The Abundance and Distribution of Wolverines in British Columbia,Canada

ABSTRACT The abundance and distribution of carnivores and their habitat are key information needed for status assessment, conservation planning, population management, and assessment of the effects of human development on their habitat and populations. We developed a habitat quality rating system, using existing wolverine (Gulo gulo) distribution, wolverine food, ecosystem mapping, and human development data. We used this and empirically derived estimates of wolverine density to predict wolverine distribution and abundance at a provincial scale. Density estimates for wolverines in high-quality habitat averaged 6.2 wolverines/1,000 km² (95% CI = 4.2–9.5). We predicted mean densities ranging from 0.3/1,000 km² in rare-quality habitat to 4.1/1,000 km² in moderate-quality habitat. Our predicted population estimate for wolverines in British Columbia was 3,530 (95% CI = 2,700-4,760). We predicted highest densities of wolverines in interior mountainous regions, moderate densities in interior plateau and boreal forest regions, and low densities in mainland coastal regions and drier interior plateaus. We predicted that wolverines would be rare on Vancouver Island, along the outer mainland coast, and in the dry interior forests, and absent from the Queen Charlotte Islands, interior grassland environments, and areas of intensive urban development.     

Assessment of the Sustainability of Wolverine Harvest in British Columbia,Canada

ABSTRACT Wolverines (Gulo gulo) are distributed across much of northern and western Canada and Alaska, USA, and they extend south into the mountainous western United States. Wolverines occur in most regions of British Columbia, Canada, with the highest population densities occurring in the interior mountainous areas. Wolverine populations in British Columbia have been primarily managed to provide a sustainable harvest for trappers and hunters. We used spatially based population estimates, population vital rate data, and spatially based harvest data to evaluate the sustainability of wolverine harvest (trapping and hunting) from 1985 to 2004. The median annual provincial wolverine harvest from 1985 to 2004 was 172 wolverines per year ( = 174.8), which was less than the median simulated estimate of provincial recruitment (195.9 wolverines/yr; = 209.7). Harvests in individual population units ranged from 0 to 280 over the 20-year period. Spatially, wolverine harvest was likely to have been unsustainable in 15 of the 71 population units with wolverines, and it was likely to have been sustainable in the remaining population units. Harvest in 5 of the other 56 population units was marginally sustainable and thus of potential management concern. To improve harvest management of wolverines in British Columbia, wildlife managers should focus on improved data collection and monitoring at a provincial scale, and they should work with trappers and hunters at regional scales to address issues specific to individual population units. Further research is required to improve the reliability of wolverine vital rate and population data.     

Population structure of North American beluga whales (Delphinapterus leucas) based on nuclear DNA microsatellite variation and contrasted with the population structure revealed by mitochondrial DNA variation

Beluga whales ( Delphinapterus leucas ) in North American waters migrate seasonally between wintering areas in broken pack ice and summering locations in estuaries and other open water areas in the Arctic and sub-Arctic. Results from our previous investigation of beluga whale mitochondrial DNA (mtDNA) revealed genetic heterogeneity among beluga from different summering locations that was interpreted as representing a high degree of summering site philopatry. However, mtDNA is maternally inherited and does not reflect mating that may occur among beluga from different summering locations in wintering areas or during annual migrations. To test the possibility that breeding occurs among beluga from different summering locations, genetic variability at five nuclear DNA (nDNA) microsatellite loci was examined in the same animals tested in the mtDNA study. Beluga samples ( n = 640) were collected between 1984 and 1994 from 24 sites across North America, mostly during the summer. Whales from the various sites were categorized into eight summering locations as identified by mtDNA analysis, as well as four hypothesized wintering areas: Bering Sea, Hudson Strait (Hudson Strait, Labrador Sea, southwest Davis Strait), Baffin Bay (North Water, east Davis Strait), and St Lawrence River. Microsatellite allele frequencies indicated genetic homogeneity among animals from summering sites believed to winter together but differentiation among whales from some of the wintering areas. In particular, beluga from western North America (Bering Sea) were clearly distinguished from beluga from eastern North America (Hudson Strait, Baffin Bay, and St Lawrence River). Based upon the combined data set, the population of North American beluga whales was divided into two evolutionarily significant units. However, the population may be further subdivided into management units to reflect distinct groups of beluga at summering locations.     

