Kin assortment in juvenile shoals in wild guppy populations

Grouping provides many potential benefits to individuals in terms of foraging and anti-predator protection. However, it has been suggested that individuals could gain additional benefits in terms of indirect fitness by grouping with kin. Surprisingly, the genetic composition of wild fish shoals and the importance of kin-associated shoaling remain poorly understood. The Trinidadian guppy (Poecilia reticulata) has life history traits that might promote kin structure of shoals such as internal fertilisation and small brood size in contrast to many other fish species. Even though previous studies did not find any indication of kin structure in shoals of adult guppies, it is possible that related juveniles remain together in shoals, partly because of lower mobility and because the advantages of kin association may change with age. Using 10 microsatellite markers, we conducted a genetic analysis on 40 shoals from four populations. Pair-wise relatedness was inferred using a modified version of the software package COLONY and permutation tests were conducted to test the hypothesis that kin occur together in juvenile shoals more often than expected by chance. The frequency of sib dyads among juveniles within shoals was significantly larger than that between shoals in two high predation populations but not in two low predation populations. This finding contributes to the understanding of factors underlying shoal composition and highlights the potential of recent methodological advances for detecting such relationships.     

Inbreeding avoidance mechanisms: dispersal dynamics in cooperatively breeding southern pied babblers

1.?Breeding with kin can reduce individual fitness through the deleterious effects of inbreeding depression. Inbreeding avoidance mechanisms are expected to have developed in most species, and especially in cooperatively breeding species where individuals may delay dispersal until long after sexual maturity. Such potential mechanisms include sex-biased dispersal and avoidance of kin known through associative learning. 2.?The investigation of inbreeding avoidance through dispersal dynamics can be enhanced by combining fine-scale population genetic structure data with detailed behavioural observations of wild populations. 3.?We investigate possible inbreeding avoidance in a wild population of cooperatively breeding southern pied babblers (Turdoides bicolor). A combination of genetic, geographic and observational data is used to examine fine-scale genetic structure, dispersal (including sex-biased dispersal) and inheritance of dominance in cooperatively breeding groups. 4.?Unusually, sex-bias in dispersal distance does not occur. Rather, individuals appear to avoid inbreeding through two routes. First, through dispersal itself: although both males and females disperse locally, they move outside the range within which genetically similar individuals are usually found, going twice as far from natal groups as from non-natal groups. Second, through avoidance of familiar group members as mates: individuals inherit a dominant position in the natal group only when an unrelated breeding partner is present. 5.?This study uses spatial genetic analyses to investigate inbreeding avoidance mechanisms in a cooperative breeder and shows that individuals of both sexes can avoid inbreeding through a dispersal distance mechanism. While it appears that dispersal allows most individuals to move beyond the range of closely related kin, matings may still occur between distant kin. Nevertheless, any costs of breeding with a distant relative may be outweighed by the benefits of local dispersal and the immense fitness gains available from attaining a breeding position.     

Aerobic capacity influences the spatial position of individuals within fish schools

The schooling behaviour of fish is of great biological importance, playing a crucial role in the foraging and predator avoidance of numerous species. The extent to which physiological performance traits affect the spatial positioning of individual fish within schools is completely unknown. Schools of juvenile mullet Liza aurata were filmed at three swim speeds in a swim tunnel, with one focal fish from each school then also measured for standard metabolic rate (SMR), maximal metabolic rate (MMR), aerobic scope (AS) and maximum aerobic swim speed. At faster speeds, fish with lower MMR and AS swam near the rear of schools. These trailing fish required fewer tail beats to swim at the same speed as individuals at the front of schools, indicating that posterior positions provide hydrodynamic benefits that reduce swimming costs. Conversely, fish with high aerobic capacity can withstand increased drag at the leading edge of schools, where they could maximize food intake while possibly retaining sufficient AS for other physiological functions. SMR was never related to position, suggesting that high maintenance costs do not necessarily motivate individuals to occupy frontal positions. In the wild, shifting of individuals to optimal spatial positions during changing conditions could influence structure or movement of entire schools.     

