New amino-dithiaphospholanes and phosphoramidodithioites and their rhodium and iridium complexes

New sulfur derivatives of phosphoramidite ligands were synthesized and the impact of the sulfur unit on the spectroscopic properties of their rhodium and iridium complexes was investigated. The new ligands Bn₂NPSCH₂CH₂S^a(P-S^a) (Bn = benzyl, 4), Bn₂NPSCHCHS^a(CH₂)₃C^aH₂(P-S^a)(C^a-S^a) (6) and Bn₂NP(4-XC₆H₄OMe)₂ (X = S, 7a; X = O, 7b) were converted to the rhodium and iridium complexes trans-[Rh(CO)Cl(L)₂] (L = 4, 6, 7), [RhCl(COD)(L)] (L = 4, 6, 7), [IrCl(COD)(7a)] and [IrCl₂Cp∗(6)]. For comparison, some phosphoramidite complexes of these formulations also were synthesized. The new metal complexes were spectroscopically analyzed. For the carbonyl complexes, the ν_CO IR stretching frequencies were lower than for the corresponding phosphite and phosphoramidite ligands. The ¹J_PRh coupling constants for the rhodium complexes with the new ligands were also smaller than for the respective phosphoramidite and phosphite complexes. Finally, the ¹J_PSe coupling constants of the selenides of the new ligands were lower than those of the phosphoramidite ligands but higher than for PPh₃. The spectroscopic data reveal that the new thio ligands 4, 6 and 7a are more electron donating than phosphites and phosphoramidites but less electron donating than PPh₃.     

Sodium and potassium fluxes and compartmentation in roots of atriplex and oat

K⁺ and Na⁺ fluxes and ion content have been studied in roots of Atriplex nummularia Lindl. and Avena sativa L. cv Goodfield grown in 3 millimolar K⁺ with or without 3 or 50 millimolar NaCl. Compartmental analysis was carried out with entire root systems under steady-state conditions.

Increasing ambient Na⁺ concentrations from 0 to 50 millimolar altered K⁺, in Atriplex, as follows: slightly decreased the cytoplasmic content (Q_c), the vacuolar content (Q_v), and the plasma membrane influx and efflux. Xylem transport for K⁺ decreased by 63% in Atriplex. For oat roots, similar increases in Na⁺ altered K⁺ parameters as follows: plasma membrane influx and efflux decreased by about 80%. Q_c decreased by 65%, and xylem transport decreased by 91%. No change, however, was observed in Q_v for K⁺. Increasing ambient Na⁺ resulted in higher (3 to 5-fold) Na⁺ fluxes across the plasma membrane and in Q_c of both species. In Atriplex, Na⁺ fluxes across the tonoplast and Q_v increased as external Na⁺ was increased. In oat, however, no significant change was observed in Na⁺ flux across the tonoplast or in Q_v as external Na⁺ was increased. In oat roots, Na⁺ reduced K⁺ uptake markedly; in Atriplex, this was not as pronounced. However, even at high Na⁺ levels, the influx transport system at the plasma membrane of both species preferred K⁺ over Na⁺.

Based upon the Ussing-Teorell equation, it was concluded that active inward transport of K⁺ occurred across the plasma membrane, and passive movement of K⁺ occurred across the tonoplast in both species. Na⁺, in oat roots, was actively pumped out of the cytoplasm to the exterior, whereas, in Atriplex, Na⁺ was passively distributed between the free space, cytoplasm, and vacuole.

     

Intermolecular and intramolecular transposition and transposition immunity in Tn3 and Tn2660

Summary Intermolecular transposition of Tn2660 into pCR1 was measured at 30°C in recA ^– and recA ⁺ hosts as between 2.6 and 5.5x10^–3, a similar value to that previously found for Tn3. No cointegrate structures were found under conditions where 10⁴ transposition events occurred. Immunity to intermolecular transposition of Tn2660, similar to that found for Tn3 was demonstrated by showing that the above transposition frequency was reduced by a factor of between 10^–3 and 10^–4 when a mutant Tn2660 (resulting in the synthesis of a temperaturesensitive -lactamase) was present in the recipient plasmid. Intramolecular transposition of Tn3 was found to occur under the same conditions as previously demonstrated for Tn2660 giving rise to similar end products, in which the newly introduced Tn3 is oriented inversely to the resident Tn3 and the DNA sequence between the two transposons has been inverted. Thus, in all respects functional identity of the transposition activities of Tn3 and Tn2660 is shown, thereby identifying characteristics of intramolecular transposition that are not readily accommodated by current models of transposition.     

