Using Self-Organizing Maps to Explore Patterns in Species Richness and Protection

The combination of species distributions with abiotic and landscape variables using Geographic Information Systems can prioritize areas for biodiversity protection by identifying areas of high richness, although the number of variables and complexity of the relationships between them can prove difficult for traditional statistical methods. The use of these methods, which commonly assume linearity and low correlation between independent variables, can obscure even strong relationships and patterns. Self-Organizing Maps (SOM) is a heuristic statistical tool based on machine learning methods that can be used to explore patterns in large, complex datasets for linear and nonlinear patterns. Here we use SOM to visualize broad patterns in species richness by taxonomic group (birds, mammals, reptiles, and amphibians) and 78 habitat, landscape and environmental variables using data from the Gap analysis project for West Virginia, USA. Soil and habitat variables demonstrated clear relationships with species richness; areas with high species richness occurred in areas with high soil richness. Landscape metrics were less important, although habitat diversity and evenness indices were positively related to species richness in some taxonomic groups. Current coverage of protected areas (e.g., National Forests and state parks) appeared to be insufficient to cover most of the areas of high species richness, especially for reptiles; many of the polygons with the highest richness were not covered by these areas. The identification of polygons with high richness and low protection can be used to focus conservation efforts in those areas.     

Behavioural context of multi-scale species distribution models assessed by radio-tracking

Incorporating ecological processes and animal behaviour into Species Distribution Models (SDMs) is difficult. In species with a central resting or breeding place, there can be conflict between the environmental requirements of the ‘central place’ and foraging habitat. We apply a multi-scale SDM to examine habitat trade-offs between the central place, roost sites, and foraging habitat in Myotis nattereri. We validate these derived associations using habitat selection from behavioural observations of radio-tracked bats. A Generalised Linear Model (GLM) of roost occurrence using land cover variables with mixed spatial scales indicated roost occurrence was positively associated with woodland on a fine scale and pasture on a broad scale. Habitat selection of radio-tracked bats mirrored the SDM with bats selecting for woodland in the immediate vicinity of individual roosts but avoiding this habitat in foraging areas, whilst pasture was significantly positively selected for in foraging areas. Using habitat selection derived from radio-tracking enables a multi-scale SDM to be interpreted in a behavioural context. We suggest that the multi-scale SDM of M. nattereri describes a trade-off between the central place and foraging habitat. Multi-scale methods provide a greater understanding of the ecological processes which determine where species occur and allow integration of behavioural processes into SDMs. The findings have implications when assessing the resource use of a species at a single point in time. Doing so could lead to misinterpretation of habitat requirements as these can change within a short time period depending on specific behaviour, particularly if detectability changes depending on behaviour.     

Climatic determinants of diet and foraging behaviour in baboons

Baboons (Papio spp.) are characterised by a large degree of variation in foraging behaviour and dietary composition. Previous analyses have suggested that much of this can be traced to differences in ecological conditions between sites. The proximate mechanism underlying these relationships is assumed to be mediated via the impact of climatic conditions on food availability, and ultimately the impact that this has on dietary composition. This paper examines these relationships more explicitly. Data from 15 baboon populations were used to assess the relationship between foraging variables and dietary composition. Only feeding time showed significant relationships with dietary composition, with percentage of time spent feeding decreasing with proportion of fruit in the diet, and increasing with the proportion of subterranean items. No relationships were found between diet composition and moving time or day journey length, although significant relationships were found between these variables and group size. The proportions of feeding time spent feeding on fruit, subterranean items and leaves were functions of the ecological conditions experienced by that population, although no relationships were found for the percentage of feeding time devoted to flowers or animal material. The relationships between the proportion feeding time spent on fruits, leaves and subterranean items and ecological variables could be best explained through understanding the way in which bush and tree level vegetation respond to the climatic environment and the impact this has on fruit availability. In this respect, temperature and seasonality are the key climatic parameters. This provides good support for the idea that the proximate mechanism underlying the relationship between foraging time and ecological variables is mediated via the impact of the climatic environment on vegetation structure and food availability. Similar factors have been proposed to explain much of the geographic variation in species diversity, suggesting that these relationships have far wider relevance and may account for much of the observed geographical variation in mammalian behaviour.     

