. Insect suppression doubled dandelion abundance in the first few years, but had negligible effects thereafter. Using microsatellite DNA markers, we genotyped >2500 plants and demonstrate that insect suppression altered the genotypic composition of plots in both sampling years. Phenotypic and genotypic estimates of defensive terpenes and phenolics from the field plots allowed us to infer phenotypic plasticity and the response of dandelion populations to insect‐mediated natural selection. The effects of insect suppression on plant chemistry were, indeed, driven both by plasticity and plant genotypic identity. In particular, di‐phenolic inositol esters were more abundant in plots exposed to herbivory (due to the genotypic composition of the plots) and were also induced in response to herbivory. This field experiment thus demonstrates evolutionary sorting of plant genotypes in response to insect herbivores that was in same direction as the plastic defensive response within genotypes.     

羊草基因型多样性能增强种群对干扰的响应

研究了不同基因型多样性(1、3、6三种基因型组合)羊草种群的地上生物量、地下生物量、分蘖数、根茎芽数和根冠比5个指标对干扰强度(用不同留茬高度来模拟)的响应。结果表明:(1)基因型多样性和干扰强度对地上生物量、地下生物量、分蘖数和根茎芽数均有显著影响(P0.05),但两者的交互作用不显著(P0.05)。其中,多基因型组合(3、6基因型组合)羊草种群中这4个响应变量的值均显著高于单基因型羊草种群(P0.05);而干扰强度的增加显著降低了这4个响应变量的值(P0.05)。对于根冠比这一响应变量来说,仅干扰强度对其产生了显著地影响(P0.05)。(2)29个基因型多样性效应值中,有25个值大于0,其中12个表现为显著的基因型多样性正效应。依Loreau和Hector的方法将多样性净效应分解后发现,互补效应和选择效应共同主导12个响应指标的基因型多样性效应,而互补效应独自主导3个、选择效应独自主导5个响应指标的基因多样性效应;但对基因型多样性正效应起主要贡献的是互补效应。所得结果表明,基因型多样性能提高羊草种群的表现,能增强羊草种群对干扰的响应,不同基因型间的互补作用对这种正效应起主要贡献,这将为该物种种质资源保护和合理利用提供理论指导。     

Aphid and ladybird beetle abundance depend on the interaction of spatial effects and genotypic diversity

Intraspecific variation and genotypic diversity of host-plants can affect the structure of associated arthropod communities and the dynamics of populations. Similarly, neighboring plants can also affect interactions between host-plants and their associated arthropods. However, most studies on the effects of host-plant genotypes have largely ignored the potential effects of neighboring host-plants on arthropod communities. In this study, we used a common garden experiment to ask how spatial effects of neighboring patches, along with genotype identity and genotypic diversity in tall goldenrod (Solidago altissima), affect the abundances of a common goldenrod herbivore (Uroleucon nigrotuberculatum) and their dominant predator (Harmonia axyridis, a ladybird beetle). Aphid abundance varied 80-fold among genotypes, while ladybird beetle abundance was not affected by genotype identity. Additionally, there were strong effects of neighboring plots: aphid abundance in a focal plot was positively correlated to aphid abundance in nearby plots, suggesting strong spatial patterning in the abundance of aphids. Neither aphid nor ladybird beetle abundance was affected by genotypic diversity. However, focal plot genotypic diversity mediated the strength of the neighborhood effect (i.e., strong effects for genotype polyculture focal plots and weak effects for genotype monoculture focal plots). Our results show that aphids were directly influenced by host-plant genotype identity while ladybird beetles responded mainly to prey abundance, and suggest that genotypic diversity can influence the effects of spatial processes on the plant-herbivore interactions.     

Genotypic diversity effects on the performance of Taraxacum officinale populations increase with time and environmental favorability

Within-population genetic diversity influences many ecological processes, but few studies have examined how environmental conditions may impact these short-term diversity effects. Over four growing seasons, we followed experimental populations of a clonal, ubiquitous weed, Taraxacum officinale, with different numbers of genotypes in relatively favorable fallow field and unfavorable mowed lawn environmental treatments. Population performance (measured as total leaf area, seed production or biomass) clearly and consistently increased with diversity, and this effect became stronger over the course of the experiment. Diversity effects were stronger, and with different underlying mechanisms, in the fallow field versus the mowed lawn. Large genotypes dominated in the fallow field driving overyielding (via positive selection effects), whereas in the mowed lawn, where performance was limited by regular disturbance, there was evidence for complementarity among genotypes (with one compact genotype in particular performing better in mixture than monoculture). Hence, we predict stronger genotypic diversity effects in environments where intense intraspecific competition enhances genotypic differences. Our four-year field experiment plus seedling establishment trials indicate that genotypic diversity effects have far-reaching and context-dependent consequences across generations.     

Intra-specific responses of a dominant C4 grass to altered precipitation patterns

The mechanisms by which global change alters the genotypic structure of populations by selection remain unclear. Key to this understanding is elucidating genotype–phenotype relationships under different environmental conditions as genotypes could differ in their plasticity or in their tolerance to changing environmental conditions. We have previously observed selection of certain genotypes of the dominant C₄ grass Andropogon gerardii L. within the on-going Rainfall Manipulation Plots (RaMPs) experiment at Konza Prairie Biological Station in Kansas. The RaMPs experiment has been experimentally imposing ambient and more variable (altered) precipitation patterns since 1998. Here, we studied phenotypic differences among six genotypes to gain insight into what drove the pattern of selection previously observed and assess potential genotype × environmental interactions. In 2008 and 2009 we sampled individuals of genotypes in the RaMPs and within unmanipulated reference plots located adjacent to the RaMPs experiment. For each individual, we measured both leaf-level (specific leaf area, stomatal conductance) and whole-plant growth (height, biomass) traits. We consistently detected differences among genotypes in the reference plots. Additionally, when focusing on two genotypes found in the altered and ambient RaMPs we observed no genotype × environment interactions. Overall, we found in an intact population of A. gerardii there exists phenotypic variability among genotypes, but no genotype × environment interactions. Thus our results demonstrate that differences in plasticity of genotypes do no explain the pattern of selection we observed.     

Ants and plant size shape the structure of the arthropod community of Hirtella myrmecophila, an Amazonian ant-plant

Abstract.  1. To investigate the influence of plant size and the presence of resident ants on the arthropod community associated with the ant-plant Hirtella myrmecophila , ants ( Allomerus octoarticulatus ) were experimentally removed from plants of various sizes, with a second group of similar-sized plants remaining as controls. The abundance and diversity of arthropods on these plants were determined at 45-day intervals for 7 months. Collected arthropods were assigned into one of three predetermined groups: herbivores, spiders (mostly web-building spiders), or 'tourists' (mostly non-resident ants, hemipterans, dipterans, or scarabeid beetles).
2. Ant removal had a positive influence on the abundance and diversity of herbivores, but no measurable effects on the abundance and diversity of 'tourists', while the effect on spider abundance was significant only when data from Dipoena sp. nov. were removed from the analysis. While A. octoarticulatus had a negative effect on most spiders, it favoured Dipoena sp. nov., which was found to be a specialist predator of A. octoarticulatus .
3. Plant size positively affected the abundance and diversity of 'tourists' in plants with and without ants, but for herbivores and spiders this effect was dependent on ant treatment. In ant-maintained plants the per-plant abundance of herbivores and spiders was independent of plant size, whereas in ant-removed plants it was not.
4. These results suggest that A. octoarticulatus affects all arthropods found on its host plant, except those presenting an occasional and temporary association with the plant, and that the magnitude of ant effects on the susceptible guilds increases as plant size increases.