Behind every great ant, there is a great gut

Ants are quite possibly the most successful insects on Earth, with an estimated 10 000 species worldwide, making up at least a third of the global insect biomass, and comprising several times the biomass of all land vertebrates combined. Ant species have diverse trophic habits, including herbivory, hunting/gathering, scavenging and predation and are distributed in diverse habitats, performing a variety of important ecosystem functions. Often they exert these functions while engaging in symbiotic associations with other insects, plants or microbes; however, remarkably little work has focused on the potential contribution of the ants’ gut symbionts. This issue of Molecular Ecology contains a study by Anderson et al. (2012) , who take a comparative approach to explore the link between trophic levels and ant microbiomes, specifically, to address three main questions: (i) Do closely related herbivorous ants share similar bacterial communities? (ii) Do species of predatory ants share similar bacterial communities? (iii) Do distantly related herbivorous ants tend to share similar bacterial communities? By doing so, the authors demonstrate that ants with similar trophic habits appear to have relatively conserved gut microbiomes, suggesting symbiont functions that directly relate to dietary preference of the ant host. These findings suggest an ecological role of gut symbionts in ants, for example, in metabolism and/or protection, and the comparative approach taken supports a model of co‐evolution between ant species and specific core symbiont microbiomes. This study, thereby, highlights the omnipresence and importance of gut symbioses—also in the Hymenoptera—and suggests that these hitherto overlooked microbes likely have contributed to the ecological success of the ants.     

Sinorhizobium americanus sp. nov., a new Sinorhizobium species nodulating native Acacia spp. in Mexico

The sinorhizobia isolated from root nodules of Acacia species native of Mexico constitute a diverse group of bacteria on the basis of their metabolic enzyme electromorphs but share restriction patterns of the PCR products of 16S rRNA genes and a common 500 kb symbiotic plasmid. They are distinguished from other Sinorhizobium species by their levels of DNA-DNA hybridization and the sequence of 16S rRNA and nifH genes. nolR gene hybridization patterns were found useful to identify sinorhizobia and characterize species. A new species, Sinorhizobium americanus, is described and the type strain is CFNEI 156 from Acacia acatlensis.     

Co-occurrence of tree species at fine spatial scale in a woodland cerrado,southeastern Brazil

Species co-occurrence at fine spatial scales is expected to be nonrandom in relation to species phylogenetic relatedness and functional similarity. On the one hand, closely related species that occur together and experience similar environmental conditions are likely to share phenotypic traits due to the process of environmental filtering. On the other hand, species that are too similar are unlikely to co-occur due to competitive exclusion. We surveyed a woodland cerrado, southeastern Brazil, to test whether co-occurrence in tree species shows functional or phylogenetic structuring at fine spatial scale. Searching for correlations between an index of species co-occurrence and both functional trait differences and phylogenetic distances, we provided evidence for a predominant role of environment filters in determining the co-occurrence of functionally similar tree species in cerrado. However, we did not find any effect of phylogenetic relatedness on tree species co-occurrence. We suggest that the phylogenetic relatedness of co-occurring cerrado tree species did not present a pattern, because the species functional traits were randomly distributed on the phylogeny. Thus, phylogenetic relatedness and functional similarity do not seem to limit the co-occurrence at fine spatial scale of cerrado tree species.     

Limited performance of DNA barcoding in a diverse community of tropical butterflies

DNA 'barcoding' relies on a short fragment of mitochondrial DNA to infer identification of specimens. The method depends on genetic diversity being markedly lower within than between species. Closely related species are most likely to share genetic variation in communities where speciation rates are rapid and effective population sizes are large, such that coalescence times are long. We assessed the applicability of DNA barcoding (here the 5' half of the cytochrome c oxidase I) to a diverse community of butterflies from the upper Amazon, using a group with a well-established morphological taxonomy to serve as a reference. Only 77% of species could be accurately identified using the barcode data, a figure that dropped to 68% in species represented in the analyses by more than one geographical race and at least one congener. The use of additional mitochondrial sequence data hardly improved species identification, while a fragment of a nuclear gene resolved issues in some of the problematic species. We acknowledge the utility of barcodes when morphological characters are ambiguous or unknown, but we also recommend the addition of nuclear sequence data, and caution that species-level identification rates might be lower in the most diverse habitats of our planet.     

