Time-resolved fluorescence depolarization measurements of F-actin binding to myosin subfragments-1 bearing different alkali light chains.

Experiments were designed to test for functional differences which might shed light on the differences in actin-activated ATPase activities recently reported for myosin subfragments-1 bearing different light chains. By using the method of A. G. Weeds and R. S. Taylor (1975, Nature (London)257, 54), two types of subfragment-1 (S-1) from myosin of rabbit fast skeletal muscle were prepared: (S-1)·A1 and (S-1)·A2 bearing, respectively, the alkali-1 and alkali-2 light chains. (In agreement with the findings of these investigators, actin enhanced the ATPase activity of (S-1)·A1 more than that of (S-1)·A2 at lower actin concentrations.) Through use of time-resolved fluorescence depolarization techniques, the affinity constants for the binding of the two types of S-1 to F-actin in the absence of ATP were found to be very similar: 3.4 ± 0.3 × 10⁶m^?1 (N = 10) for (S-1)·A1 and 3.9 ± 0.2 × 10⁶m^?1 (N = 7) for (S-1)·A2 of one preparation, and 6.4 ± 0.2 × 10⁶m^?1 (N = 6) for (S-1)·A1 and 7.7 ± 0.5 × 10⁶m^?1 (N = 12) for (S-1)·A2 of another preparation (pH 7.0, 25 °C, 0.28 m KCl, 1.5 mm MgCl₂, 0.5 mm ethylene glycol bis (β-aminoethyl ether) N,N′-tetracetic acid, 10 mm imidazole, and 0.1 mmN-tris (hydroxymethyl) methyl-2-aminoethane sulfonate). The affinity constants for the two species of S-1 and actin also have a similar dependence on ionic strength and are not affected by addition of 0.6 mm CaCl₂ to the above solution. The CaATPase (or the CaITPase) activities of the two species of S-1 show the same pH dependence.     

Exchange integral for a variety of tetranuclear ferredoxins

The temperature dependence of EPR spectra of oxidized [4Fe-4S1]^{(?1, ?2)} ferredoxins (previously designated HiPIP) and a reduced [4Fe-4S1]^(?2,?3) ferredoxin have been analyzed so as to determine the energy of a low-lying excited electronic state. The values obtained were: Center S-3 from beef heart, 44 cm^?1; Center S-3 from mung bean, 53 cm^?1; the [4Fe-4S1]^(?1,?2) ferredoxin from Thermus thermophilus, 78 cm^?1; Center N-2 of NADH ubiquinone reductase, 83 cm^?1. Increasing axial distortion in the EPR spectra of the [4Fe-4S1]^(?1,?2) ferredoxins was associated with higher energy differences. Center N-2, a [4Fe-4S1]^(?2,?3) iron-sulfur cluster does not fit this relationship.     

Further studies on the specific interaction of S-100 protein with synaptosomal particulates.

Abstract— The specific interaction of S-100 protein with disrupted synaptosomes was further investigated. The specific binding is a saturable and reversible process, and is time, temperature, and strictly Ca²⁺ -dependent. Two affinities affect the interaction (K_ins= 7.04 × 10^?9 M. 1.28 × 10¹² binding sites/ mg protein; K_ins2= 3.91 × 10^?7M, 2.96 × 10¹³ binding sites/mg protein). The half-saturation time is about 5.5 min at 37°C. The half-life of the complex is 17 min at 37°C. At 0°C the binding is 75% slower than at 37° C, and only one-third of the binding sites are involved. The binding capacity is decreased by high NaCl concentrations and by pretreating membranes at high temperatures. Digestion of membranes with trypsin practically abolishes the specific binding. Treatment of membranes with phospholipase C decreases the specific binding, while phospholipase D enhances it to some extent. Other lipid extractors decrease significantly the extent of the interaction. Synaptic plasma membranes seem to be the synaptosomal component involved in the high affinity binding. The S-100 binding activity seems to undergo developmental changes, the adult values of kinetic parameters being reached around the 16th postnatal day in the rat. The results are discussed also in relation to the membrane-bound fraction of S-100.     

