Next issue (November 2007): Singapore Biotech Crossroads

Edited by Dr. Michael Entzeroth, Singapore Highlight articles: – Singapore's biomedical sciences landscape – Re-starting malaria research at NITD – CombinatoRx moves its molecular speed-dating to Singapore – UK-Singapore relationships in life sciences – AMRI and Singapore: Driving discovery in Asia – Function of SIRT1 Deacetylase in Oncology – The chakragati mouse: rapid in vivo antipsychotic drug screening – Neuroscience drug discovery in Singapore ... and much more: Read the next issue of BTJ!     

From genes to therapeutics: educating the government and the public on biomedical sciences-a Singapore experience

Singapore has a highly developed economy and has been recognized to have one of the best business environments in Asia. Her success is based largely on focused developments of key industries in traded services and manufacturing sectors. The challenge for Singapore is to utilize her small human resource to transform the present economy to a more knowledge-intensive economy. Singapore has recently embarked on the ambitious goal of developing Biomedical Sciences as an industry. Educating the government and the public on various aspects of this new industry was identified as one of the essential steps towards this goal. The challenge was to inspire non-biologists to embrace the life sciences. This review describes how a series of workshops were developed to address the needs and the challenges of educating the public and the government.     

Playing dice with mice: building experimental futures in Singapore

This short paper adds to debates on the unfolding spaces and logics of biotechnological development bought together in the 2009 special issue of New Genetics and Society on ‘Biopolitics in Asia’. Though an unlikely comparison between the development of the genomic sciences and the building of gambling casinos in the city state of Singapore, it reflects on the nature of political and technological investments in this South-East Asian city. It argues that Western expectations of a link between scientific practices, and civic epistemologies linked to democratic decision-making, are replaced by a rather different future orientation to scientific experimentation, economic investment and social development in Singapore.     

Learning developmental biology has priority in the life sciences curriculum in Singapore

Singapore has embraced the life sciences as an important discipline to be emphasized in schools and universities. This is part of the nation's strategic move towards a knowledge-based economy, with the life sciences poised as a new engine for economic growth. In the life sciences, the area of developmental biology is of prime interest, since it is not just intriguing for students to know how a single cell can give rise to a complex, coordinated, functional life that is multicellular and multifaceted, but more importantly, there is much in developmental biology that can have biomedical implications. At different levels in the Singapore educational system, students are exposed to various aspects of developmental biology. The author has given many guest lectures to secondary (ages 12-16) and high school (ages 17-18) students to enthuse them about topics such as embryo cloning and stem cell biology. At the university level, some selected topics in developmental biology are part of a broader course which caters for students not majoring in the life sciences, so that they will learn to comprehend how development takes place and the significance of the knowledge and impacts of the technologies derived in the field. For students majoring in the life sciences, the subject is taught progressively in years two and three, so that students will gain specialist knowledge in developmental biology. As they learn, students are exposed to concepts, principles and mechanisms that underlie development. Different model organisms are studied to demonstrate the rapid advances in this field and to show the interconnectivity of developmental themes among living things. The course inevitably touches on life and death matters, and the social and ethical implications of recent technologies which enable scientists to manipulate life are discussed accordingly, either in class, in a discussion forum, or through essay writing.     

Defensins: antimicrobial peptides for therapeutic development

A novel class of endogenous antimicrobial peptides called defensins has shown great versatility in their activity against a diverse range of microorganisms including bacteria, viruses and fungi. Their mode of action of bacterial cell lysis seems largely nonspecific and so promises to avert the development of resistance. These two features have made them an area of intense research activity and growing commercial interest. A successful multidisciplinary effort to investigate and develop novel defensins analogues has been established in Singapore that involves computer modeling, biochemistry, proteomics, chemical synthesis, molecular biology and clinical sciences.     