Antibacterial and Antifugal Mono- and Di-substituted Symmetrical and Unsymmetrical Triazine-derived Schiff-bases and their Transition Metal Complexes

A new series of antibacterial and antifungal triazine-derived mono- and di-substituted (symmetrical and unsymmetrical) Schiff-bases and their cobalt(II), copper(II), nickel(II) and zinc(II) metal complexes have been synthesized and characterized by their elemental analyses, molar conductances, magnetic moments and IR and electronic spectral measurements. IR spectra indicated the ligands to act as tridentate towards divalent metal ions via a trazine-N, the azomethine-N and, indole-NH and deprotonated-O of salicylaldehyde. The magnetic moments and electronic spectral data suggest octahedral geometry for the Co(II), Ni(II) and Zn(II)complexes and square-pyramid for Cu(II) complexes. NMR spectral data of the ligands and their diamagnetic zinc(II) complexes well-define their proposed structures/geometries. Elemental analyses data of the ligands and metal complexes agree with their proposed structures/geometries. The synthesized ligands, along with their metal complexes were screened for their antibacterial activity against Escherichia coli, Bacillus subtillis, Shigella flexneri, Staphylococcus aureus, Pseudomonas aeruginosa and Salmonella typhi and for antifungal activity against Trichophyton longifusus, Candida albicans, Aspergillus flavus, Microsporum canis, Fusarium solani and Candida glaberata. The results of these studies show the metal complexes to be more antibacterial/antifungal against two or more species as compared to the uncomplexed Schiff-base ligands.     

Kinetics and thermodynamics of peroxidase- and laccase-catalyzed oxidation of N-substituted phenothiazines and phenoxazines

N -substituted phenothiazines (PTs) and phenoxazines (POs) catalyzed by fungal Coprinus cinereus peroxidase and Polyporus pinsitus laccase were investigated at pH 4–10. In the case of peroxidase, an apparent bimolecular rate constant (expressed as k _cat/K _m) varied from 1 ×10⁷M⁻¹s⁻¹to 2.6×10⁸M⁻¹s⁻¹ at pH 7.0. The constants for PO oxidation were higher in comparison to PT. pH dependence revealed two or three ionizable groups with pK _a values of 4.9–5.7 and 7.7–9.7 that significantly affected the activity of peroxidase. Single-turnover experiments showed that the limiting step of PT oxidation was reduction of compound II and second-order rate constants were obtained which were consistent with the constants at steady-state conditions. Laccase-catalyzed PT and PO oxidation rates were lower; apparent bimolecular rate constants varied from 1.8×10⁵M⁻¹s⁻¹ to 2.0×10⁷M⁻¹s⁻¹ at pH 5.3. PO constants were higher in comparison to PT, as was the case with peroxidase. The dependence of the apparent bimolecular constants of compound II or copper type 1 reduction, in the case of peroxidase or laccase, respectively, was analyzed in the framework of the Marcus outer-sphere electron-transfer theory. Peroxidase-catalyzed reactions with PT, as well as PO, fitted the same hyperbolic dependence with a maximal oxidation rate of 1.6×10⁸M⁻¹s⁻¹ and a reorganization energy of 0.30 eV. The respective parameters for laccase were 5.0×10⁷M⁻¹s⁻¹ and 0.29 eV. Received: 20 September 1999 / Accepted: 24 February 2000     

Prostaglandin and thromboxane production by human and guinea-pig macrophages and leucocytes

The ability of partially purified human and guinea-pig haematogenous cell populations, when cultured in vitro, to metabolise arachidonic acid (AA) has been studied. Supernatants from 24 hour cell culture have been subjected to analysis for products of AA metabolism by gas chromatography with electron-capture detection.The cell types studied were human peripheral blood monocytes (both glass adherent and non-adherent), neutrophils, eosinophils and leukemic leucocytes; thoracic duct lymphocytes and lung alveolar macrophages. From the guinea-pig, induced and non-induced macrophage or neutrophil enriched peritoneal exudate populations, lymph node cells, peritoneal eosinophils and peripheral blood platelets were examined. Supernatants were assayed for the presence of PGE₂, PGD₂, PGF_2α, TXB₂ and 6-keto-PGF_1α. In all types studied PGE₂ and TXB₂ were the major products formed. The identification of PGE₂ and TXB₂ was confirmed by GC/MS with multiple ion monitoring.The results have been compared with other reports and their possible significance discussed in relation to the proposed role of prostaglandins as mediators and modulators in immunopathology.     

NMR and FT-IR conformational studies of 8-substituted guanine nucleosides and nucleotides and their metal adducts and cancer

NMR and FT-IR Studies of the conformational changes of guanosine and guanosine-5′-monophosphate upon substitution of the H8 of guanine by a heavy, large atom, such as bromine, are presented. The conformational forms, syn, anti, C2′-endo and C3′-endo and gg, gt and tg rotamers of the above molecules are compared to those of their metal (Mg²⁺ and P^t2+) adducts, where the metal is fixed to the N7 nitrogen atom of guanine. The antitumor activity of cisplatin is discussed with relation to the conformational form and the effect of cisplatin is compared to the effects of the Mg²⁺ ion and carcinogens.     