Species-specific schooling behaviour of fish in the freshwater pelagic habitat: an observational study

Social living of animals is a broadly occurring phenomenon, although poorly studied in freshwater systems, fish schooling behaviour is an excellent example. The composition of fish schools, species-specific schooling tendencies and preferences of adult fish were studied in the pelagic habitat of the Římov Reservoir, Czech Republic. Video recordings captured over a total of 34 days (16 h per day) in the clear water period of three seasons were analysed. From four species identified as school-forming species – bream, bleak, roach and perch, 40% of the individuals observed formed schools of 3–36 individuals. Although conspecific schools prevailed, 20% of individuals formed heterospecific schools, except bleak that schooled strictly with conspecifics. Schools were composed of individuals of similar body size and life strategy. Heterospecific schools were significantly larger than conspecific schools and showed uneven proportion among species, that is, one species being more abundant when the school dimension increased. Probability of encounter in bleak was lowest and proved highest inclination for schooling. Gregarianism levels depended on species morphology and body size, with larger and morphologically advanced fish tending less to sociability. This indicates that the antipredator function of schooling behaviour is intensified with increasing vulnerability of the species.     

Amphidromous fish school migration revealed by combining fixed sonar monitoring (horizontal beaming) with fishing data

Coastal and estuarine environments are particularly productive ecological systems and can provide protein and nutrient exports to adjacent marine ecosystems. In spite of this, studies of fish school migration patterns between lagoons and the sea are lacking. In 1999, fish samplings combining fishing and acoustic sonar field data collection were performed in two shallow water channel lagoons to monitor fish school diel migration (lagoon-sea). Lagoon fish assemblages included 15 species and 10 families. The estimated abundances and the fishes' swimming characteristics permit those detected by sonar to be selected according to 3 criteria. Direct sampling by cast net confirmed that Dicentrarchus labrax schools were present during the autumn migration period. In situ horizontal sonar observation in shallow water bodies constitutes a powerful tool for the study of fish behaviour. Fish school migration within the range of values recorded was not affected by current velocity (maximum 0.83 m/s). No relationships among school shape, surface area or migratory direction were found. The amphidromous schools were small (0.3 to 15 m²) and observed mainly at night. Migratory behaviour appeared to be determined to some extent by fluctuations in lagoon salinity and temperature. Consistent with the ‘multi-transit’ hypothesis, which states that schools pass several times in front of the sonar transducer before moving toward or away from the lagoon, the net flow of fish was less than that predicted by the sonar methodology. Thus the multi-transit behaviour hypothesis should be considered when interpreting fish population transfer data gathered with acoustic methods using a single transducer in rivers, estuaries, or channels. In addition, the exclusive use of echosounder could generate major biomass underestimation when the fish are grouped in schools.     

Adaptive winter survival strategies: defended energy levels in juvenile Atlantic salmon along a latitudinal gradient

Current knowledge suggests that patterns of energy storage and depletion in animals are governed by behavioural trade-offs between risks associated with feeding and future energy demands. However, the length of adverse periods varies over geographical or climatic gradients. To explore the potential for genotypic sources of variation in behavioural trade-offs, we compared the winter energy-depletion patterns among 13 wild populations of juvenile Atlantic salmon (Salmo salar L.) along a latitudinal gradient (58–70°N) and performed common-environment experiments of energy-state-dependent feeding. In the wild, winter lipid-depletion rates were lower for northern than for southern populations. The variation in spring lipid levels among the population was lower than autumn variation, with storage lipid levels clustered close to critical limits for survival. In semi-natural stream channels with natural food supply, hatchery-reared fish originating from northern populations showed a positive scaling of feeding activity with decreasing energy levels, whereas southern populations did not. In conclusion, juvenile Atlantic salmon from northern populations defend their energy levels more strongly than fish from southern populations. Adaptive variation in feeding activity appears important for this difference. Thus, the present study shows a link between geographical patterns in storage energy trajectories and adaptive differences in state-dependent feeding motivation.     

Cooperative societies in three- dimensional space: On the origins of aggregations,flocks, and schools,with special reference to dolphins and fish