Positive indirect effects in a coral reef fish community

Indirect effects occur when two species interact through one or more intermediate species. Theoretical studies indicate that indirect interactions between two prey types that share common predators can be positive, neutral or negative. We document a positive indirect interaction between different types of prey fish on coral reefs in Australia. A high abundance of one type of prey fish (cardinalfishes: Apogonidae) resulted in higher recruitment, abundance and species richness of other prey fish. Our evidence indicates that these effects were not due to differential settlement but were instead due to differential post-settlement predation. We hypothesize that resident piscivores altered their foraging behaviour by concentrating on highly abundant cardinal-fish when they were present, leaving recruits of other species relatively unmolested. Indirect effects were evident within 48 h of settlement and persisted throughout the 42-day experiment, highlighting the importance of early post-settlement processes in these communities.     

黑腹果蝇种组五种核型的报道

通过传统的敲片、Giemsa染色的方法, 本文首次对果蝇属黑腹果蝇种组的5种果蝇 （D. constricta、D. ohnishii、D. ogumai、D. pseudobaimaii、D. tani）染色体的数目和形态进行了分析报道。分析发现：这5个种具有相同的染色体数目（2n=8）和不同的形态。D. pseudobaimaii和D. tani 为2V,1R,1D型;D. constricta染色为2V,1R,1D型且其点状染色体难以辨认;D. ohnishii和D. ogumai 具有相同形态为2V,2R。另外,还发现核型与亲缘关系之间有一定的对应性。     

Production and energetic utilization of wood from short rotation coppice—a life cycle assessment

Purpose  

Ambitious targets for the use of renewable energy have recently been set in the European Union. To reach these targets, a large share of future energy generation will be based on the use of woody biomass. Therefore, there is an increasing interest in the cultivation of fast-growing tree species on agricultural land outside forests. Intensive crop production is always considered to harm the environment. The study explores the environmental burdens of the cultivation of fast-growing tree species on agricultural land and their subsequent energetic conversion in comparison to the fossil reference energy system.     

The influence of environmental factors and management methods on the vegetation of mesic grasslands in a central European mountain range

We examined how environmental factors combined with the diverse ways of the extensive management of mesic mountain grasslands affect species composition and diversity in the Polish part of Central Sudetes Mts. Based on the data from 100 research plots altitude, organic matter content and exchangeable magnesium in the soil, as well as the maximum soil water capacity and amount of sand fraction significantly affected species composition. Among the management methods, a significant effect on the differentiation of species composition was observed following the cessation of usage and mowing. Mown meadows had the highest share of forbs in the biomass, whereas those abandoned ones were dominated by tall and expansive grasses, mainly Calamagrostis epigejos. The species richest grasslands occurred in areas with soils of high water capacity, containing high concentrations of calcium and low amounts of total nitrogen. No significant effect of management methods on the total number of species as well as on the number of forb species was observed. Mown pastures had the highest mean value of the Shannon–Wiener diversity index.     

Cichlid Fishes from the La Plata Basin. Part IV. Review of the Apistogramma Species, with Description of a New Species (Teleostei, Cichlidae)

Apistogramma inconspicua sp.n. is described from the Rio Candclaria in the Rio Guaporé drainage in Bolivia, and recorded also from Cáceres on the Rio Paraguay in Brazil. The new species is closely related to the Paraguayan species A. commbrae (Regan) and an undescribed species in the Guaporé drainage system. These species share a specialized feature in the colour pattern, viz. an expanded vertical bar on the caudal peduncle which it confluent with the caudal spot. The now presumably complete record of Paraguayan Apistogramma species allows an analytical key to be given. Of the additional species, A. borellii (Regan) and A. trifasciata (Eigenmann & Kennedy) represent two distinct lineages. Apistogramma pleurotaenia (Regan) is probably a La Plata basin species, although no localities are known, and its relationship remain obscure. The assemblage of Paraguayan Apistogramma species reflects the heterogeneity of the Paraguayan cichlid fauna as a whole.     

Post-cranial skeletons of hypothyroid cretins show a similar anatomical mosaic as Homo floresiensis