Mechanical asymmetry during articulation of tibial and femoral cartilages: Local and overall compressive and shear deformation and properties

During knee movement, femoral cartilage articulates against cartilage from the tibial plateau, and the resulting mechanical behavior is yet to be fully characterized. The objectives of this study were to determine (1) the overall and depth-varying axial and shear strains and (2) the associated moduli, of femoral and tibial cartilages during the compression and shearing of apposing tibial and femoral samples. Osteochondral blocks from human femoral condyles (FCs) characterized as normal and donor-matched lateral tibial plateau (TP) were apposed, compressed 13%, and subjected to relative lateral motion. When surfaces began to slide, axial (?E_zz) and shear (E_xz) strains and compressive (E) and shear (G) moduli, overall and as a function of depth, were determined for femoral and tibial cartilages. Tibial ?E_zz was ～2-fold greater than FC ?E_zz near the surface (0.38 versus 0.22) and overall (0.16 versus 0.07). Near the surface, E_xz of TP was 8-fold higher than that of FC (0.41 versus 0.05), while overall E_xz was 4-fold higher (0.09 versus 0.02). For TP and FC, ?E_zz and E_xz were greatest near the surface and decreased monotonically with depth. E for FC was 1.7-fold greater than TP, both near the surface (0.40 versus 0.24 MPa) and overall (0.76 versus 0.47 MPa). Similarly, G was 7-fold greater for FC (0.22 MPa) than TP near the surface (0.03 MPa) and 3-fold higher for FC (0.38 MPa) than TP (0.13 MPa) overall. These results indicate that tibial cartilage deforms and strains more axially and in shear than the apposing femoral cartilage during tibial–femoral articulation, reflecting their respective moduli.     