Stream macroinvertebrate response to catchment urbanisation (Georgia, U.S.A.)

SUMMARY 1. The effects of catchment urbanisation on water quality were examined for 30 streams (stratified into 15, 50 and 100 km² ± 25% catchments) in the Etowah River basin, Georgia, U.S.A. We examined relationships between land cover (implying cover and use) in these catchments (e.g. urban, forest and agriculture) and macroinvertebrate assemblage attributes using several previously published indices to summarise macroinvertebrate response. Based on a priori predictions as to mechanisms of biotic impairment under changing land cover, additional measurements were made to assess geomorphology, hydrology and chemistry in each stream. 2. We found strong relationships between catchment land cover and stream biota. Taxon richness and other biotic indices that reflected good water quality were negatively related to urban land cover and positively related to forest land cover. Urban land cover alone explained 29–38% of the variation in some macroinvertebrate indices. Reduced water quality was detectable at c. >15% urban land cover. 3. Urban land cover correlated with a number of geomorphic variables such as stream bed sediment size (–) and total suspended solids (+) as well as a number of water chemistry variables including nitrogen and phosphorus concentrations (+), specific conductance (+) and turbidity (+). Biotic indices were better predicted by these reach scale variables than single, catchment scale land cover variables. Multiple regression models explained 69% of variation in total taxon richness and 78% of the variation in the Invertebrate Community Index (ICI) using phi variability, specific conductance and depth, and riffle phi, specific conductance and phi variability, respectively. 4. Indirect ordination analysis was used to describe assemblage and functional group changes among sites and corroborate which environmental variables were most important in driving differences in macroinvertebrate assemblages. The first axis in a non‐metric multidimensional scaling ordination was highly related to environmental variables (slope, specific conductance, phi variability; adj. R²=0.83) that were also important in our multiple regression models. 5. Catchment urbanisation resulted in less diverse and more tolerant stream macroinvertebrate assemblages via increased sediment transport, reduced stream bed sediment size and increased solutes. The biotic indices that were most sensitive to environmental variation were taxon richness, EPT richness and the ICI. Our results were largely consistent over the range in basin size we tested.     

The role of setts in badger (Meles meles) group size, breeding success and status of TB (Mycobacterium bovis)

This paper examines the relationship between the number of occupied setts in a badger social group territory and badger group size, breeding success, and status of infection with Mycobacterium bovis (TB). The data used were from a long-term epidemiological and ecological study of a high-density population of badgers Meles meles in south-west England. The number of occupied setts in a social group was significantly and positively related to the number of badgers caught in the social group, so that as a social group increases in size, badgers occupy more of the available setts. This relationship remained significant when numbers of adults, adult males and adult females were examined. The number of breeding females, number of cubs and sex ratio was not related to the number of occupied setts in a social group. It is possible that the advantages to breeding females of a larger number of setts available to breed in might be outweighed by the increased aggression found in larger groups. The TB score for prevalence and for incidence of social groups was significantly and positively related to the number of occupied setts in a social group, such that the more occupied setts there were in a territory, the higher the TB index of the group. Possibly the setts themselves contribute to the persistence of TB within social groups, or badgers infected with TB might show a difference in behaviour from uninfected badgers resulting in their increased use of outlying setts.     