Synthesis,characterization, and reactions of 2′-, 3′-, and 5′-(2-bromoethyl)-AMP: Potential affinity labels for nucleotide binding sites in enzymes

Two new adenosine analogs, 2′-(2-bromoethyl) adenosine monophosphate and 3′-(2-bromoethyl) adenosine monophosphate, were synthesized, purified by semipreparative high-pressure liquid chromatography, and completely characterized. A new synthesis of 5′-(2-bromoethyl) adenosine monophosphate is presented which facilitates the preparation of radioactive reagent with label either in the ethyl group or the purine ring of the nucleotide derivative. The reactive moiety of these derivatives, a bromoalkyl group, has the ability to react with the nucleophilic side chains of several amino acids. The second-order, pH-independent rate constants for reaction with the side chains of the amino acids cysteine, lysine, histidine, and tyrosine were determined as 3×10^?4, 6×10^?6, 3×10^?7, and <1×10^?7 M^?1 sec^?1, respectively. These data could be use in estimating the rate enhancement observed in modification of a protein by these affinity-labeling reagents. 5′-(S-(2-hydroxyethyl)cysteine) adenosine monophosphate, the derivative expected from exhaustive digestion of protein in which a cysteinyl residue is modified by 5′-(2-bromoethyl) adenosine monophosphate, and S-2-hydroxyethyl)cysteine, the derivative anticipated upon acid hydrolysis of such a modified protein, were synthesized, characterized, and their elution positions from an amino acid analyzer determined. These bromoethyl AMP derivatives are potential affinity labels for enzymes that bind 2′-, 3′-, or 5′-nucleotides such as TPN, coenzyme A, or ADP, respectively.     

The effects of external electric field: creating non-zero first hyperpolarizability for centrosymmetric benzene and strongly enhancing first hyperpolarizability for non-centrosymmetric edge-modified graphene ribbon H2N-(3,3)ZGNR-NO2

How to generate a non-zero first hyperpolarizability for a centrosymmetric molecule is a challenging question. In this paper, an external (pump) electric field is used to make a centrosymmetric benzene molecule generate a non-zero value of the electric field induced first hyperpolarizability (β ^F ). This comes from the centrosymmetry breaking of electron cloud. Two interesting rules are exhibited. (1) β ^F is anisotropic for different directional fields (F _i, i?=?X, Y, Z). (2) The field dependence of β ^F is a non-monotonic function, and an optimum external electric field causes the maximum value of β ^F . The largest first hyperpolarizability β ^F reaches the considerable level of 3.9?×?10⁵ a.u. under F _Y?=?330?×?10^?4 a.u. for benzene. The external electric field effects on non-centrosymmetric edge-modified graphene ribbon H₂N-(3,3)ZGNR-NO₂ was also studied in this work. The first hyperpolarizability reaches as much as 2.1?×?10⁷ a.u. under F _X?=?600?×?10^?4 a.u. for H₂N-(3,3)ZGNR-NO₂. We show that the external electric field can not only create a non-zero first hyperpolarizability for centrosymmetric molecule, but also remarkably enhance the first hyperpolarizability for a non-centrosymmetric molecule.     

Hepatosplenomegaly and phytotoxicity of a planktonic cyanobacterium Nostoc sp. BHU001 isolated from agricultural pond

Nostoc sp. BHU001, a planktonic cyanobacterium isolated from an agricultural pond in India, was examined for its toxicity. Mice, administered intraperitoneally with Nostoc sp. BHU001 crude extract (50 mg kg^?1 body weight) died at 4.5 h. Examination of liver and spleen showed microcystin (MC)-like symptoms. Serum enzyme aspartate aminotransferase (AST) and alanine aminotransferase (ALT) activities increased by 1.6–1.8 and 2.6–3.0-folds, respectively at 50 and 100 mg crude extract kg^?1 body weight. Thin layer chromatography of the crude extract produced five bands (N-1 to N-5). UV absorption maxima of band N-4 corresponded to that of standard microcystin-LR. Further analysis of the band N-4 by high-performance liquid chromatography gave a retention time (R _t ) of 4.61 min similar to that of standard microcystin–LR (LR stands for lysine and arginine). Total MC content was quantified by enzyme-linked immunosorbent assay, and was 189.9 μg g^?1 of crude extract, 9.8 μg l^?1 of spent medium and 5.5 μg l^?1 of pond water. Exposure of rice (Oryza sativa var. Sonam) seeds to the crude extract did not affect their germination, but inhibited the root and shoot growth of seedlings by 27.3 and 42.89 folds at 3 mg ml^?1 crude extract, respectively.     