Kinetics and Energetics of Biomolecular Folding and Binding

The ability of biomolecules to fold and to bind to other molecules is fundamental to virtually every living process. Advanced experimental techniques can now reveal how single biomolecules fold or bind against mechanical force, with the force serving as both the regulator and the probe of folding and binding transitions. Here, we present analytical expressions suitable for fitting the major experimental outputs from such experiments to enable their analysis and interpretation. The fit yields the key determinants of the folding and binding processes: the intrinsic on-rate and the location and height of the activation barrier.Dynamic processes in living cells are regulated through conformational changes in biomolecules—their folding into a particular shape or binding to selected partners. The ability of biomolecules to fold and to bind enables them to act as switches, assembly factors, pumps, or force- and displacement-generating motors (1). Folding and binding transitions are often hindered by a free energy barrier. Overcoming the barrier requires energy-demanding rearrangements such as displacing water from the sites of native contacts and breaking nonnative electrostatic contacts, as well as loss of configurational entropy. Once the barrier is crossed, the folded and bound states are stabilized by short-range interactions: hydrogen bonds, favorable hydrophobic effects, and electrostatic and van der Waals attractions (2).Mechanistic information about folding and binding processes is detailed in the folding and binding trajectories of individual molecules: observing an ensemble of molecules may obscure the inherent heterogeneity of these processes. Single-molecule trajectories can be induced, and monitored, by applying force to unfold/unbind a molecule and then relaxing the force until folding or binding is observed (3–5) (Fig. 1). Varying the force relaxation rate shifts the range of forces at which folding or binding occurs, thus broadening the explorable spectrum of molecular responses to force and revealing conformational changes that are otherwise too fast to detect. The measured force-dependent kinetics elucidates the role of force in physiological processes (6) and provides ways to control the timescales, and even the fate, of these processes. The force-dependent data also provides a route to understanding folding and binding in the absence of force—by extrapolating the data to zero force via a fit to a theory.Open in a separate windowFigure 1Schematic of the output from a force-relaxation experiment. The applied force is continuously relaxed from the initial value F₀ until the biomolecule folds or binds, as signified by a sharp increase in the measured force. From multiple repeats of this experiment, distributions of the folding or binding forces are collected (inset). Fitting the force distributions with the derived analytical expression yields the key parameters that determine the kinetics and energetics of folding or binding.In this letter, we derive an analytical expression for the distribution of transition forces, the major output of force-relaxation experiments that probe folding and binding processes. The expression extracts the key determinants of these processes: the on-rate and activation barrier in the absence of force. The theory is first developed in the context of biomolecular folding, and is then extended to cover the binding of a ligand tethered to a receptor. In contrast to unfolding and unbinding, the reverse processes of folding and binding require a theory that accounts for the compliance of the unfolded state, as well as the effect of the tether, to recover the true kinetic parameters of the biomolecule of interest.In a force-relaxation experiment, an unfolded biomolecule or unbound ligand-receptor complex is subject to a stretching force, which is decreased from the initial value F₀ as the pulling device approaches the sample at speed V until a folding or binding transition is observed (Fig. 1) (3–5). Define S(t) as the probability that the molecule has not yet escaped from the unfolded (implied: or unbound) state at time t. When escape is limited by one dominant barrier, S(t) follows the first-order rate equationS˙(t)≡dS(t)dt=−k←(F(t))S(t),where k_←(F(t)) is the on-rate at force F at time t. Because, prior to the transition, the applied force decreases monotonically with time, the distribution of transition forces, p(F), is related to S(t) through p(F)dF=S˙(t)dt, yieldingp(F)=−k←(F)F˙(F)e−∫F0Fk←(F′)F˙(F′)dF′.(1)Here F˙(F)≡dF(t)/dt<0 is the force relaxation rate. The proper normalization of p(F) is readily confirmed by integrating Eq. 1 from the initial force F₀ to negative infinity, the latter accounting for transitions that do not occur by the end of the experiment. Note that the expression for the distribution of folding/binding forces in Eq. 1 differs from its analog for the unfolding process (7) by the limits of integration and a negative sign, reflecting the property of a relaxation experiment to decrease the survival probability S(t) by decreasing the force. Converting the formal expression in Eq. 1 into a form suitable for fitting experimental data requires establishing functional forms for k_←(F) and F˙(F) and analytically solving the integral. These steps are accomplished below.The on-rate k_←(F) is computed by treating the conformational dynamics of the molecule as a random walk on the combined free energy profile G(x,t) = G₀(x) + G_pull(x,t) along the molecular extension x. Here G₀(x) is the intrinsic molecular potential and G_pull(x,t) is the potential of the pulling device. When G(x,t) features a high barrier on the scale of k_BT (k_B is the Boltzmann constant and T the temperature), the dynamics can be treated as diffusive. The unfolded region of the intrinsic potential for a folding process, unlike that for a barrierless process (8), can be captured by the functionG0(x)=ΔG‡ν1−ν(xx‡)11−ν−ΔG‡ν(xx‡),which has a sharp (if ν = 1/2, Fig. 2, inset) or smooth (if ν = 2/3) barrier of height ΔG^‡ and location x^‡. The potential of a pulling device of stiffness κ_S is G_pull(x,t) = κ_S/2(X₀ – Vt – x)² with an initial minimum at X₀ (corresponding to F₀). Applying Kramers formalism (9) to the combined potential G(x,t), we establish the analytical form of the on-rate at force F(t),k←(F)=k0(1+κSκU(F))1ν−12(1+νFx‡ΔG‡)1ν−1×eβΔG‡[1−(1+κSκU(F))2ν1−ν−1(1+νFx‡ΔG‡)1ν],where k₀ is the intrinsic on-rate, β ≡ (k_BT)⁻¹, andκU(F)=ν(1−ν)2ΔG‡x‡2(1+νFx‡ΔG‡)2−1νis the stiffness of the unfolded biomolecule under force F (see the Supporting Material for details on all derivations). The full nonlinear form of G_pull(x,t) was necessary in the derivation because, in contrast to the typically stiff folded state, the unfolded state may be soft (to be exact, 1/2κ_S x^‡2(F) << k_BT may not be satisfied) and thus easily deformed by the pulling device. Because of this deformation, the folding transition faces an extra contribution (regulated by the ratio κ_S/κ_U(F)) to the barrier height, typically negligible for unfolding, that decreases the on-rate in addition to the applied force F.Open in a separate windowFigure 2Contributions to the free energy profile for folding (inset) and binding (main figure). The derived expression (Eq. 2) extracts the on-rate and the location and height of the activation barrier to folding. When applied to binding data, the expression extracts the parameters of the ligand-tether-receptor (LTR) potential G˜0 (x); the proposed algorithm (Eqs. 3 and 4) removes the contribution of the tether potential G_teth(x) to recover the parameters of the intrinsic ligand-receptor (LR) potential G₀(x).The last piece required for Eq. 1, the loading rate F˙(F), is computed as the time derivative of the force F(t) on the unfolded molecule at its most probable extension at time t:F˙(F)=−κSV1+κS/κU(F).Finally, we realize that the integral in Eq. 1 can be solved analytically exactly, both for ν = 1/2 and ν = 2/3, resulting in the analytical expression for the distribution of folding forces:p(F)=k←(F)|F˙(F)|e−k←(F)β|F˙(F)|x‡(1+κSκU(F))νν−1(1+νFx‡ΔG‡)1−1ν.(2)Equation 2 can be readily applied to (normalized) histograms from force-relaxation experiments to extract the parameters of the intrinsic kinetics and energetics of folding. Being exact for ν = 1/2 and ν = 2/3, Eq. 2 is also an accurate approximation for any ν in the interval 1/2 < ν < 2/3 as long as κ_S ≲ κ_U (F) (see Fig. S1 in the Supporting Material). For simplicity, in Eq. 2 we have omitted the term containing F₀ as negligible if F₀ is large enough to prevent folding events.The solution in Eq. 2 reveals properties of the distribution of folding forces that distinguish it from its unfolding counterpart (7):