Size and reproduction of Thelypteris limbosperma and Athyrium distentifolium along environmental gradients in Western Norway

The performance of the ferns Thelypteris limbospgrma and Athyrium distentifolium , as expressed by number of son on pinnules and frond size, has been related to environmental gradients. Data have been collected from homogenous fern-dominated stands from different geographical areas in Western Norway. Number of sori produced, which was assumed to indicate fern fertility, was highly variable. There were significant correlations between frond size and fertility, but only 35–46 % of the variation in fertility could be explained by differences in frond size. The highest number of sori was found on plants of medium size, and for A. distentifolium there was a statistically significant reduction in sori number on fronds taller than 125 cm. For the linear relationships between fertility and size, it is suggested that the small X-intercept and slope defines the high competitive ability of A. distentifolium in sites with a long-lasting snow cover. The ferns may dominate in large stands even though their fertility is low or zero, which indicates that they under certain ecological conditions mainly reproduce vegetatively. Both ferns show decreased fertility both toward their altitudinal and lowland distribution limits, but their fertility optima were different. The performances of the two fern species showed highly different responses to geographical and climatical variables. The fertility of T. limbosperma could be predicted by mean July- and January temperatures, humidity and canopy cover, while the fertility of A. distentifolium could not be predicted by any of the site environmental variables investigated.     

Snowshoe hares display limited phenotypic plasticity to mismatch in seasonal camouflage

As duration of snow cover decreases owing to climate change, species undergoing seasonal colour moults can become colour mismatched with their background. The immediate adaptive solution to this mismatch is phenotypic plasticity, either in phenology of seasonal colour moults or in behaviours that reduce mismatch or its consequences. We observed nearly 200 snowshoe hares across a wide range of snow conditions and two study sites in Montana, USA, and found minimal plasticity in response to mismatch between coat colour and background. We found that moult phenology varied between study sites, likely due to differences in photoperiod and climate, but was largely fixed within study sites with only minimal plasticity to snow conditions during the spring white-to-brown moult. We also found no evidence that hares modify their behaviour in response to colour mismatch. Hiding and fleeing behaviours and resting spot preference of hares were more affected by variables related to season, site and concealment by vegetation, than by colour mismatch. We conclude that plasticity in moult phenology and behaviours in snowshoe hares is insufficient for adaptation to camouflage mismatch, suggesting that any future adaptation to climate change will require natural selection on moult phenology or behaviour.     

Landscape Patterns of Tropical Forest Recovery in the Republic of Palau1

A GIS (geographic information systems) database was constructed from aerial photographs, a vegetation map, and topographic map data of the Ngeremeduu Bay Drainage Area (NBDA), Palau, to examine relationships between upland land cover dynamics, environmental variables, and past land use. In 1992, 82.9 percent of the NBDA was forest, 16.6 percent was grassland, and 0.5 percent consisted of village areas. Between 1947 and 1992, there was a 11.2 percent reduction of grassland area primarily due to a 10.9 percent increase in forest cover. These land cover changes led to larger, more continuous stretches of forest and numerous, highly fragmented grassland patches. Significant relationships (P 0.001) were found between the spatial distribution of forest and grassland cover and slope, elevation, soil pH, and percent soil organic matter. These patterns, however, may have resulted from past farm site selection rather than from ecological relationships. Our results indicate that areas of forest expansion were significantly (P 0.001) associated with the location of abandoned agricultural communities. In addition, over 92 percent of areas of forest expansion occurred within 100 m of established forest. These results suggest that the proximity of established forest facilitate forest recovery following human disturbance.     

Sexual differences in microhabitat selection of breeding little bustards Tetrax tetrax: Ecological segregation based on vegetation structure

We examined sexual differences in patterns of vegetation structure selection in the sexually dimorphic little bustard. Differences in vegetation structure between male, female and non-used locations during reproduction were examined and used to build a presence/absence model for each sex. Ten variables were measured in each location, extracting two PCA factors (PC1: a visibility-shelter gradient; PC2: a gradient in food availability) used as response variables in GLM explanatory models. Both factors significantly differed between female, male and control locations. Neither study site nor phenology was significant. Logistic regression was used to model male and female presence/absence. Female presence was positively associated to cover of ground by vegetation litter, as well as overall vegetation cover, and negatively to vegetation density over 30 cm above ground. Male presence was positively related to litter cover and short vegetation and negatively to vegetation density over 30 cm above ground. Models showed good global performance and robustness. Female microhabitat selection and distribution seems to be related to the balance between shelter and visibility for surveillance. Male microhabitat selection would be related mainly to the need of conspicuousness for courtship. Accessibility to food resources seems to be equally important for both sexes. Differences suggest ecological sexual segregation resulting from different ecological constraints. These are the first detailed results on vegetation structure selection in both male and female little bustards, and are useful in designing management measures addressing vegetation structure irrespective of landscape composition. Similar microhabitat approaches can be applied to manage the habitat of many declining farmland birds.     

