Seedling–herbivore interactions: insights into plant defence and regeneration patterns

Background

Herbivores have the power to shape plant evolutionary trajectories, influence the structure and function of vegetation, devastate entire crops, or halt the spread of invasive weeds, and as a consequence, research into plant–herbivore interactions is pivotal to our understanding of plant ecology and evolution. However, the causes and consequences of seedling herbivory have received remarkably little attention, despite the fact that plants tend to be most susceptible to herbivory during establishment, and this damage can alter community composition and structure.

Scope

In this Viewpoint article we review why herbivory during early plant ontogeny is important and in so doing introduce an Annals of Botany Special Issue that draws together the latest work on the topic. In a synthesis of the existing literature and a collection of new studies, we examine several linked issues. These include the development and expression of seedling defences and patterns of selection by herbivores, and how seedling selection affects plant establishment and community structure. We then examine how disruption of the seedling–herbivore interaction might affect normal patterns of plant community establishment and discuss how an understanding of patterns of seedling herbivory can aid our attempts to restore semi-natural vegetation. We finish by outlining a number of areas where more research is required. These include a need for a deeper consideration of how endogenous and exogenous factors determine investment in seedling defence, particularly for the very youngest plants, and a better understanding of the phylogenetic and biogeographical patterns of seedling defence. There is also much still be to be done on the mechanisms of seedling selection by herbivores, particularly with respect to the possible involvement of volatile cues. These inter-related issues together inform our understanding of how seedling herbivory affects plant regeneration at a time when anthropogenic change is likely to disrupt this long-established, but all-too-often ignored interaction.     

Plant–microbe interactions and nitrogen dynamics during wetland establishment in a desert stream

In late-successional steady state ecosystems, plants and microbes compete for nutrients and nutrient retention efficiency is expected to decline when inputs exceed biotic demand. In carbon (C)-poor environments typical of early primary succession, nitrogen (N) uptake by C-limited microbes may be limited by inputs of detritus and exudates derived from contemporaneous plant production. If plants are N-limited in these environments, then this differential limitation may lead to positive relationships between N inputs and N retention efficiency. Further, the mechanisms of N removal may vary as a function of inputs if plant-derived C promotes denitrification. These hypotheses were tested using field surveys and greenhouse microcosms simulating the colonization of desert stream channel sediments by herbaceous vegetation. In field surveys of wetland (ciénega) and gravelbed habitat, plant biomass was positively correlated with nitrate (NO₃ ^?) concentration. Manipulation of NO₃ ^? in flow-through microcosms produced positive relationships among NO₃ ^? supply, plant production, and tissue N content, and a negative relationship with root:shoot ratio. These results are consistent with N limitation of herbaceous vegetation in Sycamore Creek and suggest that N availability may influence transitions between and resilience of wetland and gravelbed stable states in desert streams. Increased biomass in high N treatments resulted in elevated rates of denitrification and shifts from co-limitation by C and NO₃ ^? to limitation by NO₃ ^? alone. Overall NO₃ ^? retention efficiency and the relative importance of denitrification increased with increasing N inputs. Thus the coupling of plant growth and microbial processes in low C environments alters the relationship between N inputs and exports due to increased N removal under high input regimes that exceed assimilative demand.     

New insights into viral structure and virus–cell interactions through proteomics

Although genomics techniques such as DNA microarrays have been widely used in virology, much more limited use has been made of proteomics. Although difficult, proteomics can greatly contribute to an understanding of virus–cell interactions, including the ternary structure of viral receptors at the cell surface, post-translational modifications and isoforms of critical viral and cellular proteins and even to the structure of viruses. Proteomics techniques also offer the potential for discovering markers for diagnostic and prognostic tests of viral infections in vivo. This review describes the use of several proteomic approaches for the analysis of HIV–cellular receptor interactions, the molecular mechanisms of transport of herpes simplex virus within neurons, and the structure of the tegument of herpes simplex virus.     