• 1.The distribution has a positive skew (Fig. 3), as intuitively expected: the rare folding events occur at high forces when the barrier is still high.Open in a separate windowFigure 3Force histograms from folding (left) and binding (right) simulations at several values of the force-relaxation speed (in nanometers per second, indicated at each histogram). Fitting the histograms with the analytical expression in Eq. 2 (lines) recovers the on-rate and activation barrier for folding or binding (2.Increasing the relaxation speed shifts the distribution to lower forces (Fig. 3): faster force relaxation leaves less time for thermal fluctuations to push the system over a high barrier, causing transitions to occur later (i.e., at lower forces), when the barrier is lower.
• 3.The stiffness κ_S and speed V enter Eq. 2 separately, providing independent routes to control the range of folding forces and thus enhance the robustness of a fit.

The application of the above framework to binding experiments on a ligand and receptor connected by a tether (3) involves an additional step—decoupling the effect of the tether—to reconstruct the parameters of ligand-receptor binding. Indeed, the parameters extracted from a fit of experimental histograms to Eq. 2 characterize the ligand-tether-receptor (LTR) potential (k˜0, x˜‡, ΔG˜‡, ν) (Fig. 2). The parameters of the natural ligand-receptor (LR) potential (k₀, x^‡, ΔG^‡) can be recovered using three characteristics of the tether: contour length L; persistence length p; and extension Δℓ of the tether along the direction of the force in the LTR transition state. The values of L and p can be determined from the force-extension curve of the tether (10); these define the tether potential G_teth(x) (Fig. 2). The value of Δℓ can be found from an unbinding experiment (7) on LTR and the geometry of the tether attachment points (see Fig. S3). Approximating the region of the LR potential between the transition and unbound states as harmonic, with no assumptions about the shape of the potential beyond x^‡, the ligand-receptor barrier parameters are thenx‡=α−1α−2x˜‡,ΔG‡=(α−1)22(α−2)x˜‡Fteth(Δℓ+x˜‡),(3)and the intrinsic unimolecular association rate isk0≈k˜0(βΔG‡)32(βΔG˜‡)1ν−12(x˜‡x‡)2eβ(ΔG˜‡−ΔG‡).(4)Here, the force value Fteth(Δℓ+x˜‡) is extracted from the force-extension curve of the tether at extension Δℓ+x˜‡ andα=2(ΔG˜‡−Gteth(Δℓ)+Gteth(Δℓ+x˜‡))x˜‡Fteth(Δℓ+x˜‡),where G_teth(x) is the wormlike-chain potential (see Eq. S13 in the Supporting Material). Equations 3–4 confirm that a tether decreases the height and width of the barrier (see Fig. 2), thus increasing the on-rate.In Fig. 3, the developed analytical framework is applied to folding and binding force histograms from Brownian dynamics simulations at parameters similar to those in the analogous experimental and computational studies (3,5,11) (for details on simulations and fitting procedure, see the Supporting Material). For the stringency of the test, the simulations account for the wormlike-chain nature of the molecular unfolded and LTR unbound states that is not explicitly accounted for in the theory. With optimized binning (12) of the histograms and a least-squares fit, Eqs. 2–4 recover the on-rate, the location and the height of the activation barrier, and the value of ν that best captures how the kinetics scale with force (

1.Multiple relaxation speeds,

2.Folding/binding events at low forces, and

3.A large number of events at each speed.

Table 1

On-rate and the location and height of the activation barrier from the fit of simulated data to the theory in Eq. 2