Mapping the complexity of ecological models

We propose to define the complexity of an ecological model as the statistical complexity of the output it produces. This allows for a direct comparison between data and model complexity. Working with univariate time series, we show that this measure ‘blindly’ discriminates among the different dynamical behaviours a model can exhibit. We then search a model parameter space in order to segment it into areas of different dynamical behaviour and calculate the maximum complexity a model can generate. Given a time series, and the problem of choosing among a number of ecological models to study it, we suggest that models whose maximum complexity is lower than the time series complexity should be disregarded because they are unable to reconstruct some of the structures contained in the data. Similar reasoning could be used to disregard models’ subdomains as well as areas of unnecessary high complexity. We suggest that model complexity so defined better captures the difficulty faced by a user in managing and understanding the behaviour of an ecological model than measures based on a model ‘size’.     

Traits,neighbors, and species performance in prairie restoration

Questions: Are traits related to the performance of plant species in restoration? Are the relationships between traits and performance consistent across the functional groups of annual forbs, perennial forbs and grasses? Do the relationships between traits and performance depend on neighboring functional groups? Location: A former agricultural field, being restored to native upland prairie, in the Willamette Valley of western Oregon, USA. Methods: Twenty‐eight native species, representing three functional groups, were sown in seven different combinations. Eleven functional traits were measured from plants in the laboratory and in the field. Correlations between individual traits and performance variables were measured and regression techniques used to determine which sets of traits were most strongly related to performance. Results: Sets of traits explained up to 56% of variation in cover, and up to 48% of variation in establishment frequency. The relationships between traits and performance were influenced by functional group identity; the functional group identity of neighboring species also influenced species' cover and the relationships between traits and cover. Species' establishment rate in monoculture was the trait most strongly correlated to both establishment and cover in mixtures. In multi‐trait models, annual forb functional group identity was strongly related to establishment in mixtures, and height, leaf weight ratio at 7 d and seed mass were strongly related to cover. Conclusions: Multiple‐trait models should be a useful way of predicting the performance of species prior to sowing in restoration. The functional group identity of each species and the other species being sown may need to be taken into account when making predictions.     

Factors influencing red deer occurrence at the southern edge of their range: A Mediterranean ecosystem

The red deer is in the Iberian Peninsula at the southwestern edge of its European range and although widespread, red deer ecology in Portugal remains poorly understood. By using pellet group counts, we investigate how habitat structure, vegetation composition and human disturbance affect red deer occurrence. Red deer distribution was positively associated with areas with high density of heather, Leguminosae plants and patches with high cover of shrubs, ground cover and tree cover. Red deer occupied areas further away from roads and from villages. Red deer distribution was negatively associated with agricultural fields and areas with high canopy cover.In the perspective of the current climatic changes, continue research on red deer in these so-called edge populations represents an opportunity to assess the ecological responses within an evolutionary perspective and to provide important conservation suggestions for other countries located on the edge of its distribution range. The present results have implications for the conservation of red deer, emphasizing the need for wide range ecological studies. Red deer variation seems to be related to local factors rather than proximity to the edge of its range.     