Population structure of North American beluga whales (Delphinapterus leucas) based on nuclear DNA microsatellite variation and contrasted with the population structure revealed by mitochondrial DNA variation

Beluga whales ( Delphinapterus leucas ) in North American waters migrate seasonally between wintering areas in broken pack ice and summering locations in estuaries and other open water areas in the Arctic and sub-Arctic. Results from our previous investigation of beluga whale mitochondrial DNA (mtDNA) revealed genetic heterogeneity among beluga from different summering locations that was interpreted as representing a high degree of summering site philopatry. However, mtDNA is maternally inherited and does not reflect mating that may occur among beluga from different summering locations in wintering areas or during annual migrations. To test the possibility that breeding occurs among beluga from different summering locations, genetic variability at five nuclear DNA (nDNA) microsatellite loci was examined in the same animals tested in the mtDNA study. Beluga samples ( n = 640) were collected between 1984 and 1994 from 24 sites across North America, mostly during the summer. Whales from the various sites were categorized into eight summering locations as identified by mtDNA analysis, as well as four hypothesized wintering areas: Bering Sea, Hudson Strait (Hudson Strait, Labrador Sea, southwest Davis Strait), Baffin Bay (North Water, east Davis Strait), and St Lawrence River. Microsatellite allele frequencies indicated genetic homogeneity among animals from summering sites believed to winter together but differentiation among whales from some of the wintering areas. In particular, beluga from western North America (Bering Sea) were clearly distinguished from beluga from eastern North America (Hudson Strait, Baffin Bay, and St Lawrence River). Based upon the combined data set, the population of North American beluga whales was divided into two evolutionarily significant units. However, the population may be further subdivided into management units to reflect distinct groups of beluga at summering locations.     

Searching for DNA in museum specimens: a comparison of sources in a mammal species

The number of genetic studies that use preserved specimens as sources of DNA has been steadily increasing during the last few years. Therefore, selecting the sources that are more likely to provide a suitable amount of DNA of enough quality to be amplified and at the minimum cost to the original specimen is an important step for future research. We have compared different types of tissue (hides vs. bones) from museum specimens of Iberian lynx and multiple alternative sources within each type (skin, footpad, footpad powder, claw, diaphysis, maxilloturbinal bone, mastoid process and canine) for DNA yield and probability of amplification of both mitochondrial and nuclear targets. Our results show that bone samples yield more and better DNA than hides, particularly from sources from skull, such as mastoid process and canines. However, claws offer an amplification success as high as bone sources, which makes them the preferred DNA source when no skeletal pieces have been preserved. Most importantly, these recommended sources can be sampled incurring minimal damage to the specimens while amplifying at a high success rate for both mitochondrial and microsatellite markers.     

Modeling Wolverine Occurrence Using Aerial Surveys of Tracks in Snow

ABSTRACT We designed a novel approach to determining extent of distribution and area of occupancy for wolverines (Gulo gulo) by using aerial surveys of tracks in snow and hierarchical spatial modeling. In 2005 we used a small, fixed-wing aircraft with pilot and one observer to search 575 of 588 survey units for wolverine tracks in approximately 60,000 km² of boreal forest in northwestern Ontario, Canada. We used sinuous flight paths to scan open areas in the forest in the 100-km² survey units. We detected tracks in 138 (24%) of the 575 sampled units. There was strong evidence of occurrence (probability of occurrence >0.80) in 30% of the 588 survey units, weak evidence of occurrence (0.50–0.80) in 12%, weak evidence of absence (0.20–0.50) in 15%, and strong evidence of absence (< 0.20) in 43%. Wolverine range comprised 59% of the study area and area of occupancy was 33,400 km². With information on probability of occurrence and core areas of occupation for wolverines in our study area, resource managers and others can examine factors that influence wolverine distribution patterns and use this information to formulate best management practices that will maintain wolverines on the landscape in the face of increasing resource development. Comparing future survey results with those of our 2005 survey will provide an objective way to assess the efficacy of management practices.     