The future of biomanufacturing in Singapore

Singapore's vision is to become a global biomedical sciences (BMS) hub and to develop the BMS industry as the fourth manufacturing pillar of Singapore's economy. The biomanufacturing industry has been a significant growth area for Singapore's BMS industry, with four major biologics investments totaling close to US$1 billion being committed in less than 2 years and the setting up of local biomanufacturing companies. In parallel, resources in biomedical research and bioprocess manpower capabilities are being built up for this knowledge-intensive industry. Located at the Biopolis, the epicenter of biomedical R&D, the Bioprocessing Technology Institute (BTI) has been developing bioprocess expertise and programs to support the manpower needs of the growing biomanufacturing sector. With a strong commitment to provide the biomanufacturing industry with research and manpower support, the future looks promising and Singapore is well positioned to become a leading biomanufacturing hub in Asia Pacific.     

Nuclear microscopy in the life sciences at the national university of singapore

The nuclear microscope is now gaining popularity in the field of life sciences. In particular, the combination of proton-induced X-ray emission to measure the elemental concentrations of inorganic elements, Rutherford backscattering spectrometry to characterize the organic matrix, and scanning transmission ion microscopy to provide information on the density and structure of the sample represents a powerful set of techniques that can be applied simultaneously to the specimen under investigation. These techniques are extremely useful for measuring any imbalances in trace elements in localized regions of biological tissue and, as such, can provide unique information on many diseases. In this article, we describe the nuclear microscope and its related ionbeam techniques, and we review the biomedical work carried out using the nuclear microscope in the National University of Singapore.     

Restriction fragment length polymorphism (RFLP) of Salmonella organisms

Genetic relatedness of 20 Salmonella isolates comprising 16 serotypes was analysed by restriction endonuclease digestion of the total DNA with six endonucleases individually. The rDNA fingerprints generated by EcoRI were more polymorphic, each serotype showed a unique fingerprint sharing several core (monomorphic) bands with several polymorphic bands. Eight characteristic NciI rDNA fingerprints were found. Similar rDNA RFLP patterns were observed in strains of Salmonella from different serotypes.S.I. Koh-Luar and E. Lau are with the Department of Chemical Process & Biotechnology, Singapore Polytechnic, 500 Doyer Road, Singapore 139651. Republic of Singapore; S. T. Chew is with the Veterinary Public Health Laboratory (VPHL), Primary Production Department (PPD), 51 Jalan Buroh, Singapore 619415. Republic of Singapore. S.B. Chua is with the Veterinary Public Health Division, Primary Production Department, 5 Maxwell Road, No. 03-00, Tower Block, MND Complex, Singapore 069110. Republic of Singapore.     

Comparative life-cycle impact assessment of concrete manufacturing in Singapore

Purpose

For countries like Singapore that is highly dependent on imported goods, it is essential to consider the consequences of consumption of imported cement and other concrete constituents for a fair carbon trading at global and regional levels. Recently, as a result of reduction in trade barriers and costs of materials and fuels, Singapore does not have much incentive in reducing environmental impacts of these imported goods. However, Singapore has set high environmental targets nationally to reduce impacts from building and construction. In addition to its national efforts, Singapore also needs to take action in trade-related consequences of importing energy-intensive products like cement and aggregates to Singapore. The purpose of this study is to quantify and suggest alternatives for reducing the embodied energy and life-cycle impacts of concrete consumption in Singapore on the basis of current trading volumes of these materials from Singapore’s importers.

Methods

A detailed life-cycle assessment of concrete manufacturing in Singapore is performed to suggest possible ways to reduce the environmental impacts from importing cement and aggregates from Singapore’s trade partners based on an earlier life-cycle inventory developed for Singapore and its neighboring countries. Life-cycle impact assessment (LCIA) impact characterization factors are based on a midpoint-oriented and hierarchist approach as defined by ReCiPe method. Following the LCIA, a scenario analysis is conducted to select the best combination of cement and aggregate importers of Singapore based on their environmental performance.

Results and discussion

Results from the scenario analysis show that overall impacts can be reduced by importing the materials from a nearer source with efficient production technologies and greener fuel mixes. About 10–34 % reduction is estimated in embodied energy, acidification, eutrophication, global warming potential, smog, and health impacts by importing from a closer and technologically greener source.