Ecological Predictors of Range Areas and Use of Burrow Systems in the Diurnal Rodent, Octodon degus

Variation in animal space use patterns may be linked to numerous ecological factors affecting survival and reproduction. We examined the relationship between ecology and above‐ and below‐ground components of space use by Octodon degus, a semi‐fossorial rodent in Chile. We monitored the daytime minimum convex polygon and adaptive kernel range areas of 26 individuals and determined the number of burrow systems used by degus during night‐time radiotelemetry and trapping of burrow systems on two study grids at Rinconada de Maipú, a semi‐arid Matorral in central Chile. We quantified food biomass, soil hardness, distance to overhead vegetative cover, and density of burrow openings at putative nest burrows. Degus living on the grid with more shrub cover had larger range areas than degus living on the grid with less cover. The range areas of degus decreased with increasing distance from overhead vegetative cover. There was a weak (but statistically significant) negative relationship between the number of burrow systems used by degus and the distance to vegetative cover and density of burrow openings at burrow systems. Male and female degus had similar range areas. Our results suggest that overhead cover decreases the risk of predation to male and female degus. Degus probably balance the benefits of numerous burrow openings (reduced predation risk) with time and energy requirements of burrow construction and maintenance. Models of space use that consider the effect of multiple ecological variables should measure different dimensions of space use.     

Effects on bird abundance and species richness of edge restructuring to include shrubs at the interface between conifer plantations and moorland

Capsule?Bird species richness and (for most species) abundance were positively related to the extent of shrub cover at the interface between conifer plantations and moorland, but it appears that responses to shrub development vary between different bird guilds.

Aims?To assess the bird assemblages in both winter and breeding seasons at the interface between managed conifer plantations and open moorland, where that interface had been restructured to include a mosaic of shrubs and open ground.

Methods?Timed point counts were used to sample the birds at restructured plantation – moorland interface areas and also in neighbouring plantations (post- and pre-thicket age classes) and neighbouring moorland. Associations between species richness and abundances with measures of shrub cover and composition were assessed using GLMMs.

Results?A total of 60 bird species were recorded including 29 on lists of conservation concern, most of which were associated with shrub interface habitats. Species richness and, for most species, abundance were positively related to the extent of shrub cover. Positive relationships between shrub cover in interface areas and the abundance of some species in neighbouring plantations and open moorland suggested a resource subsidy to birds in neighbouring habitats. In contrast, some birds tended to be less abundant in plantations next to areas with more shrub cover. These species were more abundant in the shrub itself, suggesting redistribution by species with a preference for early successional shrub habitats.

Conclusions?The long-term management of shrub, especially with regard to successional development, is a challenging aspect of forest and landscape management that deserves further study.     

The disruption of dominance hierarchies by a non-native species: an individual-based analysis

We studied the effects of the exotic rainbow trout (Oncorhynchus mykiss) on the performance and the dominance hierarchy of native Atlantic salmon (Salmo salar) at the group and individual level using laboratory and semi-natural experiments. At the group level, we compared the effects of interspecific and intraspecific competition (substitutive and additive design) on behavioural responses and growth of young-of-the-year Atlantic salmon. At the individual level, the same design was used to evaluate: (1) the temporal consistency of behavioural responses, dominance hierarchy and growth rate of Atlantic salmon; (2) the pattern of correlations between behaviours; and (3) the relationship between individual growth rate and behaviour. In the laboratory, group-level analyses revealed a weak but similar effect of rainbow trout and intraspecific competition on the behaviour and growth of Atlantic salmon. In contrast, individual-based analyses demonstrated that rainbow trout (but not intraspecific competition) strongly affected behavioural strategy, dominance hierarchy and growth trajectory of individual Atlantic salmon. Specifically, behaviours, dominance status and growth rate of salmon were temporally consistent in the intraspecific environment, while these patterns were disrupted when rainbow trout were present. Similarly, we found that rainbow trout strongly affected behavioural correlations and the relationships between individual growth rate and behaviour. The semi-natural experiments confirmed these results as interspecific competition affected relationships between individual growth rate of salmon, initial weight and activity index. Overall, individual-based analyses highlighted important mechanisms that were concealed at the group level, and that may be crucial to understand ecological and evolutionary consequences of exotic species. Moreover, these results demonstrated that competition with an exotic species disrupts the hierarchical relationship among native individuals and may therefore represent a potential for a shift in selective pressure.     