Differential proteomics reveals novel insights into Nosema–honey bee interactions

Host manipulation is a common strategy by parasites to reduce host defense responses, enhance development, host exploitation, reproduction and, ultimately, transmission success. As these parasitic modifications can reduce host fitness, increased selection pressure may result in reciprocal adaptations of the host. Whereas the majority of studies on host manipulation have explored resistance against parasites (i.e. ability to prevent or limit an infection), data describing tolerance mechanisms (i.e. ability to limit harm of an infection) are scarce. By comparing differential protein abundance, we provide evidence of host-parasite interactions in the midgut proteomes of N. ceranae-infected and uninfected honey bees from both Nosema-tolerant and Nosema-sensitive lineages. We identified 16 proteins out of 661 protein spots that were differentially abundant between experimental groups. In general, infections of Nosema resulted in an up-regulation of the bee's energy metabolism. Additionally, we identified 8 proteins that were differentially abundant between tolerant and sensitive honey bees regardless of the Nosema infection. Those proteins were linked to metabolism, response to oxidative stress and apoptosis. In addition to bee proteins, we also identified 3 Nosema ceranae proteins. Interestingly, abundance of two of these Nosema proteins were significantly higher in infected Nosema-sensitive honeybees relative to the infected Nosema-tolerant lineage. This may provide a novel candidate for studying the molecular interplay between N. ceranae and its honey bee host in more detail.     

Evolutionary and population dynamics of host–parasitoid interactions

The role of evolutionary dynamics in understanding host–parasitoid interactions is interlinked with the population dynamics of these interactions. Here, we address the problems in coupling evolutionary and population dynamics of host–parasitoid interactions. We review previous theoretical and empirical studies and show that evolution can alter the ecological dynamics of a host–parasitoid interaction. Whether evolution stabilizes or destabilizes the interaction depends on the direction of evolutionary changes, which are affected by ecological, physiological, and genetic details of the insect biology. We examine the effect of life history correlations on population persistence and stability, embedding two types, one of which is competitively inferior but superior in encapsulation (for parasitoid, virulence), in a Nicholson–Bailey model with intraspecific resource competition for host. If a trade-off exists between intraspecific competitive ability and encapsulation (or virulence, as a countermeasure) in both the host and parasitoid, the trade-off or even positive correlation in the parasitoid is less influential to ecological stability than the trade-off in the host. We comment on the bearing this work has on the broader issues of understanding host–parasitoid interactions, including long-term biological control. Received: November 10, 1998 / Accepted: January 18, 1999     

Plant–animal interactions in seagrass beds: ongoing and future challenges for understanding population and community dynamics

Seagrass beds are some of the most productive parts of coastal ecosystems, hosting a wide variety of associated fauna. This paper reviews recent studies of animal–plant interactions in seagrass beds, focusing particularly on studies conducted in Japan and Thailand. Although the positive effect of seagrass habitat structure on animals has been widely acknowledged, the magnitude of this effect varies greatly among studies. A comparative study on epifaunal communities and a manipulative experiment using an infaunal bivalve revealed that behavioral and life-history traits of component species and their interactions influence the observed variation. Some recent studies have challenged the previously accepted view that direct herbivory on seagrasses is rare, and has a minor effect on the seagrass community. A series of studies of dugong herbivory revealed that the marine mammal has great impacts not only on seagrass productivity but also on the infaunal community. Furthermore, it has been found that seed predators have a negative influence on seed production and the subsequent recruitment of seagrass. Recent studies have also demonstrated significant effects of fine-scale landscape patterns in seagrass vegetation on productivity, species interactions and community structure in seagrass beds. Future research integrating new concepts and theories in ecology, such as metapopulation and hierarchy theories, with new research tools, such as molecular-genetic analyses and remote-sensing techniques, may aid in developing a more comprehensive understanding of population and community dynamics in seagrass beds.This article is an invited review contributed by the winner of the 2003 Population Ecology Young Scientist Award.     

Identification of barley genetic regions influencing plant–microbe interactions and carbon cycling in soil

Plant and Soil - Forest management towards increased carbon (C) sequestration has repeatedly been suggested as a “natural climate solution”. We evaluated the potential of altered...     