Plato and Peirce on Likeness and Semblance

In his well-known essay, ??What Is a Sign???(CP 2.281, 285) Peirce uses ??likeness?? and ??resemblance?? interchangeably in his definition of icon. The synonymity of the two words has rarely, if ever, been questioned. Curiously, a locus classicus of the pair, at least in F. M. Cornford??s English translation, can be found in a late dialogue of Plato, namely, the Sophist. In this dialogue on the myth and truth of the sophists?? profession, the mysterious ??stranger??, who is most likely Socrates?? persona, makes the famous distinction between eikon (likeness) and phantasma (semblance) (236a,b). For all his broad knowledge in ancient philosophy, Peirce never mentioned this parallel; nor has any Peircean scholar identified it. There seems to be little problem with eikon as likeness, but phantasma may give rise to a puzzle which this paper will attempt to solve. Plato uses two pairs of words: what eikon is to phantasma is eikastikén (the making of likeness [235d]) to phantastikén (semblance making [236c]). In other words, icons come into being because of the act of icon-making, which is none other than indexicality. Witness what Peirce says about the relationship between photographs and the objects they represent: ??But this resemblance is due to the photographs having been produced under such circumstances that they were physically forced to correspond point by point to nature.?? (Ibid.) Thus the iconicity which links the representamen (sign) and its object is made possible not only by an interpretant, but also by idexisation. Their possible etymological and epistemological links aside, the Peircean example of photographing and the Platonic discussion of painting and sculpturing in the Sophist, clearly show the physio-pragmatic aspect of iconicity. The paper will therefore reread the Peircean iconicity by closely analysing this relatively obscure Platonic text, and by so doing restore to the text its hidden semiotic dimension.     

Morphology and development of anthers and ovules in Croton and Astraea (Euphorbiaceae)

We examined the embryological development of anthers and ovules from Astraea (A. lobata and A. praetervisa) and Croton (C. floribundus, C. fuscescens, C. glandulosus, C. lundianus, C. piptocalyx, C. urucurana and C. triqueter) focusing on features with systematic significance for the group. Some of these features are common in Euphorbiaceae including: a dicotyledonous type of anther wall formation, a secretory tapetum, a mixed origin of the outer ovule integument, an epidermal origin of the inner ovule integument, the occurrence of many archesporial cells inside the ovules and a megagametophyte of the Polygonum‐type. Other features, such as the presence of styloid crystals in the tapetum, an idioblast with a druse in the endothecium, simultaneous and successive microsporogenesis, and a functional micropylar megaspore, have not previously been reported in the family. These characters appear to distinguish Croton and Astraea from other Euphorbiaceae and possibly represents autapomorphies for the tribe Crotoneae.     

Zinc and Iron Concentration and SOD Activity in Human Semen and Seminal Plasma

The aim of the present study was to measure zinc (Zn) and iron (Fe) concentration in human semen and superoxide dismutase (SOD) activity in seminal plasma and correlate the results with sperm quality. Semen samples were obtained from men (N = 168) undergoing routine infertility evaluation. The study design included two groups based on the ejaculate parameters. Group I (n = 39) consisted of males with normal ejaculate (normozoospermia), and group II (n = 129) consisted of males with pathological spermiogram. Seminal Zn and Fe were measured in 162 samples (group I, n = 38; group II, n = 124) and SOD activity in 149 samples (group I, n = 37; group II, n = 112). Correlations were found between SOD activity and Fe and Zn concentration, and between Fe and Zn concentration. SOD activity was negatively associated with volume of semen and positively associated with rapid progressive motility, nonprogressive motility, and concentration. Negative correlation was stated between Fe concentration and normal morphology. Mean SOD activity in seminal plasma of semen from men of group I was higher than in seminal plasma of semen from men of group II. Fe concentration was higher in teratozoospermic males than in males with normal morphology of spermatozoa in group II. Our results suggest that Fe may influence spermatozoa morphology.     

Surface thermodynamic properties and chromatographic and salting-out behavior of IgA and other serum proteins

By means of contact angle determinations with two liquids, on hydrated as well as on dried protein layers, the long-range and the short-range contributions to the protein surface tensions, and from these the protein (G ₁₃₁) and the protein-ligand (G ₁₃₂) free energies of interaction in aqueous media, were determined. For human serum albumin (HSA), human IgG, and human IgA, the differences between G ₁₃₁ ^HYDRATED and G ₁₃₁ ^DRY were connected with the behavior of these proteins in low concentrations of (NH₄)₂SO₄ versus saturated (NH₄)₂SO₄ solutions. By interpolation, intermediate points are found that correlate well with the known salting-out properties of these three proteins. On the basis of the data, it is predicted that the precipitation of IgG by 1/3 saturated (NH₄)₂SO₄ is preventable, or reversible, by the admixture of 15% dimethylsulfoxide; both predictions are confirmed experimentally. From the G ₁₃₂ values found, it is shown that HSA and IgG should attach to phenyl ligands under physiological conditions, but that IgA is so hydrophilic that it only can adhere to phenyl ligands after partial dehydration brought about when admixed with 1 M (NH₄)₂SO₄. Closer analysis of the values obtained for the long-range and short-range components of the surface tensions of HSA, IgG, and IgA allow deeper insight into their functional, chemical, and physicochemical properties.     