In three-dimensional open space habits, and to a lesser degree open terrestrial habitats, cooperative groupings of animals have repeatedly evolved. These cooperative systems have been observed in a wide variety of animal taxa, ranging from sea urchins to cetaceans. Various attempts have been made to relate the origins of such patterns to kin or altruism theory. An evolutionary stable strategy appears to be involved.We propose a graded series of group structures of increasing complexity by means of which three-dimensional groupings could have evolved without recourse to either group selection or even necessarily kin selection or reciprocal altruism. These structures are asocial and social aggregations, and polarized schools. Social aggregations and polarized schools allow cooperative feeding and avoidance of predation. They confer three predation-related advantages over living alone for animals in open environments: (1) the dilution effect of large prey numbers relative to those of predators, (2) the encounter effect, which provides some protection from searching predators, and (3) the confusion effect by means of which visual tracking by a predator is confounded. We suggest that the gaze stabilization system of the visual system is involved in the most advanced version of the confusion effect.In polarized schools members sense and react to each other, forming a sensory integration system (SIS). This system allows detection and transmission of information across a school, flock, or herd in three dimensions. Because members watch beyond their immediate neighbors the transmission of such group reactions can greatly exceed the reaction speed of individual members, or any predator. Because the confusion effect and the SIS depend upon uniformity of behavior the polarized school is uncommonly difficult and perhaps impossible to cheat against. We perceive this as a key factor in the establishment of the evolutionarily stable strategy of schooling.Polarized schools and aggregations are considered as the extremes of a behavioral continuum. Because in daytime the polarized school is a safer place to be and because the aggregation allows more freedom of movement for such activities as food finding, groups in open space oscillate between the these extremes during varying levels of predation.The social complexity of fish schools seems modest whereas dolphin schools show the complexities of fairly typical mammalian organization. Occupancy of open space by both oceanic dolphins and schooling fish seems to have fostered promiscuous mating. In both open water fish and mammals elements of a cooperative disposition occur, which involves both cooperation and suppression of some aspects of individuality. Such dispositional elements allow the automatic support of a cooperative society. Dolphin schools, which during daytime rest or danger react like fish schools, express typical mammalian organization at other times. Dolphin echolocation has probably allowed the expression of mammalian behavior patterns at sea because it confers a major advantage over shark predators. The expression of mammalian social complexity may have required both kin and reciprocal altruistic patterns in different species.     

Dispersal in Kin Coalition Throughout the Non‐Breeding Season to Facilitate Fine‐Scale Genetic Structure in the Breeding Season: Evidence From a Small Passerine

Evidence shows that social cooperation among kin may evolve even in birds with extensive dispersal. In such cases, maintaining kinship during dispersal is essential to the subsequent expression of kin cooperation. This hypothesis has not been examined for most bird species. We addressed it in the ground tit (Parus humilis), a passerine where kin frequently interact in terms of cooperative polygamy and extra‐pair mating despite fast annual turnover of the breeding population. Pedigree and genotype data showed that while groups varied in composition throughout the non‐breeding season due to continual individual emigration and immigration, they always contained kin coalitions consisting of either local or immigrant individuals of different age and sexes. The first‐order kin coalitions, according to the information from local individuals, stemmed from single‐family lineages (siblings and their parents), and the lower‐order ones from neighbouring, related family lineages that merged after fledging. It was probable that immigrants had formed kin coalitions in similar ways before dispersing. Groups broke up in the breeding season. Pairing between unrelated individuals from different coalitions within a group was more likely, whereas related individuals from the same coalition tended to nest near each other. The resulting fine‐scale population genetic structure is expected to facilitate breeding interactions among kin. Our findings give clues to understanding the evolution of social cooperation in relation to dispersal.     

Multiple paternity and kin recognition mechanisms in a guppy population

Help directed toward kin (nepotism) is an important example of social behaviour. Such helping behaviour requires a mechanism to distinguish kin from nonkin. The prevailing kin recognition hypothesis is that when familiarity is a reliable cue of relatedness, other mechanisms of recognition will not evolve. However, when familiarity is an unreliable cue of relatedness, kin recognition by phenotype matching is instead predicted to evolve. Here we use genetic markers to show that guppies (Poecilia reticulata) from a population in a tributary of the Paria River in Trinidad are characterized by a high degree of multiple mating with 95% of broods having more than one sire and some dams having offspring sired by six males. These levels of multiple mating are the highest reported among live-bearing fishes. The mean relatedness of brood-mates was 0.36 (as compared to 0.5 for full-siblings). Therefore, familiarity does not seem to be a reliable mechanism to assess full-sibling relatedness. Using two-choice behavioural trials, we found that juveniles from this population use both phenotype matching and familiarity to distinguish kin from nonkin. However, we did not find strong evidence that the guppies use these mechanisms to form shoals of related individuals as adults, which is similar to results from other guppy populations in Trinidad. The use of both familiarity and phenotype matching is discussed in the context of the Paria River guppy population's mating system and ecology. Overall, these data provide support for the kin recognition hypothesis and increase our understanding of the evolution of kin recognition systems.     