Studying the interaction between three synthesized heterocyclic sulfonamide compounds with hemoglobin by spectroscopy and molecular modeling techniques

The interaction between synthesized heterocyclic benzene sulfonamide compounds, N-(7-benzyl-56-biphenyl-2m-tolyl-7H-pyrrolo[23-d]pyrimidine–4–yl)-benzene sulfonamide (HBS₁), N-(7-benzyl-56-biphenyl-2-m-tolyl-7H-pyrrolo[23-d] pyrimidine-4-yl)-4-methyl- benzene sulfonamide (HBS₂), and N-(7-benzyl-56-biphenyl-2-m-tolyl-7H-pyrrolo[23-d]pyrimidine-4-yl)-4-chloro-benzene sulfonamide (HBS₃) with Hb was studied by fluorescence quenching, zeta potentional, circular dichroism, and molecular modeling techniques. The fluorescence spectroscopy experiments were performed in order to study the conformational changes, possibly due to a discrete reorganization of Trp residues during binding between HBS derivatives and Hb. The variation of the K_SV value suggested that hydrophobic and electrostatic interactions were the predominant intermolecular forces stabilizing the complex. The K_SV1 ans K_SV2 values of HBS derivatives with Hb are .6 × 10¹³ and 3 × 10¹³ M^?1 for Hb–HBS₁, 1 × 10¹³ and 4 × 10¹³ M^?1 for Hb–HBS₂, .9 × 10¹³, and 6 × 10¹³ M^?1 for Hb–HBS₃, respectively. The molecular distances between Hb and HBS derivatives in binary and ternary systems were estimated according to Förster’s theory of dipole–dipole non-radiation energy transfer. The quantitative analysis data of circular dichroism spectra demonstrated that the binding of the three HBS derivatives to Hb induced conformational changes in Hb. Changes in the zeta potential of the Hb–HBS derivatives complexes demonstrated a hydrophobic adsorption of the anionic ligand onto the surface of Hb as well as both electrostatic and hydrophobic adsorption in the case of the complex. The modeling data thus confirmed the experimental results. This study is expected to provide important insight into the interaction of Hb with three HBS derivatives to use in various toxicological and therapeutic processes.     

N-(5'-phospho-4'-pyridoxyl)amines as substrates for pyridoxine (pyridoxamine) 5'-phosphate oxidase

A preparation of pyridoxine (pyridoxamine) 5′-phosphate oxidase, with a specific activity of 9,400 nmoles/hr/mg protein, 10-fold higher than that previously reported, was used to study the oxidation of various N-(5′-phospho-4′-pyridoxyl)amines. Values for K_m, from 3.1 × 10^?5 M to 1.6 × 10^?3 M, and for V_max, relative to pyridoxamine-P, of 20 to 140% were obtained. Compounds lacking a 5′-phosphate were not substrates, and the enzymic reaction was dependent on the presence of both FMN and O₂. N-(phosphopyridoxyl)-L-amino acids had lower K_m's than the corresponding -D-amino acid compounds. When 1-¹⁴C-N-(phosphopyridoxyl)glycine was used as a substrate, no ¹⁴CO₂ was evolved, and 1-¹⁴C-glycine was detected in the incubation mixture.     

Inactivation of E. coli RNA polymerase by pyridoxal 5'-phosphate: identificationof a low pKa lysine as the modified residue.

The inactivation of E. coli RNA polymerase (3.3 × 10^?7M) by pyridoxal 5′-phosphate (1 × 10^?4M to 5 × 10^?4M) is a first order process with respect to the remaining active enzyme. Studies of the variation of the first order rate constant with the concentration of pyridoxal 5′-phosphate show that the inactivation reaction follows saturation kinetics. The formation of a reversible enzyme-inhibitor intermediate is postulated. Kinetic studies at different pH values indicate that the inactivation rate constant depends on the mole fraction of one conjugate base with pK_a 7.9. The apparent equilibrium constant (association) for the inactivation reaction is independent of the pH and is 1.8 × 10⁴ M^?1. By electrophoretic and chromatographic analysis of enzyme hydrolyzates after pyridoxal 5′-phosphate and NaBH₄ treatment only N-ε-pyridoxyllysine was found. It is postulated that a lysine ε-amino group with a low pK_a is critical for the activity of the enzyme.     