Soil nitrogen dynamics and relationships with maize yields in a gliricidia–maize intercrop in Malawi

Many soils of southern Africa are severely N deficient, but inorganic fertilizers are unaffordable for most subsistence farmers. Rotations and intercrops of legumes with crops may alleviate N deficiency through biological N₂ fixation and redistribution of subsoil N to the surface. We monitored soil inorganic N dynamics for two seasons in a gliricidia [Gliricidia sepium (Jacq.) Walp.] – maize (Zea mays L.) intercrop in the unimodal rainfall area of southern Malawi. One maize crop per year was grown with or without interplanted gliricidia, in factorial combination with three rates of N (0, 24 or 48 kg N ha^-1). Application of gliricidia prunings increased (p < 0.001) topsoil (0 to 20 cm) inorganic N at the end of the dry season and during the early rains. Differences between plus and minus gliricidia treatments were less when total inorganic N to 1-m depth was summed. A greater proportion of the total inorganic N to 1-m depth occurred in the topsoil (0 to 20 cm) when gliricidia was present, suggesting that redistribution of subsoil N to the surface accounted for part of the N increase by gliricidia. Gliricidia lowered (p < 0.05) subsoil water content during drier periods. Gliricidia plots accumulated more (p < 0.01) ammonium-N during the dry season. Nitrate-N remained constant during the dry season but rose rapidly in gliricidia plots after the onset of rains. A 2-factor model including preseason inorganic N and anaerobic N mineralization potential accounted for 84% of the variability in maize yields for the two seasons' data combined. The combination of preseason inorganic N and potential N mineralization appears to provide a good estimate of N supply to maize in systems receiving both organic and inorganic sources of N. This revised version was published online in June 2006 with corrections to the Cover Date.     

The role of nitrogen in climate change and the impacts of nitrogen–climate interactions in the United States: foreword to thematic issue

Producing food, transportation, and energy for seven billion people has led to large and widespread increases in the use of synthetic nitrogen (N) fertilizers and fossil fuel combustion, resulting in a leakage of N into the environment as various forms of air and water pollution. The global N cycle is more severely altered by human activity than the global carbon (C) cycle, and reactive N dynamics affect all aspects of climate change considerations, including mitigation, adaptation, and impacts. In this special issue of Biogeochemistry, we present a review of the climate–nitrogen interactions based on a technical report for the United States National Climate Assessment presented as individual papers for terrestrial and aquatic ecosystems, agriculture and human health within the US. We provide a brief overview of each of the paper’s main points and conclusions is presented in this foreword summary.     

Integrating ancient patterns and current dynamics of insect–plant interactions: Taxonomic and geographic variation in herbivore specialization

Abstract The search for pattern in the ecology and evolutionary biology of insect–plant associations has fascinated biologists for centuries. High levels of tropical (low-latitude) plant and insect diversity relative to poleward latitudes and the disproportionate abundance of host-specialized insect herbivores have been noted. This review addresses several aspects of local insect specialization, host use abilities (and loss of these abilities with specialization), host-associated evolutionary divergence, and ecological (including “hybrid”) speciation, with special reference to the generation of biodiversity and the geographic and taxonomic identification of “species borders” for swallowtail butterflies (Papilionidae). From ancient phytochemically defined angiosperm affiliations that trace back millions of years to recent and very local specialized populations, the Papilionidae (swallowtail butterflies) have provided a model for enhanced understanding of localized ecological patterns and genetically based evolutionary processes. They have served as a useful group for evaluating the feeding specialization/physiological efficiency hypothesis. They have shown how the abiotic (thermal) environment interacts with host nutrirional suitability to generate “voltinism/suitability” gradients in specialization or preference latitudinally, and geographical mosaics locally. Several studies reviewed here suggest strongly that the oscillation hypothesis for speciation does have considerable merit, but at the same time, some species-level host specializations may lead to evolutionary dead-ends, especially with rapid environmental/habitat changes involving their host plants. Latitudinal gradients in species richness and degree of herbivore feeding specialization have been impacted by recent developments in ecological genetics and evolutionary ecology. Localized insect–plant associations that span the biospectrum from polyphenisms, polymorphisms, biotypes, demes, host races, to cryptic species, remain academically contentious, with simple definitions still debated. However, molecular analyses combined with ecological, ethological and physiological studies, have already begun to unveil some answers for many important ecological/evolutionary questions.     