The Sustainability of Wolverine Trapping Mortality in Southern Canada

Range declines, habitat connectivity, and trapping have created conservation concern for wolverines throughout their range in North America. Previous researchers used population models and observed estimates of survival and reproduction to infer that current trapping rates limit population growth, except perhaps in the far north where trapping rates are lower. Assessing the sustainability of trapping requires demographic and abundance data that are expensive to acquire and are therefore usually only achievable for small populations, which makes generalization risky. We surveyed wolverines over a large area of southern British Columbia and Alberta, Canada, used spatial capture-recapture models to estimate density, and calculated trapping kill rates using provincial fur harvest data. Wolverine density averaged 2 wolverines/1,000 km² and was positively related to spring snow cover and negatively related to road density. Observed annual trapping mortality was >8.4%/year. This level of mortality is unlikely to be sustainable except in rare cases where movement rates are high among sub-populations and sizable un-trapped refuges exist. Our results suggest wolverine trapping is not sustainable because our study area was fragmented by human and natural barriers and few large refuges existed. We recommend future wolverine trapping mortality be reduced by ≥50% throughout southern British Columbia and Alberta to promote population recovery. © 2019 The Authors. The Journal of Wildlife Management published by Wiley Periodicals, Inc. on behalf of The Wildlife Society.     

Routine DNA analysis based on 12S rRNA gene sequencing as a tool in the management of captive primates

Automated DNA sequencing of a fragment of the relatively slowly evolving mitochondrial 12S rRNA gene was used to distinguish primate species, and the method was compared with species determination based upon classical taxonomy. DNA from blood from 53 monkeys housed at the Stichting AAP Shelter for Exotic Animals, all Old World monkeys, was amplified by polymerase chain reaction (PCR) with a primer set spanning approximately 390 nucleotides of the mitochondrial 12S rRNA gene. The products were directly sequenced and compared with our database of primate 12S sequences. Many individuals were found to harbor a 12S sequence identical to one of the reference sequences. For others, phylogenetic methods were used for species estimation, which was especially informative in Cercopithecus species.     

Molecular Analysis Using Mitochondrial DNA and Microsatellites to Infer the Formation Process of Japanese Native Horse Populations

To assess the genetic diversity of Japanese native horse populations, we examined seven such populations using mitochondrial DNA (mtDNA) and microsatellite analyses. Four reference populations of Mongolian horses and European breeds were employed as other equids. In the mtDNA analysis, the control region (D-loop) of 411 bp was sequenced, and 12 haplotypes with 33 variable sites were identified in the Japanese native horses. The phylogenetic tree constructed by haplogrouping and using worldwide geographic references indicated that the haplotypes of the Japanese native horses were derived from six equid clusters. Compared with the foreign populations, the Japanese native populations showed lower within-population diversity and higher between-population differentiation. Microsatellite analysis, using 27 markers, found an average number of alleles per locus of 9.6 in 318 native and foreign horses. In most native populations, the within-population diversity was lower than that observed in foreign populations. The genetic distance matrix based on allelic frequency indicated that several native populations had notably high between-population differentiation. The molecular coancestry-based genetic distance matrix revealed that the European populations were differentiated from the Japanese and Mongolian populations, and no clear groups could be identified among the Japanese native horse populations. The genetic distance matrices had few correlations with the geographic distribution of the Japanese native populations. Based on the results of both mtDNA and microsatellite analyses, it could be speculated that each native population was formed by the founder populations derived from Mongolian horses. The genetic construction of each population appears to have been derived from independent breeding in each local area since the time of population fission, and this was accompanied by drastic genetic drift in recent times. This information will help to elucidate the ancestry of Japanese native horses. An erratum to this article can be found at     

动物线粒体DNA提取简易流程及其优化

目的:研究动物线粒体DNA(mtDNA)提取的简易流程,以提取到纯度高、结构完整的动物mtDNA。方法:采用SDS碱变性法,从动物的肝脏和性腺等组织中提取mtDNA,并增加了DNaseⅠ、RNase消化步骤,以除去核DNA及RNA的污染;用紫外分光光度计分析mtDNA的纯度和得率。结果:mtDNA的得率为0.5～0.8μg/g,D260nm/D280nm值为1.77～1.82,能满足对mtDNA进行RFLP分析、RAPD分析、测序分析等的要求。结论:改进的动物mtDNA提取方法简便可行,值得推广。     

Re-examination of the historical range of the greater prairie chicken using provenance data and DNA analysis of museum collections