Conclusions

Despite the limitations due to data and modeling uncertainties, this study constitutes a baseline/benchmark for addressing the current cement and aggregate markets and associated environmental impacts of concrete consumption in Singapore based on historical import quantities of cement and aggregates from neighboring countries of Singapore. In the near future, policy-related action would be influential in achieving Singapore’s national and global environmental targets in buildings and construction sector. Incorporation of an LCA approach into Green Mark Scheme (GMS) by the Building and Construction Authority (BCA) is recommended for Singapore to comply both with its national goals and with its new climate action plan to the UN Framework Convention on Climate Change.

     

A comparative analysis of human thermal conditions in outdoor urban spaces in the summer season in Singapore and Changsha, China

This paper presents the comparative analysis between the findings from two field surveys of human thermal conditions in outdoor urban spaces during the summer season. The first survey was carried out from August 2010 to May 2011 in Singapore and the second survey was carried out from June 2010 to August 2010 in Changsha, China. The physiologically equivalent temperature (PET) was utilized as the thermal index to assess the thermal conditions. Differences were found between the two city respondents in terms of thermal sensation, humidity sensation, and wind speed sensation. No big difference was found between the two city respondents regarding the sun sensation. The two city respondents had similar neutral PET of 28.1 °C for Singapore and 27.9 °C for Changsha, respectively. However, Singapore respondents were more sensitive to PET change than Changsha respondents and the acceptable PET range for Changsha respondents was wider than that for Singapore respondents. Besides, the two city respondents had different thermal expectations with the preferred PET of 25.2 °C and 22.1 °C for Singapore and Changsha, respectively. The results also reveal that Changsha respondents were more tolerant than Singapore respondents under hot conditions. Finally, two regression models were proposed for Singapore and Changsha to predict the human thermal sensation in a given outdoor thermal environment.     

Association between the dopamine D4 receptor gene exon III variable number of tandem repeats and political attitudes in female Han Chinese

Twin and family studies suggest that political attitudes are partially determined by an individual''s genotype. The dopamine D4 receptor gene (DRD4) exon III repeat region that has been extensively studied in connection with human behaviour, is a plausible candidate to contribute to individual differences in political attitudes. A first United States study provisionally identified this gene with political attitude along a liberal–conservative axis albeit contingent upon number of friends. In a large sample of 1771 Han Chinese university students in Singapore, we observed a significant main effect of association between the DRD4 exon III variable number of tandem repeats and political attitude. Subjects with two copies of the 4-repeat allele (4R/4R) were significantly more conservative. Our results provided evidence for a role of the DRD4 gene variants in contributing to individual differences in political attitude particularly in females and more generally suggested that associations between individual genes, and neurochemical pathways, contributing to traits relevant to the social sciences can be provisionally identified.     

Life cycle emissions and energy study of biodiesel derived from waste cooking oil and diesel in Singapore

Background, aim and scope  

Biodiesel derived from Waste Cooking Oil (WCO) is considered highly environmentally sustainable since WCO is a waste product from domestic and commercial cooking processes and then recycled to a transportation fuel in Singapore. In addition, it avoids the conversion of land use for crop production. This is a strong advantage for Singapore which has relatively smaller land space than other countries. The import of virgin oil as feedstock into Singapore is also avoided. Therefore, the more appropriate feedstock to produce biodiesel in Singapore context is WCO. According to the National Environment Agency, diesel vehicles in Singapore contribute 50% of the total particulate matter smaller than 2.5 μm (PM_0.25) emissions to air ambient. Hence, the aim of this life cycle assessment study was to compare the environmental performances of biodiesel derived from WCO and low sulphur diesel in terms of global warming potential, life cycle energy efficiency (LCEE) and fossil energy ratio (FER) using the life cycle inventory. The results of this study would serve as a reference for energy policy makers and environmental agencies.     

Characterisation framework development for the SIMPASS (Singapore IMPact ASSessment) methodology

Purpose  

Life cycle assessment (LCA) practitioners in Singapore currently rely on foreign life cycle impact assessment (LCIA) methodologies when conducting studies, despite the fact that foreign methodologies may not be relevant, adaptable and sensitive to Singapore's circumstances. As a result, work has been undertaken to develop the Singapore IMPact ASSessment (SIMPASS) methodology by adapting and modifying existing LCIA methodologies to suit the Singaporean context. It is envisioned that the use of SIMPASS will improve the accuracy of LCA studies conducted for industries operating in Singapore.     