Social structure in migrating humpback whales (Megaptera novaeangliae)

Although largely solitary, humpback whales exhibit a number of behaviours where individuals co-operate with one another, for example during bubble net feeding. Such cases could be due to reciprocal altruism brought on by exceptional circumstances, for example the presence of abundant shoaling fish. An alternative explanation is that these behaviours have evolved through kin selection. With little restriction to either communication or movement, diffuse groups of relatives could maintain some form of social organization without the need to travel in tight-nit units. To try to distinguish between these hypotheses, we took advantage of the fact that migrating humpback whales often swim together in small groups. If kin selection is important in humpback whale biology, these groups should be enriched for relatives. Consequently, we analysed biopsy samples from 57 groups of humpback whales migrating off Eastern Australia in 1992. A total of 142 whales were screened for eight microsatellite markers. Mitochondrial DNA sequences (371 bp) were also used to verify and assist kinship identification. Our data add support to the notion that mothers travel with their offspring for the first year of the calf's life. However, beyond the presence of mother-calf/yearling pairs, no obvious relatedness pattern was found among whales sampled either in the same pod or on the same day. Levels of relatedness did not vary between migratory phases (towards or away from the breeding ground), nor between the two sexes considered either overall or in the north or south migrations separately. These findings suggest that, if any social organization does exist, it is formed transiently when needed rather than being a constant feature of the population, and hence is more likely based on reciprocal altruism than kin selection.     

Kin structure and shoal composition dynamics in the guppy, Poecilia reticulata

Although kin associations between fish can develop in the laboratory, the importance of kin structure in natural social groups remains uncertain. Guppies ( Poecilia reticulata ) possess many behavioural and life-history traits that promote kin structure, and so constitute ideal candidates for testing its general significance amongst fish. We collected 25 adult only shoals from ∼150 m stretches along two Trinidadian rivers. The 272 sampled fish were genotyped from a pool of seven hypervariable microsatellite loci. Although mark-recapture experiments have previously detected male-biased dispersal, which is predicted from the guppy mating system and which may have important implications for population differentiation, we found no sex-biases in dispersal between shoals. Because sex-biased dispersal was not evident, males and females were pooled in analyses of kin structure. Relatedness levels within each shoal did not differ significantly from zero, indicating that kin selection does not contribute to gross structure. Instead, our data is more consistent with the hypothesis that individual-level selection underlies shoal composition dynamics. These dynamics have important implications for the evolution of cooperative behaviour in guppies.     

Strategies for determining kinship in wild populations using genetic data

Knowledge of kin relationships between members of wild animal populations has broad application in ecology and evolution research by allowing the investigation of dispersal dynamics, mating systems, inbreeding avoidance, kin recognition, and kin selection as well as aiding the management of endangered populations. However, the assessment of kinship among members of wild animal populations is difficult in the absence of detailed multigenerational pedigrees. Here, we first review the distinction between genetic relatedness and kinship derived from pedigrees and how this makes the identification of kin using genetic data inherently challenging. We then describe useful approaches to kinship classification, such as parentage analysis and sibship reconstruction, and explain how the combined use of marker systems with biparental and uniparental inheritance, demographic information, likelihood analyses, relatedness coefficients, and estimation of misclassification rates can yield reliable classifications of kinship in groups with complex kin structures. We outline alternative approaches for cases in which explicit knowledge of dyadic kinship is not necessary, but indirect inferences about kinship on a group‐ or population‐wide scale suffice, such as whether more highly related dyads are in closer spatial proximity. Although analysis of highly variable microsatellite loci is still the dominant approach for studies on wild populations, we describe how the long‐awaited use of large‐scale single‐nucleotide polymorphism and sequencing data derived from noninvasive low‐quality samples may eventually lead to highly accurate assessments of varying degrees of kinship in wild populations.     

First record of pughead deformity in redear sunfish Lepomis microlophus (Günther, 1859)

The first record of pughead deformity in redear sunfish Lepomis microlophus is presented based on a single specimen captured from a wild population in a small Oklahoma reservoir. The pugheaded specimen was compared to normal fish from the same population. The pugheaded fish had slightly poorer body condition, although total length was comparable to normal individuals of the same age. Poorer condition may have resulted from difficulty feeding due to incomplete mouth closure and restricted gape caused by severe deformity of the anterior neurocranium and upper jaw. Extreme drought conditions leading to deteriorated water quality during early development may have resulted in the deformity of the redear sunfish. The incidence rate of pugheadedness in this redear sunfish population was below 1%, comparable to rates reported in other wild freshwater fish populations.     