The extent to which a species has declined within its historical range is commonly used as an important criterion in categorizing the conservation status of wild populations. The greater prairie chicken (Tympanuchus cupido) has been extirpated from much of the area it once inhabited. However, within a large part of this area the species is not considered to be native, warranting no recovery effort or special protection. Demographic analysis based on provenance data from 238 specimens from museum collections in addition to genetic analyses of 100 mtDNA sequences suggest this species was native to the northern prairies, extending from central Minnesota to Alberta, Canada. Provenance data from 1879 to 1935 indicate that T. cupido would have required colonization and establishment of populations on an average 11,905 km² every year, with an estimated per capita growth rate of 8.9% per year. These rates seem unrealistic given the limited dispersal and high mortality rates reported for this species. A survey of mtDNA sequences from “original” and “expanded” ranges revealed no differences in levels of sequence diversity within ranges (π=0.018; SE=0.004) but significant levels of genetic differentiation (F _ST=0.034; P=0.013), which suggest that these populations have been relatively isolated for significant evolutionary time periods. DNA mismatch distributions fit a sudden expansion model consistent with a post-Pleistocene expansion of the species, which coincides with the expansion of prairies into the Canadian plains about 9000 years before present. This study demonstrates the value of museum collections as stores of ecological and genetic information fundamental for the conservation of natural populations, and suggests that the current status of the greater prairie chicken should be re-evaluated within all areas where this species may occur, but is now considered non-native.     

African DNA Lineages in the Mitochondrial Gene Pool of Europeans

Mitochondrial DNA (mtDNA) nucleotide sequences of African origin are found in various European populations at a low frequency (on average, less than 1%). Data on mtDNA variation in Eurasian and African populations have been analyzed, and African mtDNA lineages have been found in Europeans. It has been demonstrated that, despite the high diversity of mtDNA haplotypes of African origin in Europeans, few monophyletic clusters of African lineages are characterized by long-term diversity formed in Europe. Only two such mtDNA clusters (from haplogroups L1b and L3b) have been found, their evolutionary age not exceeding 6500 years. European and African populations have been compared with respect to the frequency distributions of the alleles of autosomal microsatellite loci found in Russian carriers of African mtDNA haplotypes. It has been demonstrated that alleles typical of Europeans are characteristic of the autosomal genotypes of these Russian individuals.     

Effects of storage type and time on DNA amplification success in tropical ungulate faeces

The present study compares the effect of three storage media (silica, RNAlater®, ethanol) and time to extraction (1 week, 1 month and 3 months) on mitochondrial and nuclear marker amplification success in faecal DNA extracts from a sympatric community of small to medium‐sized Central African forest ungulates (genera Cephalophus, Tragelaphus, Hyemoschus). The effect of storage type and time on nuclear DNA concentrations, genotyping errors and percentage recovery of consensus genotypes was also examined. Regardless of storage method, mitochondrial and nuclear amplification success was high in DNA extracted within the first week after collection. Over longer storage periods, RNAlater yielded better amplification success rates in the mitochondrial assay. However, samples stored on silica showed (i) highest nuclear DNA concentrations, (ii) best microsatellite genotyping success, (iii) lowest genotyping errors, and (iv) greatest percentage recovery of the consensus genotype. The quantity of nuclear DNA was generally a good predictor of microsatellite performance with 83% amplification success or greater achieved with sample DNA concentrations of ≥ 50 pg/µL. If faecal DNA samples are to be used for nuclear microsatellite analyses, we recommend silica as the best storage method. However, for maximum mitochondrial amplification success, RNAlater appears to be the best storage medium. In contrast, ethanol appeared inferior to the other two methods examined here and should not be used to store tropical ungulate faeces. Regardless of storage method, samples should be extracted as soon as possible after collection to ensure optimal recovery of DNA.     

Genetic characterization of wild and captive rhesus macaques in China

The genetic structures of wild and captive rhesus macaque populations within China were compared by analyzing the mtDNA sequences of 203 captive-bred Chinese rhesus macaques with 77 GenBank sequences from wild-caught animals trapped throughout China. The genotypes of 22 microsatellites of captive Chinese rhesus macaques were also compared with those of captive Indian animals. The Chinese population is significantly differentiated from the Indian population and is more heterogeneous. Thus, compared with Indian rhesus macaques the phenotypic variance of traits with high heritability will be inflated in Chinese animals. Our data suggest that the western Chinese provinces have more subdivided populations than the eastern and southern Chinese provinces. The southern Chinese populations are the least structured and might have been more recently established. Human-mediated interbreeding among captive Chinese populations has occurred, implying that Chinese breeding strategies can influence the interpretation of biomedical research in the USA.     