Motion of myosin fragments during actin-activated ATPase: fluorescence correlation spectroscopy study.

The rates of the translational motion of myosin fragments, heavy meromyosin (HMM), and heavy meromyosin subfragment-1 (HMM S-1) were measured during actin-activated ATPase reaction by the method of fluorescence correlation spectroscopy. This technique monitors the random fluctuations in the concentration of fluorescent molecules in an open volume which result from the translational diffusion of the molecular species under observation. The statistical behavior of the fluctuations is represented in the form of the autocorrelation function, which is related to the translational diffusion coefficient of the fluorescent molecules. The translational motion of fluorescently labeled myosin fragments was progressively slowed down after additions of increasing amounts of actin in the presence of excess MgATP. When these results are interpreted according to a simple binding scheme, the extent of the retardation can be used to obtain the apparent association constant for binding of S-1 and HMM to actin in the presence of MgATP. In 0.1M KCl and at 23°C, the apparent association constants were determined as K_app^HMM = 2.2 × 10⁴M^?1 and K_app^S-1 = 8.8 × 10³ for HMM and S-1, respectively.     

Effects of halothane on channel activity of N-acetyl gramicidin

A design principle effective for generating inhibitors of angiotensin converting enzyme has been successfully extended to inhibitors of another Zn⁺⁺ endopeptidase, thermolysin. Hence, N-(1-carboxy-3-phenylpropyl)LeuTrp is found to be a potent inhibitor of thermolysin, K_i ～ 5 × 10^?8 M.     

Uniconazole (S-3307) strengthens the growth and cadmium accumulation of accumulator plant Malachium aquaticum

The effects of uniconazole (S-3307) application on the growth and cadmium (Cd) accumulation of accumulator plant Malachium aquaticum (L.) Fries. were studied through a pot experiment. The application of S-3307 increased the biomass and photosynthetic pigment content of M. aquaticum in Cd-contaminated soil, and also improved the superoxide dismutase (SOD) and peroxidase (POD) activities in M. aquaticum. Application of S-3307 increased Cd content in shoots and decreased Cd content in roots of M. aquaticum, but the translocation factor (TF) of M. aquaticum increased with the increase of S-3307 concentration. For phytoextraction, the application of S-3307 increased Cd extractions by roots, shoots and whole plants of M. aquaticum, and the maxima were obtained at 75 mg L^?1 S-3307, which increased by 22.07%, 37.79% and 29.07%, respectively, compared with their respective controls. Therefore, S-3307 can be used for enhancing the Cd extraction ability of M. aquaticum, and 75 mg L^?1 S-3307 was the optimal dose.     

Germination Promotant for Plants Seed,produced by Microorganisms

The culture filtrate of the Streptomyces sp. S-580 showed strong activity in promoting the germination of rice plant seeds. The culture conditions of the strain and fractionation of the active principles from the culture filtrate were investigated. The active crude syrup (A.C.S.) obtained is effective at the dilution of 10^?5 ~ 10^?8 for the germination of rice plant seeds, 10^?5~10^? for barley and oats seeds.     

A simple procedure for resolution of Escherichia coli RNA polymerase holoenzyme from core polymerase.

The association constant, K_A, for myosin subfragment-1 binding to actin was measured as a function of ionic strength [KCl, LiCl, and tetramethylammonium chloride (TMAC)]and temperature by the method of time-resolved fluorescence depolarization. The following thermodynamic values were obtained from solutions of 0.20 × 10^?6m S-1, 1.00 × 10^?6m actin in 0.15 m KCl, pH 7.0, at 25 °C: ΔG ° = ?39 ± 1 kJ M^?1, ΔH⁰ = 44 ± 2 kJ M^?1 and $\text{ΔS}{}^0\text{= 0.28 ± 0.01 kJ}\text{M}{}^{\mathrm{?1}}{}^0\text{K}{}^{\mathrm{?1}}$. For measurements in KCl (0.05 to 0.60 m), In $\text{K}{}_{\mathrm{a}}\text{= ?8.36 (KCl)}{}^{\mathrm{<mtext>1</mtext><mtext>2</mtext>}}$. Thus, the binding is endothermic and strongly inhibited by high ionic strength. When KCl was replaced by LiCl or TMAC the ionic effects on the binding were cation specific. The nature of actin-(S-1) binding in the rigor state is discussed in terms of these results.     