Emergence of Oblong School Shape: Models and Empirical Data of Fish

The main benefit of the oblong shape of schools of fish is supposed to be the protection against predation. Models of self‐organised travelling groups have shown that this shape may arise as a side effect of the avoidance of collisions with group members. These models were developed for schools of fish in open water, whereas the oblong shape of schools of real fish has mostly been observed in schools in tanks. Therefore, it is not known how school shape in a tank originates neither in models nor in real fish. To find out what causes this shape, we use the combination of a theoretical and an empirical study. We test the predictions produced by our earlier models regarding the effect of school size on the school shape both in a model of self‐organised schooling in a tank and empirically. Empirically, we study the 3D positions of all individuals in the schools of 10–60 real mullets (Chelon labrosus). We calculate for each individual its distance to its nearest neighbour and its velocity and we measure per school its length and width. The relation between school shape and size in the model and in the real mullets supports our prediction and thus supports the hypothesis that school shape may be emergent from the avoidance of collisions during coordinated travelling.     

Growth and social interactions of wild and sea-ranched brown trout and their hybrids

A laboratory study of the social behaviour and growth performance of juvenile brown trout Salmo trutta of wild and sea-ranched origin and their crosses, indicated that the social behaviour of wild and sea-ranched fish differed. Male and female parents seemed to have a different impact on the juveniles. The category having wild mother and sea-ranched father were less aggressive, less active in general, but active in feeding, and therefore had higher growth rates. This pattern arose despite that the feeding rate and the motivation to first get a food item when food was provided did not differ between the groups of fish. Wild fish tended to be most aggressive. If sea-ranched and wild fish have different intrinsic (genetically based) 'life styles', the crosses between wild and sea-ranched fish indicate that there is likelihood for an introgression of genes adapted to hatchery environment into the genetics of wild conspecifics. This is particularly serious when hatchery-reared fish invades wild populations over many years.     

PCB contamination of the common barbel,Barbus barbus (pisces,cyprinidae), in the River Meuse in relation to hepatic monooxygenase activity and ultrastructural liver change

To evaluate the impact of PCBs on a wild population of a regressing fish species, we have measured the levels of these toxicants in common barbel (Barbus barbus) from the Belgian part of the river Meuse. We have expressed these levels in terms of the most suitable composition of commercial PCB mixture (Aroclor 1254 and 1260 20/80; v/v), and related them to hepatic xenobiotic-metabolising enzyme activities and to hepatocyte ultrastructure.PCB concentrations in barbel organs were extremely high, with no statistical difference between the two sexes at equal weight. In liver, muscle, and gonads, PCB concentrations increased significantly with age, reaching 20 g g^–1 DW in 12- to 15-year-old individuals. The activities of the monooxygenases (ethoxyresorufin o-deethylase, EROD, and ethoxycoumarin o-deethylase, ECOD) and the cytochrome P-450 content correlated closely with the PCB concentration in fish liver. Moreover, wild fish presented a markedly altered liver ultrastructure, as compared to controls; the rough endoplasmic reticulum (RER) was particularly abundant and the mitochondrial membranes were altered. PCBs thus alter essential metabolic functions in wild barbels, which constitute a highly sensitive tool for biomonitoring wild fish populations. While the effects of PCBs on metabolic pathways may combine additively or synergistically with effects of other xenobiotics, it has been demonstrated elsewhere that they decrease successful reproduction. Their chronic negative effects have thus played a role in reducing barbel populations in highly polluted areas.     

A test of alternative hypotheses for kin recognition in cannibalistic tiger salamanders

The function of kin recognition is controversial. We investigatedthe adaptive significance of kin discrimination in cannibalistictiger salamander larvae, Ambystoma tigrinum. Previous laboratoryexperiments show that cannibals preferentially consume lessrelated individuals. We hypothesized that this example of kinrecognition (1) is a laboratory artifact, (2) is a by-productof sibship-specific variation in escape responses, because cannibalsfrom families with rapid responses may be more likely to cannibalize slowlyescaping non-kin, (3) is an epiphenomenon of species recognition,(4) functions in disease avoidance, because kin may be moreinfectious than non-kin, or (5) is favored by kin selection.We evaluated these five hypotheses by using laboratory and fieldexperiments to test specific predictions made by each hypothesis.We rejected hypotheses 1-4 above because (1) kin recognitionwas expressed in the wild, (2) escape responses did not reliablypredict whether a cannibal would ingest kin or non-kin, (3)kin recognition was not most pronounced in populations wheretiger salamanders co-occur with other species of salamanders,and (4) non-kin prey were more likely than kin to transmit pathogensto cannibals. However, we established that the necessary conditionfor kin selection, Hamilton's rule, was met. Thus, our resultsimplicate kin selection as the overriding reason that cannibalistictiger salamanders discriminate kin.     