Historical and contemporary distributions of carnivores in forests of the Sierra Nevada, California, USA

Aim Mammalian carnivores are considered particularly sensitive indicators of environmental change. Information on the distribution of carnivores from the early 1900s provides a unique opportunity to evaluate changes in their distributions over a 75‐year period during which the influence of human uses of forest resources in California greatly increased. We present information on the distributions of forest carnivores in the context of two of the most significant changes in the Sierra Nevada during this period: the expansion of human settlement and the reduction in mature forests by timber harvest. Methods We compare the historical and contemporary distributions of 10 taxa of mesocarnivores in the conifer forests of the Sierra Nevada and southern Cascade Range by contrasting the distribution of museum and fur harvest records from the early 1900s with the distribution of detections from baited track‐plate and camera surveys conducted from 1996 to 2002. A total of 344 sample units (6 track plates and 1 camera each) were distributed systematically across c. 3,000,000 ha area over a 7‐year period. Results Two species, the wolverine (Gulo gulo) and the red fox (Vulpes vulpes), present in the historical record for our survey area, were not detected during the contemporary surveys. The distributions of 3 species (fisher [Martespennanti], American marten [M. americana], and Virginia opossum [Didelphisvirginiana]) have substantially changed since the early 1900s. The distributions of fishers and martens, mature‐forest specialists, appeared to have decreased in the northern Sierra Nevada and southern Cascade region. A reputed gap in the current distribution of fishers was confirmed. We report for the first time evidence that the distribution of martens has become fragmented in the southern Cascades and northern Sierra Nevada. The opossum, an introduced marsupial, expanded its distribution in the Sierra Nevada significantly since it was introduced to the south‐central coast region of California in the 1930s. There did not appear to be any changes in the distributions of the species that were considered habitat generalists: gray fox (Urocyon cinereoargenteus), striped skunk (Mephitis mephitis), western spotted skunk (Spilogale gracilis), or black bear (Ursus americanus). Detections of raccoons (Procyon lotor) and badgers (Taxidea taxus) were too rare to evaluate. Contemporary surveys indicated that weasels (M. frenata and M. erminea) were distributed throughout the study area, but historical data were not available for comparison. Main conclusions Two species, the wolverine and Sierra Nevada red fox, were not detected in contemporary surveys and may be extirpated or in extremely low densities in the regions sampled. The distributions of the mature forest specialists (marten and fisher) appear to have changed more than the distributions of the forest generalists. This is most likely due to a combination of loss of mature forest habitat, residential development and the latent effects of commercial trapping. Biological characteristics of individual species, in combination with the effect of human activities, appear to have combined to affect the current distributions of carnivores in the Sierra Nevada. Periodic resampling of the distributions of carnivores in California, via remote detection methods, is an efficient means for monitoring the status of their populations.     

Inferring the roles of vicariance,climate and topography in population differentiation in Salamandra algira (Caudata,Salamandridae)

Integrating information from species occurrence data, environmental variables and molecular markers can provide valuable insights about the processes of population persistence and differentiation. In this study, we present the most comprehensive overview of the evolutionary history of the North African salamander Salamandra algira (Caudata, Salamandridae) to date, including analyses of climatic and topographical variables, and sequences of two mitochondrial and two nuclear DNA fragments, with a special focus on Algerian populations, under‐represented in previous studies. Coalescent‐based phylogenetic analyses of mtDNA data recover four well‐supported population groups corresponding to described subspecies, with a western clade including populations in north‐western Morocco (with two subclades corresponding to the subspecies tingitana and splendens), and an eastern clade including populations from north‐eastern Morocco (subspecies spelaea) and Algeria (subspecies algira). Inferred split times between major clades date back to the Miocene, with additional splits within each major clade in the Plio‐Pleistocene. Present climatic (aridity) and topographical factors account for geographical discontinuities across population groups and help identify potential areas of secondary contact between clades corresponding to the subspecies tingitana and splendens in the Rif mountains in Morocco. Niche analysis indicates the absence of phylogenetic signal in the use of environmental space in this species.     