Morphological variation in the polyps of the scleractinian coral Favia speciosa (Dana) around Singapore

A photographic technique was used to examine morphological differences in the living polyps of Favia speciosa sampled from three sites around Singapore. Eight characters were measured, seven of which differed significantly between the three study sites. Sedimentation rates and character size were much higher at the site closest to the mainland than at the two sites further from shore. Land reclamation and dredging contribute to high sediment rates in Singapore waters; these rates decrease with increasing distance from shore. Large polyps close to the main island of Singapore are possibly a plastic, or selected for, response to high levels of sediment.     

Morphology and somatometric growth of long-tailed macaques (Macaca fascicularis fascicularis) in Singapore

Crab-eating, or long-tailed, macaques [ Macaca fascicularis (Raffles, 1821)] have been studied extensively throughout their distribution in South and South-east Asia. Despite this extensive body of research, the island population of long-tailed macaques from Singapore remains virtually undescribed. In the present study, we compare the morphometric variability and patterns of growth observed in a population sample from Singapore with a composite sample from Thailand, north of the Isthmus of Kra. The results of our analyses indicate that there are statistically significant differences between the two populations in adult size and shape. For both males and females, the Singapore population is smaller than the Thai population. Relative to body length, the Singapore macaques exhibit significantly longer tails, and, relative to cranial length, they exhibit significantly more narrow faces than the Thai macaques. Although levels of sexual dimorphism for most morphometric traits are very similar, indicating similar levels of male–male competition for females, the Singapore males exhibit a significantly larger testicular volume relative to body weight, suggestive of an alternative male reproductive strategy. In addition to adult somatometric size and shape, comparisons of growth patterns relative to age and body size reveal significant differences between the two population samples. Combined, these results suggest either that statistically significant differences in adult morphology and patterns of growth can occur in presumably reproductively cohesive subspecies, or the Singapore macaques may be taxonomically distinct.  © 2007 The Linnean Society of London, Biological Journal of the Linnean Society , 2007, 92 , 675–694.     

Asian population frequencies and haplotype distribution of killer cell immunoglobulin-like receptor (KIR) genes among Chinese, Malay, and Indian in Singapore

Killer cell immunoglobulin-like receptors (KIR) gene frequencies have been shown to be distinctly different between populations and contribute to functional variation in the immune response. We have investigated KIR gene frequencies in 370 individuals representing three Asian populations in Singapore and report here the distribution of 14 KIR genes (2DL1, 2DL2, 2DL3, 2DL4, 2DL5, 2DS1, 2DS2, 2DS3, 2DS4, 2DS5, 3DL1, 3DL2, 3DL3, 3DS1) with two pseudogenes (2DP1, 3DP1) among Singapore Chinese (n = 210); Singapore Malay (n = 80), and Singapore Indian (n = 80). Four framework genes (KIR3DL3, 3DP1, 2DL4, 3DL2) and a nonframework pseudogene 2DP1 were detected in all samples while KIR2DS2, 2DL2, 2DL5, and 2DS5 had the greatest significant variation across the three populations. Fifteen significant linkage patterns, consistent with associations between genes of A and B haplotypes, were observed. Eighty-four distinct KIR profiles were determined in our populations, 38 of which had not been described in other populations. KIR haplotype studies were performed using nine Singapore Chinese families comprising 34 individuals. All genotypes could be resolved into corresponding pairs of existing haplotypes with eight distinct KIR genotypes and eight different haplotypes. The haplotype A2 with frequency of 63.9% was dominant in Singapore Chinese, comparable to that reported in Korean and Chinese Han. The A haplotypes predominate in Singapore Chinese, with ratio of A to B haplotypes of approximately 3:1. Comparison with KIR frequencies in other populations showed that Singapore Chinese shared similar distributions with Chinese Han, Japanese, and Korean; Singapore Indian was found to be comparable with North Indian Hindus while Singapore Malay resembled the Thai. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Prevalence of Cataract Surgery and Visual Outcomes in Indian Immigrants in Singapore: The Singapore Indian Eye Study

Objective

To determine the prevalence of cataract surgery and factors associated with post-surgical visual outcomes in migrant Indians living in Singapore.