The Significance of Ecological Factors for Exploration and Neophobia in Parrots

Exploratory behaviour plays an important role in most animals for gathering information about their environment. If it constitutes an adaptation to different environmental conditions exploratory behaviour should differ between species. This has been tested with several hypotheses.
Sixty-one parrot species (Psittacidae) from eight tribes with different diets and habitat preferences were investigated in aviaries. Two tests were carried out. First, a novel object (wooden ring) in the familiar aviary was presented on two test days in the exploration test. Latencies until first contact with the object and the duration of exploration were recorded. Secondly, in the neophobia test, novel objects were placed beside the feeding dish and latencies until first food intake were recorded.
The exploration and neophobia data were related to 12 (13) ecological variables using multiple regression analyses. Phylogenetic relationships were considered.
Species that inhabit complex habitats, such as forest edges, or that feed on buds or species from islands showed the shortest latencies in the exploration test. In contrast, long latencies were related to a diet including a great amount of seeds and/or flowers. The longest duration of exploration occurred in species eating nuts or originating from islands, whereas short durations were related to feeding on seeds. Neophobia was positively related to a diet consisting of insects, and negatively to a diet of leaves. There was no relationship between measures of exploration and neophobia. Exploration and neophobia seem to be tightly related to the ecology of a species.     

The covariance between metabolic rate and behaviour varies across behaviours and thermal types: meta‐analytic insights

Energy metabolism has received much attention as a potential driver of repeatable among‐individual differences in behaviour (animal personality). Several factors have been hypothesized to mediate this relationship. We performed a systematic review with a meta‐analysis of >70 studies comprised of >8000 individuals reporting relationships between measures of maintenance metabolic rates (i.e. basal metabolic rate, resting metabolic rate, and standard metabolic rate) and behaviour. We evaluated support for three hypothesized mediators: (i) type of behaviour, (ii) opportunities for energy re‐allocation, and (iii) magnitude of energetic constraints. Relationships between measures of maintenance metabolic rate (MR) and behaviour are predicted to be strongest for behaviours with strong consequences for energy turnover (acquisition or expenditure). Consistent with this, we found that behaviours with known consequences for energy gain (e.g. foraging, dominance, boldness) or expenditure (e.g. maximum sprint speed, sustained running speed, maximum distance travelled, etc.) had strong positive correlations with MR, while behaviours with putatively weak and/or inconsistent associations with net energy gain or loss (e.g. exploration, activity, sociability) were not correlated with MR. Greater opportunities for energy reallocation are predicted to weaken relationships between MR and behaviour by creating alternative pathways to balance energy budgets. We tested this by contrasting relationships between MR and behaviour in ectotherms versus endotherms, as thermoregulation in endotherms creates additional opportunities for energy reallocation compared with ectotherms. As predicted, the relationship between behaviour and MR was stronger in ectotherms compared with endotherms. However, statistical analyses of heterogeneity among effect sizes from different species did not support energy re‐allocation as the main driver of these differences. Finally, we tested whether conditions where animals face greater constraints in meeting their energy budgets (e.g. field versus laboratory, breeding versus non‐breeding) increased the strength of the relationship between MR and behaviour. We found that the relationship between MR and behaviour was unaffected by either of these modifiers. This meta‐analysis provides two key insights. First, we observed positive relationships of similar magnitude between MR and behaviours that bring in net energy, and behaviours that cost net energy. This result is only consistent with a performance energy‐management model. Given that the studies included in our meta‐analysis represent a wide range of taxa, this suggests that the performance model may be the most common model in general. Second, we found that behaviours with putatively weak or inconsistent consequences for net energy gain or expenditure (exploration, activity, sociability) show no relationship with MR. The lack of relationship between MR and behavioural traits with weak and/or inconsistent consequences for energy turnover provides the first systematic demonstration of the central importance of the ecological function of traits in mediating relationships between MR and behaviour.     