Retrospective Estimation of Genetic Diversity of an Extinct Oriental White Stork (Ciconia boyciana) Population in Japan Using Mounted Specimens and Implications for Reintroduction Programs

The Japanese regional population of the Oriental white stork (Ciconia boyciana) became extinct in 1986. Mitochondrial DNA (mtDNA) D-loop region from 20 mounted specimens preserved at public facilities in Toyooka City, Hyogo Prefecture, Japan and its vicinity (n = 17), the area inhabited by the last of the Japanese population, and samples originating from China (n = 3) which were kept at a zoo was analyzed. After extracting DNA from small pieces of skin from mounted specimens, a 1210-bp region of the mtDNA D-loop region was analyzed. The haplotypes among 11 specimens of storks captured or found dead at Toyooka City just before the population became extinct were completely identical. Four haplotypes observed among the mounted specimens preserved in the vicinity of Toyooka City were differentiated from those of captive storks originating from China and Russia in a previous study. Therefore, the last Japanese population might have been a genetically unique group. However, phylogenetic analysis using the maximum likelihood method showed that haplotypes found in the Japanese regional population were closely related to the Chinese and Russian lineages (sequence difference = 2.1%). One mounted specimen collected in 1935 at Izushi village, in the vicinity of Toyooka City, showed the same haplotype as the captive storks from China, suggesting that genetic flow may have historically occurred between the populations of Japan and the continent. Recently, reintroduction for the Oriental white stork has been planned in Toyooka City. The planning for the recovery of extinct populations should not only involve translocation of species to the range from which it disappeared, but also reconstruction of regional populations while considering the genetic lineage between the extinct and introduced populations.     

基于随机森林模型和GIS的假臭草全国适生区预测

假臭草Praxelisclematidea已对我国南方植物造成严重危害,通过预测其在中国的适生区,可为农林部门制定与加强防控措施提供科学依据。以我国296个假臭草分布记录点、国内气候因子和地形因子为基础,利用随机森林模型和地理信息系统(GIS)技术预测其在我国的潜在适生区。随机森林模型预测结果可信;影响假臭草分布的主要环境因子是最冷月份最低温度,其次是年均降水量,而地形因子和土地利用类型的影响较小;假臭草的主要适生区域位于我国南方各省(区),其中广东、广西、海南、福建、江西南部、云南西南部属于假臭草的高度适生区,占全国陆地面积8.08%;浙江沿海、江西中部、四川与重庆交界处等地区属于中度或一般适生区,占全国陆地面积2.32%和3.37%;低适生区和非适生区分别占全国陆地面积的9.09%和77.14%。在未来气候情景下,假臭草适生区总面积与现阶段相比无明显变化,但中度适生区面积增长明显,由2.32%增至4.33%。因此,在全球气候变暖的环境下,假臭草在国内还未达到最大繁殖范围,有持续扩散的可能性。     

Range‐wide genetic homogeneity in the California sea mussel (Mytilus californianus): a comparison of allozymes,nuclear DNA markers,and mitochondrial DNA sequences

We tested for genetic differentiation among six populations of California sea mussels (Mytilus californianus) sampled across 4000 km of its geographical range by comparing patterns of variation at four independent types of genetic markers: allozymes, single‐copy nuclear DNA markers, and DNA sequences from the male and female mitochondrial genomes. Despite our extensive sampling and genotyping efforts, we detected no significant differences among localities and no signal of isolation by distance suggesting that M. californianus is genetically homogeneous throughout its range. This concordance differs from similar studies on other mytilids, especially in the role of postsettlement selection generating differences between exposed coastal and estuarine habitats. To assess if this homogeneity was due to M. californianus not inhabiting estuarine environments, we reviewed studies comparing allozymes with other classes of nuclear DNA markers. Although both types of markers gave broadly consistent results, there was a bias favouring studies in which allozymes were more divergent than DNA markers (nine to three) and a disproportionate number of these cases involved marine taxa (seven). Furthermore, allozymes were significantly more heterogeneous than DNA markers in three of the four studies that sampled coastal and estuarine habitats. We conclude that the genetic uniformity exhibited by M. californianus may result from a combination of extensive gene flow and the lack of exposure to strong selective gradients across its range.