Sporulation of Bacilli

Ингибирование обра зования в формирова нии спор ме гатерий было разраб отано дополнение не с рекламой (10^?4M) к культивировани я средних до. Небольш ое коли чество³⁵S-назы вают ам инокислотам или метионин был и добавлены одновре менно и включение их в клето к по оценкам. Было уст ановлено что:

1. 1.
   Включение обоих³⁵S-ма ркировку аминокисл оты цистеина и метио нина в белок фракции клеток препятствуе т культуры значител ьно ниже чем что в кле тках контроль культ уры. Во время торможе ния и только неисправных спор с низким кальцием со держание, формируют ся.     
   
   

Determination of Glyphosate and AMPA in Three Representative Agricultural Austrian Soils with a HPLC-MS/MS Method

We developed a novel method to quantify adsorbed glyphosate and AMPA in soils based on an extraction utilizing Na-tetraborate, an SPE clean-up step, and subsequent LC-MS detection. Reversed phase-based separation of glyphosate and AMPA was realized after FMOC-derivatization. The quantification involved external calibration and 1,2–¹³C, ¹⁵N- labeled glyphosate as well as ¹³C, ¹⁵N labeled AMPA as internal standards. The optimum recovery for extraction was obtained with 40 mM Na-tetraborate. The method was applied in three representative soils (Kirchberg, Phyra, and Pixendorf, Austria) where glyphosate was applied by standard agricultural practices. The recovery for glyphosate extracted with 40 mM Na-tetraborate buffer was 93.5% (RSD <2%) for glyphosate at Kirchberg-cambisol; 95.7% (RSD < 2%) at Pixendorf- chernozem and 79.1% (RSD <7%) at Phyra-stagnosol. The corresponding values for AMPA were 92.4% (RSD <2%) at Kirchberg, 98.1% (RSD <2%) at Pixendorf and 69.9% (RSD <4%) at Phyra. The limits of detection for glyphosate were 6.8 μg kg^?1(RSD <10%) at Kirchberg, 4.3 μg kg^?1 (RSD <10%) at Pixendorf, and 46.5 μg kg^?1 (RSD <7%) at Phyra. The limits of detection for AMPA were 26.7 μg kg^?1 (RSD <10%) at Kirchberg, 25.2 μg kg^?1 (RSD <10%) at Pixendorf, and 120.3 μg kg^?1 (RSD <9%) at Phyra. Accordingly, the limits of quantification were 22.7 μg kg^?1(RSD <5%) for glyphosate, and 88.9 μg kg^?1 (RSD <2%) for AMPA at Kirchberg and respectively 14.4 μg kg^?1 (RSD <6%) and 84 μg kg^?1 (RSD <5%) at Pixendorf and 13.8 μg kg^?1 (RSD <6%) and 87.2 μg kg^?1 (RSD <8%) at Phyra. Both substances in the soils were lower than the LOQ before applying the herbicide Roundup. The influence of higher contents of iron oxides, clay, and acidic pH, resulting in a more pronounced adsorption of glyphosate and AMPA in the soils of Phyra and Kirchberg, is demonstrated.     

A chimeric α-amylase engineered from <Emphasis Type="Italic">Bacillus acidicola</Emphasis> and G<Emphasis Type="Italic">eobacillus thermoleovorans</Emphasis> with improved thermostability and catalytic efficiency

The α-amylase (Ba-amy) of Bacillus acidicola was fused with DNA fragments encoding partial N- and C-terminal region of thermostable α-amylase gene of Geobacillus thermoleovorans (Gt-amy). The chimeric enzyme (Ba-Gt-amy) expressed in Escherichia coli displays marked increase in catalytic efficiency [K _cat: 4 × 10⁴ s^?1 and K _cat/K _m: 5 × 10⁴ mL^?1 mg^?1 s^?1] and higher thermostability than Ba-amy. The melting temperature (T _m) of Ba-Gt-amy (73.8 °C) is also higher than Ba-amy (62 °C), and the CD spectrum analysis revealed the stability of the former, despite minor alteration in secondary structure. Langmuir–Hinshelwood kinetic analysis suggests that the adsorption of Ba-Gt-amy onto raw starch is more favourable than Ba-amy. Ba-Gt-amy is thus a suitable biocatalyst for raw starch saccharification at sub-gelatinization temperatures because of its acid stability, thermostability and Ca²⁺ independence, and better than the other known bacterial acidic α-amylases.     