Biomass and Lipid Production of Dinoflagellates and Raphidophytes in Indoor and Outdoor Photobioreactors

The principal fatty acids from the lipid profiles of two autochthonous dinoflagellates (Alexandrium minutum and Karlodinium veneficum) and one raphidophyte (Heterosigma akashiwo) maintained in bubble column photobioreactors under outdoor culture conditions are described for the first time. The biomass production, lipid content and lipid productivity of these three species were determined and the results compared to those obtained when the strains were cultured indoors. Under the latter condition, the biotic values did not significantly differ among species, whereas under outdoor conditions, differences in both duplication time and fatty acids content were observed. Specifically, A. minutum had higher biomass productivity (0.35 g·L^?1 day^?1), lipid productivity (80.7 mg lipid·L^?1 day^?1) and lipid concentration (252 mg lipid·L^?1) at harvest time (stationary phase) in outdoor conditions. In all three strains, the growth rate and physiological response to the light and temperature fluctuations of outdoor conditions greatly impacted the production parameters. Nonetheless, the species could be successfully grown in an outdoor photobioreactor and were of sufficient robustness to enable the establishment of long-term cultures yielding consistent biomass and lipid production.     

Synthesis and properties of cyclic gomesin and analogues

Gomesin (Gm) was the first antimicrobial peptide (AMP) isolated from the hemocytes of a spider, the Brazilian mygalomorph Acanthoscurria gomesiana. We have been studying the properties of this interesting AMP, which also displays anticancer, antimalarial, anticryptococcal and anti‐Leishmania activities. In the present study, the total syntheses of backbone‐cyclized analogues of Gm (two disulfide bonds), [Cys(Acm)^2,15]‐Gm (one disulfide bond) and [Thr^2,6,11,15,d ‐Pro⁹]‐Gm (no disulfide bonds) were accomplished, and the impact of cyclization on their properties was examined. The consequence of simultaneous deletion of pGlu¹ and Arg¹⁶‐Glu‐Arg¹⁸‐NH₂ on Gm antimicrobial activity and structure was also analyzed. The results obtained showed that the synthetic route that includes peptide backbone cyclization on resin was advantageous and that a combination of 20% DMSO/NMP, EDC/HOBt, 60 °C and conventional heating appears to be particularly suitable for backbone cyclization of bioactive peptides. The biological properties of the Gm analogues clearly revealed that the N‐terminal amino acid pGlu¹ and the amidated C‐terminal tripeptide Arg¹⁶‐Glu‐Arg¹⁸‐NH₂ play a major role in the interaction of Gm with the target membranes. Moreover, backbone cyclization practically did not affect the stability of the peptides in human serum; it also did not affect or enhanced hemolytic activity, but induced selectivity and, in some cases, discrete enhancements of antimicrobial activity and salt tolerance. Because of its high therapeutic index, easy synthesis and lower cost, the [Thr^2,6,11,15,d ‐Pro⁹]‐Gm analogue remains the best active Gm‐derived AMP developed so far; nevertheless, its elevated instability in human serum may limit its therapeutic potential. Copyright © 2012 European Peptide Society and John Wiley & Sons, Ltd.     

Nucleosomes and subnucleosomes: heterogeneity and composition

Previous studies (Varshavsky, Bakayev and Georgiev, 1976a) have shown that chromatin subunits (mononucleosomes) and their oligomers in a mild staphylococcal nuclease digest of chromatin display a heterogeneous content of histone H1. We now report that a mild staphylococcal nuclease digest of either chromatin or nuclei from mouse Ehrlich tumor cells contains mononucleosomes of three discrete kinds. The smallest mononucleosome (MN₁) contains all histones except H1 and a DNA fragment 140 base pairs (bp) long. The intermediate mononucleosome (MN₂) contains all five histones and a DNA fragment 170 bp long. The third mononucleosome (MN₃) also contains all five histones, but its DNA fragment is longer and more heterogeneous in size (180–200 bp). Most of the MN₃ particles are rapidly converted by nuclease into mononucleosomes MN₁ and MN₂ There exists, however, a relatively nuclease-resistant subpopulation of the MN₃ mononucleosomes. These 200 bp MN₁ particles contain not only histones but also nonhistone proteins, and are significantly more resistant to nuclease than the bulk of MN₃ particles and the smaller mononucleosomes MN₁ and MN₂.There are eight major kinds of staphylococcal nuclease-produced soluble subnucleosomes (SN). The SN₁ is a set of naked double-stranded DNA fragments ～20 bp long. The SN₂ is a complex of a specific basic nonhistone protein (molecular weight ～16,000 daltons) and a DNA fragment ～27 bp long. The SN₃ contains histone H4, the above-mentioned specific nonhistone protein and a DNA fragment ～27 bp long. The SN₄ contains histones H2a, H2b, H4 and a DNA fragment ～45 bp long. The SN₅ contains histones H2a, H2b, H3 and a DNA fragment ～55 bp long. The SN₆ is a complex of histone H1 and a DNA fragment ～35 bp long. Subnucleosomes SN₇ and SN₈ each contain all the histones except H1, and DNA fragments ～100 and ～120 bp long, respectively.Nuclease digestion of isolated mono- or dinucleosomes does not produce some of the subnucleosomes. These and related findings indicate that the cleavage required to generate these subnucleosomes result from some aspect of chromatin structure which is lost upon digestion to mono- and dinucleosomes.     