Habitat stability and predation pressure affect temperament behaviours in populations of three-spined sticklebacks

1. There is growing interest in the causes and consequences of animal temperaments. Temperament behaviours often have heritable components, but ecological variables can also affect them. Numerous variables are likely to differ between habitats, and these may interact to influence temperament behaviours. 2. Temperament behaviours may be correlated within populations (behavioural syndromes), although the underlying causes of such correlations are currently unclear. 3. We analysed three different temperament behaviours and learning ability in three-spined sticklebacks, Gasterosteus aculeatus, to determine how different ecological variables influence them both within and between populations. We selected populations from four ponds and four rivers that varied naturally in their exposure to predators. 4. High-predation river populations were significantly less bold than a high-predation pond and low-predation river populations, and low-predation pond populations were significantly less bold than a high-predation pond population. Within populations, temperament behaviours were correlated in one high-predation river population only. 5. These results suggest that multiple ecological factors can interact to affect temperament behaviours between populations, and also correlations in those behaviours within populations.     

Validating standardised personality tests under semi‐natural conditions in wild house mice (Mus musculus domesticus)

Personality traits in animals are often measured using standardised behavioural tests for activity, boldness/shyness, sociability, aggression and exploration. These tests are quick and convenient, as well as easy to repeat. As the interest in studying the impact of animal personality on ecological and evolutionary consequences has been growing rapidly, there is increasing focus on cross‐validating measurements taken during these tests with behaviours shown under natural situations. In our experiment, we aimed to study the relationship between standardised measurements for activity, exploration and anxiety‐like behaviour measured in Open Field, Novel Object and Elevated Plus Maze tests with exploration and colonisation in semi‐natural conditions. We carried out a semi‐natural enclosure experiment in parallel with standardised behavioural tests, creating a scenario similar to an invasion or dispersal event. We compared behaviours in standardised tests and in enclosures for animals of two populations of wild house mice (Mus musculus domesticus). Several behavioural variables taken during the standardised tests, such as distance moved and time spent with novel object, were negatively correlated with space‐use in the enclosure while being highly positively correlated among each other. Based on their relationship with space use, we refer to behavioural measurements from standardised tests as activity/exploration. The time spent near the walls in an open field, probably reflecting anxiety, was not correlated to any other variable or the behaviour in the enclosure. In addition, we found differences in activity/exploration behaviour between the two populations in the standardised tests, but not during the colonisation of the novel environment. These results emphasise that researchers have to be careful when trying to extrapolate behaviour shown in standardised laboratory test setups to more natural, ecologically relevant situations. This has to be taken into account in distantly related species but even when studying the wild relative of laboratory rodents, for which these standardised tests have originally been developed.     

Relationships of overstory to understory cover variables in a Ponderosa pine/Gambel oak ecosystem

Many studies have indicated relationships between individual species, but none have related combinations of overstory variables to understory herbaceous vegetation in a Ponderosa pine/Gambel oak ecosystem. Our objective was to determine not only the general relationships between the two sets of variables, but also identify the hyghest contributing variables. We used canonical correlation analysis to relate overstory variables (canopy cover, basal cover and density) to herbaceous vegetation cover variables. Canopy, basal, and ground cover were measured by the line intercept method using a 12.2 m tape as a sample unit. Tree density was measured by the Point-Center-Quarter method. The analysis was made with selected overstory variables and 5 understory herbaceous cover variables. This analysis revealed a significant canonical correlation between the two canonical variables (r=0.69). The analysis showed that among herbaceous cover variables, Oregon grape, Kentucky bluegrass, sedge, and foxtail barley; and among overstory variables, the density and the basal cover of Ponderosa pine indicated the highest positive contribution to the correlation of the two linear combinations while the density and canopy of Gambel oak negatively affected the canonical correlation.