IgE-mediated 14C-serotonin release from rat mast cells modulated by morphine and endorphins

The formaldehyde method was used to examine the interaction of PGE₁ with morphine, β-endorphin and Met-enkephalin on rat mast cells by their effects on IgE-mediated ¹⁴C-serotonin release. PGE₁ (2×10^?8?2×10^?5 M) caused a dose-related inhibition of the mediator release 1 min after an antigen challenge, and morphine (3×10^?7?3×10^?5 M) reversed this PGE₁ effect dose-dependently and stereospecifically; naloxone (2×10^?4 M) antagonized this action of morphine. β-Endorphin (3×10^?7?10^?5 M) and Met-enkephalin (3×10^?6?10^?4 M) mimicked this morphine action dose-dependently and were antagonized by naloxone (2×10^?4 M). These results suggest that morphine and endorphins modulate immunological mediator release from rat mast cells through opioid receptors.     

Diazepinone Nucleosides as Inhibitors of Cytidine Deaminase.

Abstract

The synthesis of 2′-deoxy and 2′,3′-dideoxy derivatives of 1-ß-D-ribofuranosyl-1,3,4,7-tetrahydro-2H-1,3-diazepin-2-one (2) was undertaken in order to find new cytidine deaminase (CDA) inhibitors and potential adjuvants in anticancer chemotherapy. Replacement of ribose by a 2-deoxyribose moiety led to compound 9 that appeared slightly more potent than 2 (Ki = 2.5 × 10^?8 M). Remarkably, the corresponding α-2′-deoxynucleoside 10 acted as a very potent inhibitor of human placenta CDA, with a Ki = 7.5 × 10^?8 M. Attempt to synthesize the 2′,3′-dideoxy derivative of 2 led to N-[4,5-dihydroxy-1-(2-oxo-2,3,4,7-tetrahydro[1,3] diazepin-1-yl)-pentyl]-2,2,2-trifluoroacetamide (13), which is devoid of CDA inhibitory activity.     

Linking Microbial Community Structure to S,N and Fe Biogeochemical Cycling in the Hot Springs at the Tengchong Geothermal Fields,Southwest China

Sediment and water samples collected from one acidic and three alkaline high temperature hot springs at the Tengchong terrestrial geothermal field, Southwest China, were examined using mineralogical, geochemical, and molecular biological techniques. The mineralogical and geochemical analyses suggested that these hot springs contained relatively high concentrations of S, Fe and N chemical species. Specifically, the acidic water was rich in Fe²⁺, SO₄^2? and NH₄⁺, while the alkaline waters were high in NO₃^?, H₂S and S₂O₃^?. Analyses of 16S rRNA gene sequences showed their bacterial communities were dominated by phyla Aquificae, Cyanobacteria, Deinococci-Thermus, Firmicutes, Proteobacteria, and Thermodesulfobacteria, while the archaeal clone libraries were dominated by orders Desulfurococcales, Sulfolobales, and Thermoproteales. Potential S-, N- and Fe-metabolizing prokaryotes were present at a relatively high proportion, but with large differences in the diversity and metabolic functions of each sample. These findings provide implications for uncovering microbial functions in elemental biogeochemical cycles within the Tengchong geothermal environments: i). the distinct differences in abundance and diversity of microbial communities in geothermal sediments were related to different in situ physicochemical conditions; ii). the S-, N- and Fe-related prokaryotes would take advantage of the strong chemical disequilibria in the hot springs; and iii). in return, their metabolic activities could promote the transformation of the S, Fe and N chemical species, thereby forming the basis of biogeochemical cycles in the terrestrial geothermal environments.