Metabolism and thermoregulation in desert and montane grasshoppers

Temperature regulation and oxygen consumption were examined in two species of grasshoppers: Melanoplus sanguinipes from cold alpine tundra at elevation 3,800 m, and Trimerotropis pallidipennis from hot desert habitats at elevation 250 m. Both species utilized behavioral thermoregulation to keep body temperature (T _b ) more constant than environmental temperatures (T _e ) during the day. The difference in average T _b in the two species was much less than the difference in T _e 's. Microclimate measurements indicate that temperature regulation is not difficult for M. sanguinipes, but T. pallidipennis must restrict activity for much of the day to avoid heat stress and can easily overheat if it moves into sunlit areas. Oxygen consumption ( \(\dot V{\text{O}}_{\text{2}} \) ) at average T _b and total daily energy expenditures are higher in M. sanguinipes than in T. pallidipennis, as is the Q₁₀ for \(\dot V{\text{O}}_{\text{2}} \) . These differences may be related to different strategies for energy utilization and predator avoidance.     

Nutrient restriction and realimentation in beef cows during early and mid-gestation and maternal and fetal hepatic and small intestinal in vitro oxygen consumption

Objectives were to determine the effects of advancing gestation, maternal nutrient restriction during early and mid-gestation, and realimentation on fetal liver and jejunal mass and energy use in both dams and fetuses. On day 30 of pregnancy, multiparous, non-lactating beef cows (initial BW=621±11.3 kg and body condition score=5.1±0.1) were assigned to one of the two dietary treatments: control (CON; 100% requirements; n=18) and restricted (R; 60% requirements; n=28). On day 85, cows were slaughtered (CON, n=6; R, n=6), and remaining cows continued on control (CC; n=12) and restricted (RR; n=12) diets, or were realimented to the control diet (RC; n=11). On day 140, cows were slaughtered (CC, n=6; RR, n=6; RC, n=5), remaining cows continued on the control diet (CCC, n=6; RCC, n=5), or were realimented to the control diet (RRC, n=6). On day 254, all remaining cows were slaughtered. Maternal liver O₂ consumption linearly increased (P⩽0.04) and jejunal weight (g/kg) linearly decreased (P=0.04) as gestation advanced in CON groups. Fetal BW, and hepatic and small intestinal absolute mass, protein content and O₂ consumption linearly increased (P⩽0.04) as pregnancy advanced in CON groups. However, mass and O₂ consumption relative to BW linearly decreased (P⩽0.001) in the fetal liver in CON groups. When analyzing the effects of dietary treatment, at day 85, fetal jejunal O₂ consumption (mol/min per kg BW) was lower (P=0.02) in the R group when compared with the CON group. At day 140, maternal hepatic weight (g) was lower (P=0.02) in RC and RR cows when compared with CC, and fetal jejunual O₂ consumption (mmol/min per mg tissue and mmol/min per g protein) was greater (P⩽0.02) in RC when compared with RR. At day 254, maternal hepatic O₂ consumption (absolute and relative to BW) was lower (P⩽0.04) in the RCC cows when compared with RRC. Fetal hepatic weight was lower (P=0.05) in the CCC group when compared with RCC and RRC. The changes in response to nutrient restriction and realimentation in both the dam and fetus may indicate an adaptation to a lower amount of available nutrients by altering tissue mass and metabolism.     

Ovule and seed anatomy ofCistaceae and relatedMalvanae

Ovule and especially seed anatomy of eight species ofCochlospermaceae, Bixaceae, Cistaceae, Monotoideae, Pakaraimaeoideae (two subfamilies ofDipterocarpaceae), andSarcolaenaceae were investigated. All representatives show a bixoid chalazal region in the seed as probable exclusive synapomorphy among angiosperms. The palisade layer of the exotegmen is curved inwards at its proximal end and forms a dome-shaped structure. A plug of hypostase tissue with an annulus/core structure fits into this dome. Moreover, two additional tissue types in the hypostase can be found in some representatives of the group. These and other micromorphological, wood anatomical, and floral morphological characters, indicate that the taxa form a monophyletic group close toMalvales s. str. The form of the starch grains in the endosperm is compared and is described for the first time forPakaraimaea (Dipterocarpaceae) andLeptolaena (Sarcolaenaceae). The position ofDiegodendron close toBixa and the presumably more distant positions ofMuntingia andNeuradaceae are discussed.