Human remains, some as recent as 15 thousand years, from Liang Bua (LB) on the Indonesian island of Flores have been attributed to a new species, Homo floresiensis. The definition includes a mosaic of features, some like modern humans (hence derived: genus Homo), some like modern apes and australopithecines (hence primitive: not species sapiens), and some unique (hence new species: floresiensis). Conversely, because only modern humans (H. sapiens) are known in this region in the last 40 thousand years, these individuals have also been suggested to be genetic human dwarfs. Such dwarfs resemble small humans and do not show the mosaic combination of the most complete individuals, LB1 and LB6, so this idea has been largely dismissed. We have previously shown that some features of the cranium of hypothyroid cretins are like those of LB1. Here we examine cretin postcrania to see if they show anatomical mosaics like H. floresiensis. We find that hypothyroid cretins share at least 10 postcranial features with Homo floresiensis and unaffected humans not found in apes (or australopithecines when materials permit). They share with H. floresiensis, modern apes and australopithecines at least 11 postcranial features not found in unaffected humans. They share with H. floresiensis, at least 8 features not found in apes, australopithecines or unaffected humans. Sixteen features can be rendered metrically and multivariate analyses demonstrate that H. floresiensis co-locates with cretins, both being markedly separate from humans and chimpanzees (P<0.001: from analysis of similarity (ANOSIM) over all variables, ANOSIM, global R>0.999). We therefore conclude that LB1 and LB6, at least, are, most likely, endemic cretins from a population of unaffected Homo sapiens. This is consistent with recent hypothyroid endemic cretinism throughout Indonesia, including the nearby island of Bali.     

A survey for a trypanocidal factor in primate sera

The sera of 21 different species of primates were surveyed for the presence of a trypanocidal factor to a monomorphic human serum-sensitive clone of Trypanosoma brucei gambiense (T.b.g.); human, gorilla, baboon (2 species), and the mandrill were found to contain this factor. The factor in all the sera is in the high density lipoprotein (HDL) fraction, and has similar modes of biological action. It has been shown that the human and gorilla trypanocidal factor share cross-reactive antigenic epitopes, but do not share similar cross-reactive epitopes with the baboon and mandrill factor. There was no relationship between the presence or absence of this factor and the primate's position on the phylogenetic tree. In addition, there was also no obvious correlation between the animals' preferred diet, and the presence or absence of trypanocidal activity. The evidence to date suggests that only African ground-dwelling primates that live in tsetse endemic areas contain the trypanocidal factor. It is assumed that this factor is involved in resistance of these primates to T.b.b. We believe that the host has developed trypanocidal substances as a result of selective evolutionary pressure by the African trypanosomes.     

Factors influencing IUCN threat levels to orchids across Europe on the basis of national red lists

The red list has become a ubiquitous tool in the conservation of species. We analyzed contemporary trends in the threat levels of European orchids, in total 166 species characterized in 27 national red lists, in relation to their reproductive biology and growth form, distribution area, and land cover where they occur. We found that species in central Europe are more threatened than those in the northern, southern, or Atlantic parts of Europe, while species were least threatened in southern Europe. Nectarless and tuberous species are significantly more threatened than nectariferous and rhizomatous taxa. Land cover (ratios of artificial land cover, area of pastures and grasslands, forests and inland wetlands) also significantly impacted the threat level. A bigger share of artificial land cover increases threat, and a bigger share of pasture and grassland lowers it. Unexpectedly, a bigger share of inland wetland area in a country increased threat level, which we believe may be due to the threatened nature of wetlands themselves relative to other natural land cover types. Finally, species occurring in multiple countries are on average less threatened. We believe that large‐scale analysis of current IUCN national red lists as based on their specific categories and criteria may particularly inform the development of coordinated regional or larger‐scale management strategies. In this case, we advocate for a coordinated EU protection and restoration strategy particularly aimed at central European orchids and those occurring in wetland area.     

A Survey for a Trypanocidal Factor in Primate Sera

ABSTRACT. The sera of 21 different species of primates were surveyed for the presence of a trypanocidal factor to a monomorphic human serum-sensitive clone of Trypanosoma brucei gambiense (T.b.g.) ; human, gorilla, baboon (2 species), and the mandrill were found to contain this factor. The factor in all the sera is in the high density lipoprotein (HDL) fraction, and has similar modes of biological action. It has been shown that the human and gorilla trypanocidal factor share cross-reactive antigenic epitopes, but do not share similar cross-reactive epitopes with the baboon and mandrill factor. There was no relationship between the presence or absence of this factor and the primate's position on the phylogenetic tree. In addition, there was also no obvious correlation between the animals'preferred diet, and the presence or absence of trypanocidal activity. The evidence to date suggests that only African ground-dwelling primates that live in tsetse endemic areas contain the trypanocidal factor. It is assumed that this factor is involved in resistance of these primates to T.b.b. We believe that the host has developed trypanocidal substances as a result of selective evolutionary pressure by the African trypanosomes.     