Evidence for female-biased dispersal in the protandrous hermaphroditic Asian Seabass, Lates calcarifer

Movement of individuals influences individual reproductive success, fitness, genetic diversity and relationships among individuals within populations and gene exchange among populations. Competition between males or females for mating opportunities and/or local resources predicts a female bias in taxa with monogamous mating systems and a male-biased dispersal in polygynous species. In birds and mammals, the patterns of dispersal between sexes are well explored, while dispersal patterns in protandrous hermaphroditic fish species have not been studied. We collected 549 adult individuals of Asian seabass (Lates calcarifer) from four locations in the South China Sea. To assess the difference in patterns of dispersal between sexes, we genotyped all individuals with 18 microsatellites. Significant genetic differentiation was detected among and within sampling locations. The parameters of population structure (F(ST)), relatedness (r) and the mean assignment index (mAIC), in combination with data on tagging-recapture, supplied strong evidences for female-biased dispersal in the Asian seabass. This result contradicts our initial hypothesis of no sex difference in dispersal. We suggest that inbreeding avoidance of females, female mate choice under the condition of low mate competition among males, and male resource competition create a female-biased dispersal. The bigger body size of females may be a cause of the female-biased movement. Studies of dispersal using data from DNA markers and tagging-recapture in hermaphroditic fish species could enhance our understanding of patterns of dispersal in fish.     

Inbreeding avoidance influences the viability of reintroduced populations of African wild dogs (Lycaon pictus)

The conservation of many fragmented and small populations of endangered African wild dogs (Lycaon pictus) relies on understanding the natural processes affecting genetic diversity, demographics, and future viability. We used extensive behavioural, life-history, and genetic data from reintroduced African wild dogs in South Africa to (1) test for inbreeding avoidance via mate selection and (2) model the potential consequences of avoidance on population persistence. Results suggested that wild dogs avoided mating with kin. Inbreeding was rare in natal packs, after reproductive vacancies, and between sibling cohorts (observed on 0.8%, 12.5%, and 3.8% of occasions, respectively). Only one of the six (16.7%) breeding pairs confirmed as third-order (or closer) kin consisted of animals that were familiar with each other, while no other paired individuals had any prior association. Computer-simulated populations allowed to experience inbreeding had only a 1.6% probability of extinction within 100 years, whereas all populations avoiding incestuous matings became extinct due to the absence of unrelated mates. Populations that avoided mating with first-order relatives became extinct after 63 years compared with persistence of 37 and 19 years for those also prevented from second-order and third-order matings, respectively. Although stronger inbreeding avoidance maintains significantly more genetic variation, our results demonstrate the potentially severe demographic impacts of reduced numbers of suitable mates on the future viability of small, isolated wild dog populations. The rapid rate of population decline suggests that extinction may occur before inbreeding depression is observed.     

Assessing genetic diversity of populations of topmouth culter (Culter alburnus) in China using AFLP markers

Genetic diversity of five wild populations and a cultured population of topmouth culter (Culter alburnus) was investigated using amplified fragment length polymorphism (AFLP). A total of 373 reproducible bands amplified with seven AFLP primer combinations were obtained from 163 fish. The percentage of polymorphic loci ranged widely from 37.0% to 69.2% within distinct populations. The cultured population appeared to have a lower level of polymorphism (37.0%), gene diversity (0.121 ± 0.188) and Shannon's Information index (0.183 ± 0.263) than the wild populations. Analysis of molecular variance (AMOVA) revealed that average F_ST value overall loci was 0.2671, and the percentage of variation within population (73.29%) was larger than among populations (26.71%) (P < 0.01). The six populations were clustered into two major clades with UPGMA. The results from analysis of population pairwise gene flow indicated moderate gene flow among populations. Our study indicated that the genetic diversity of the cultured population was reduced compared with the wild populations. Geographic isolation, habitat, and artificial selection all may have played important roles in population differentiation. The information may be beneficial to future broodstock selection and defining conservation management for the different populations of topmouth culter.