Shift in soil–plant nitrogen dynamics of an alpine–nival ecotone

We investigated the nitrogen (N) dynamics of an alpine–nival ecotone on Mt. Schrankogel, Tyrol, Austria, in relation to temperature. Natural abundance of ¹⁵N was used as a tool to elucidate differences in N cycling along an altitudinal transect ranging from 2,906 to 3,079 m, corresponding to a gradient in mean annual temperature of 2.4 °C. The amount of total soil N, of plant available N and soil C/N ratio decreased significantly with increasing altitude, whereas soil pH increased. Soil δ ¹⁵N decreased with increasing altitude from +2.2 to −2.1‰ and δ ¹⁵N of plant tissues (roots and leaves) decreased from −3.7 to −5.5‰. The large shift in soil δ ¹⁵N of 4.3‰ from the lowest to the highest site suggested substantial differences in N cycling in alpine and nival ecosystems in the alpine nival ecotone investigated. We concluded that N cycling at the alpine–nival ecotone is likely to be controlled by various factors: temperature, soil age and development, atmospheric N deposition and plant competition. Our results furthermore demonstrate that the alpine–nival ecotone may serve as a sensitive indicator of global change.     

Berberine–DNA complexation: New insights into the cooperative binding and energetic aspects

The equilibrium binding of the cytotoxic plant alkaloid berberine to various DNAs and energetics of the interaction have been studied. At low ratios of bound alkaloid to base pair, the binding exhibited cooperativity to natural DNAs having almost equal proportions of AT and GC sequences. In contrast, the binding was non-cooperative to DNAs with predominantly high AT or GC sequences. Among the synthetic DNAs, cooperative binding was observed with poly(dA).poly(dT) and poly(dG).poly(dC) while non-cooperative binding was seen with poly(dA–dT).poly(dA–dT) and poly(dG–dC).poly(dG–dC). Both cooperative and non-cooperative bindings were remarkably dependent on the salt concentration of the media. Linear plots of ln K_a versus [Na⁺] for poly(dA).poly(dT) and poly(dA–dT).poly(dA–dT) showed the release of 0.56 and 0.75 sodium ions respectively per bound alkaloid. Isothermal titration calorimetry results revealed the binding to be exothermic and favoured by both enthalpy and entropy changes in all DNAs except the two AT polymers and AT rich DNA, where the same was predominantly entropy driven. Heat capacity values (ΔCp^o) of berberine binding to poly(dA).poly(dT), poly(dA–dT).poly(dA–dT), Clostridium perfringens and calf thymus DNA were − 98, − 140, − 120 and − 110 cal/mol K respectively. This study presents new insights into the binding dependent base pair heterogeneity in DNA conformation and the first complete thermodynamic profile of berberine binding to DNAs.     

Comparative proteome profiling of host–pathogen interactions: insights into the adaptation mechanisms of Francisella tularensis in the host cell environment

The intracellular pathogens have the unique capacity to sense the host cell environment and to respond to it by alteration in gene expression and protein synthesis. Proteomic analysis of bacteria exposed directly to the host cell milieu might thus greatly contribute to the elucidation of processes leading to bacterial adaptation and proliferation inside the host cell. Here we have performed a global proteome analysis of a virulent Francisella tularensis subsp. holarctica strain during its intracellular cycle within the macrophage-like murine cell line J774.2 using the metabolic pulse-labeling of bacterial proteins with ³⁵S-methionine and ³⁵S-cysteine in various periods of infection. The two-dimensional gel analysis revealed macrophage-induced bacterial proteome changes in which 64 identified proteins were differentially expressed in comparison to controls grown in tissue culture medium. Nevertheless, activation of macrophages with interferon gamma before in vitro infection decreased the number of detected alterations in protein levels. Thus, these proteomic data indicate the F. tularensis ability to adapt to the intracellular hostile environment that is, however, diminished by prior interferon gamma treatment of host cells.