Research Design and Methods

We conducted a population-based study in 3,400 Indian immigrants residing in Singapore−the Singapore Indian Eye Study (SINDI). All participants underwent comprehensive medical eye examination and a standardized interview. Post-operative visual impairment (VI) was defined as best-corrected or presenting visual acuity (BCVA or PVA) of 20/60 or worse.

Results

The age- and gender-standardized prevalence of cataract surgery was 9.7% (95% confidence interval [CI]: 8.9%, 10.7%) in Singapore resident Indians. Post-operative VI defined by BCVA occurred in 10.9% eyes (87/795). The main causes of post-operative VI were diabetic retinopathy (20.7%), posterior capsular opacification (18.4%), and age-related macular degeneration (12.6%). Undercorrected refractive error doubled the prevalence of post-operative VI when PVA was used.

Conclusions

The rate of cataract surgery is about 10% in Indian residents in Singapore. Socioeconomic variables and migration had no significant impact on the prevalence of cataract surgery. Diabetic retinopathy was a major cause of post-operative VI in migrant Indians living in Singapore. Uncorrected postoperative refractive error remains an efficient way to improve vision.     

Characterizing human-macaque interactions in Singapore

Previous studies have noted substantial human-macaque interactions involving physical contact in Bali, Indonesia; Gibraltar; and Mt. Emei, China [Fuentes, American Journal of Primatology 68:880-896, 2006; Zhao, Tibetan macaques, visitors, and local people at Mt. Emei: problems and countermeasures. In: Paterson and Wallis, editor. Commensalism and conflict: the human-primate interface. Norman, OK: American Society of Primatologists. p 376-399, 2005]. The aim of this study was to conduct preliminary observations in order to begin to characterize interaction patterns between humans and long-tailed macaques (Macaca fascicularis) in Singapore. Unlike Bali, Gibraltar, and Mt. Emei, Singapore occasionally enforces fines and penalties and engages in an education campaign in an effort to minimize physical contact between humans and macaques. Observers stationed at two sites in Singapore conducted 92 5 hr of observation that included 730 human-macaque interactions over 16 days. Data recorded include interaction characteristics, demographic and behavioral variables, presence of feeding by humans, and presence of automobiles. Although feeding by humans was relatively infrequent overall, it generally occurred most often by individuals in cars and when human children were present. Data analysis suggests that interactions involving physical contact between macaques and humans are rare in Singapore, in contrast to the findings from Bali, Gibraltar, and Mt. Emei. This low level of physical contact suggests a low risk of macaque-human pathogen transmission in Singapore.     

Research on basal stem rot (BSR) of ornamental palms caused by basidiospores from <Emphasis Type="Italic">Ganoderma boninense</Emphasis>

Basidiospores were isolated from the fruiting bodies of Ganoderma infecting oil palms from an estate in Johor and from ornamental palms (including oil palms) from Singapore. The spores were then germinated to obtain homokaryotic mycelia. Based on clamp connection formation in paired hyphal fusions, tester strains were identified from the homokaryons isolated. Compatibility tests were then carried out using these testers to determine the relatedness of the homokaryotic Ganoderma isolates, both from Johor and from Singapore. Results from the compatibility tests showed that Ganoderma from both locations belong to the same species, while the Ganoderma isolates from Singapore share some common alleles. The pathogenicity tests carried out on Chrysalidocarpus lutescens seedlings using inoculum growing on rubber wood blocks showed that dikaryotic mycelia can cause basal stem rot infection.     

The tick Ixodes granulatus infests Rattus rattus populating a small island offshore of Singapore

The ixodid tick Ixodes granulosus Supino 1897 was found infesting Rattus rattus in Semakau island, one of the small offshore islands fringing Singapore to the south. None of the examined R. rattus from the other islands fringing Singapore, or from Singapore island were found infested. Ixodes granulatus occurs, however, on Singapore island on Rattus annandalei, resident of undisturbed forested habitats. We speculate that invading black rats in Semakau replaced autochthonous sylvatic rodent population and contracted their associate tick population.