Population structure of Leptothorax ambiguus,a facultatively polygynous and polydomous ant species

We examined the genetic and spatial structure of Leptothorax ambiguus in a Vermont site. Nests of this tiny ant species have variable queen number and comprise larger polydomous colonies, as do their closest relatives in North America. Nests are patchily distributed in the forest, and sometimes occur in local abundance. We collected 121 nests in four years from plots in which all nests were mapped; furthermore, we subjected nests collected in two separate years to starch gel electrophoresis and estimated relatedness according to the Queller—Goodnight (1989) algorithm. Queens that share a nest site also share 33% of their alleles on average, and relatedness among worker nestmates is about 0.5. The existence of diploid males and nonzero F-values demonstrate inbreeding in this species, an unusual phenomenon for social insects in general. Mapping data showed that nests with like genotypes tended to cluster in space, forming polydomous colonies. Colonies consisted of 1–6 nest subunits, and about half of all colonies were polygynous. We compare these features of L. ambiguus to its close relative L. longispinosus and a European congener L. acervorum. These comparisons allow us to conclude that an interplay between ecological and genetic factors produces the observed pattern of multiple queening and nest spatial distribution in this species.     

To breed or not to breed: a model of partial migration

Migration is used by a number of species as a strategy for dealing with a seasonally variable environment. In many migratory species, only some individuals migrate within a given season (migrants) while the rest remain in the same location (residents), a phenomenon called ‘partial migration’. Most examples of partial migration considered in the literature (both empirically and theoretically) fall into one of two categories: either species where residents and migrants share a breeding ground and winter apart, or species where residents and migrants share an overwintering ground and breed apart. However, a third form of partial migration can occur when non‐migrating individuals actually forgo reproduction, essentially a special form of low‐frequency reproduction. While this type of partial migration is well documented in many taxa, it is not often included in the partial migration literature, and has not been considered theoretically to date. In this paper we present a model for this partial migration scenario and determine under what conditions an individual should skip a breeding opportunity (resulting in partial migration), and under what conditions individuals should breed every chance they get (resulting in complete migration). In a constant environment, we find that partial migration is expected to occur when the mortality cost of migration is high, and when individuals can greatly increase their fecundity by skipping a year before breeding. In a stochastic environment, we find that an individual should skip migration more frequently with increased risk of a bad year (higher probability and severity), with higher mortality cost of migration, and with lower mortality cost of skipping. We discuss these results in the context of empirical data and existing life history theory.     

Macrogeographical variation in the song of a widely distributed African warbler

The songs of oscine passerine birds vary on many spatial scales, reflecting the actions of diverse evolutionary pressures. Here we examine the songs of Cisticola erythrops, which effectively signal species identity across a geographical area spanning 6500 km in sub-Saharan Africa. Selection for species identification should promote stability in song traits, while sexual selection and geographical segregation should promote diversity. Cisticola erythrops share syllable types across the entire range of species and structure songs similarly, but individuals sing highly variable songs through improvisational recombination of syllables. Patterns of syllable use change gradually across the range of the species and do not show distinct breaks at subspecies boundaries. The acoustic properties of the most common syllable type also change gradually with distance. The results illustrate how songs can be simultaneously species-specific and highly variable at an individual level. At a larger level, patterns of variation indicate that cultural drift has generated song diversity through an isolation by distance mechanism.     

Evidence that mycoplasmas, gram-negative bacteria, and certain gram-positive bacteria share a similar protein antigen.

It was demonstrated that mycoplasmas, gram-negative bacteria, and certain gram-positive bacteria share a similar protein antigen with a molecular weight ranging from 42,000 to 48,000. Western blotting (immunoblotting) with an antibody specific to a 43-kDa membrane protein of Mycoplasma fermentans showed the existence of this protein antigen in all Mycoplasma spp. tested (14 species), Acholeplasma laidlawii (1 strain), and gram-negative bacteria (8 species) but only in Staphylococcus aureus of four gram-positive species tested. Neither Ureaplasma urealyticum nor mammalian cell cultures showed any cross-reactions with this antibody. These proteins were found in both cytoplasmic and membrane fractions of mycoplasma cells but were not exposed on the surface of mycoplasmal or bacterial cells.     

Experiments with genitalia: a commentary

There has been a recent burst of studies of the function of genitalia, many of which share several important shortcomings. Given that further studies on this topic are likely (there are probably millions of species showing rapid genital divergence), I discuss the studies critically to promote clear formulation of hypotheses and interpretation of results in the future. I also emphasize some possibly important but neglected variables, including female stimulation, phylogenetic contexts, and the behavior of male genitalia, and outline simple techniques that could improve future studies.